Clone Sequence Records
BS13446.3prime Sequence
577 bp (543 high quality bases) assembled on 2006-10-13
> BS13446.3prime
ATGGTCTAGAAAGCTTCTAGTCGATCTTGGTTGTTGGCATGGTGTACTCT
GCTGTAAGGGACGCCATTTCCCCTGCGTCATGCGGATGTCCATCGTCCAC
CGCTTCCTGGTTGCTAAATCGGTGTCGCAATATCGCCTCCTCCTGCATGG
CATAGTCACCTTGGGTTAATTGGTGATACTGGGCAGCCTCGCCCCTCGGC
TCCGGCATACTTCCCGATCCGGTCAGGCCGCTGCTGCTCCGATTCCGGCG
TCCGAACAGCACCACTGTGCCCTTACTCAGCAGCGGACAGAGCAGTGCTT
GGTGGCAGCACGCAAATATCCGGTAATTCGAGCCCTGGAACGGATCTGAC
ATAGCCGCACAGAGCATGTGGTCCAGATTGATACCAGTAAAAATTGAGAG
CGGAGAGAGAAGGATGAAGTGATAAAACAGCATGAAGGCGGTACCTATAT
GTGACCAGTGGAACTCGCTGAGGTCCTCGACAGTGTACGCTCCGCTTCGG
ATAATGTAAATCGGTATTATATAGAGCAGTGCATGCTGGATCCAATAGGT
GGCCTGCTCGAAGGGATATGTGCGGCC
BS13446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-PA | 999 | CG14591-RA | 439..999 | 577..17 | 2805 | 100 | Minus |
CG14591-PB | 999 | CG14591-RB | 439..999 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 1640 | CG14591-RD | 607..1167 | 577..17 | 2805 | 100 | Minus |
CG14591-RC | 1627 | CG14591-RC | 594..1154 | 577..17 | 2805 | 100 | Minus |
CG14591-RB | 1771 | CG14591-RB | 738..1298 | 577..17 | 2805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6037030..6037404 | 17..391 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 6037661..6037762 | 392..493 | 510 | 100 | Plus |
2R | 25286936 | 2R | 6037817..6037902 | 492..577 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:39:32 has no hits.
BS13446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:54 Download gff for
BS13446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-PB | 439..999 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:43 Download gff for
BS13446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 738..1306 | 8..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:56 Download gff for
BS13446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 738..1306 | 8..577 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:56 Download gff for
BS13446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6037022..6037404 | 8..391 | 99 | <- | Plus |
2R | 6037661..6037761 | 392..492 | 100 | <- | Plus |
2R | 6037818..6037902 | 493..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:43 Download gff for
BS13446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1924527..1924909 | 8..391 | 99 | <- | Plus |
arm_2R | 1925166..1925266 | 392..492 | 100 | <- | Plus |
arm_2R | 1925323..1925407 | 493..577 | 100 | | Plus |
BS13446.5prime Sequence
712 bp (566 high quality bases) assembled on 2006-10-13
> BS13446.5prime
GAAGTTATCAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCG
ATGAGATTCCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGAT
CGACGTCGCTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTAT
AATGCACCGCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGC
ACGAGATACAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCC
TTGTCAATGATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTC
AATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTT
ATCTTTTGGCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATA
CAGATGAGCAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGT
GGAGGGCCGCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATG
CACTGCTCTATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACT
GTCGAGGACCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCAT
GCTGTTTTATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTA
TCAATCTGGACCACTTGCTCTGTGCCGCTATGTCAGATCCGTTCCGGGGC
TCGAATTCCGGA
BS13446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-PA | 999 | CG14591-RA | 1..691 | 17..707 | 3380 | 99.5 | Plus |
CG14591-PB | 999 | CG14591-RB | 1..691 | 17..707 | 3380 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 1640 | CG14591-RD | 169..865 | 17..712 | 3415 | 99.4 | Plus |
CG14591-RC | 1627 | CG14591-RC | 156..852 | 17..712 | 3415 | 99.4 | Plus |
CG14591-RB | 1771 | CG14591-RB | 300..996 | 17..712 | 3415 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6038071..6038400 | 346..17 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 6037817..6038013 | 540..344 | 985 | 100 | Minus |
2R | 25286936 | 2R | 6037661..6037762 | 640..539 | 510 | 100 | Minus |
2R | 25286936 | 2R | 6037338..6037404 | 707..641 | 290 | 95.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:06:33 has no hits.
BS13446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:55 Download gff for
BS13446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-PB | 1..696 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:59 Download gff for
BS13446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..995 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:25 Download gff for
BS13446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..995 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:25 Download gff for
BS13446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6037333..6037404 | 641..711 | 94 | <- | Minus |
2R | 6037661..6037761 | 540..640 | 100 | <- | Minus |
2R | 6037818..6038010 | 347..539 | 100 | <- | Minus |
2R | 6038071..6038400 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:59 Download gff for
BS13446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1924838..1924909 | 641..711 | 94 | <- | Minus |
arm_2R | 1925166..1925266 | 540..640 | 100 | <- | Minus |
arm_2R | 1925323..1925515 | 347..539 | 100 | <- | Minus |
arm_2R | 1925576..1925905 | 17..346 | 100 | | Minus |
BS13446.complete Sequence
1031 bp assembled on 2006-11-01
GenBank Submission: FJ637454
> BS13446.complete
GAAGTTATCAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCG
ATGAGATTCCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGAT
CGACGTCGCTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTAT
AATGCACCGCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGC
ACGAGATACAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCC
TTGTCAATGATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTC
AATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTT
ATCTTTTGGCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATA
CAGATGAGCAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGT
GGAGGGCCGCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATG
CACTGCTCTATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACT
GTCGAGGACCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCAT
GCTGTTTTATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTA
TCAATCTGGACCACATGCTCTGTGCGGCTATGTCAGATCCGTTCCAGGGC
TCGAATTACCGGATATTTGCGTGCTGCCACCAAGCACTGCTCTGTCCGCT
GCTGAGTAAGGGCACAGTGGTGCTGTTCGGACGCCGGAATCGGAGCAGCA
GCGGCCTGACCGGATCGGGAAGTATGCCGGAGCCGAGGGGCGAGGCTGCC
CAGTATCACCAATTAACCCAAGGTGACTATGCCATGCAGGAGGAGGCGAT
ATTGCGACACCGATTTAGCAACCAGGAAGCGGTGGACGATGGACATCCGC
ATGACGCAGGGGAAATGGCGTCCCTTACAGCAGAGTACACCATGCCAACA
ACCAAGATCGACTAGAAGCTTTCTAGACCAT
BS13446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 999 | CG14591-PD | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG14591-RC | 999 | CG14591-PC | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG14591-RB | 999 | CG14591-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 1640 | CG14591-RD | 169..1167 | 17..1015 | 4995 | 100 | Plus |
CG14591-RC | 1627 | CG14591-RC | 156..1154 | 17..1015 | 4995 | 100 | Plus |
CG14591-RB | 1771 | CG14591-RB | 300..1298 | 17..1015 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6037030..6037404 | 1015..641 | 1875 | 100 | Minus |
2R | 25286936 | 2R | 6038071..6038400 | 346..17 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 6037817..6038013 | 540..344 | 985 | 100 | Minus |
2R | 25286936 | 2R | 6037661..6037762 | 640..539 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:56 has no hits.
BS13446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:19 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:58 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 301..1307 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:18 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..1298 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:19 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 301..1307 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:07 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..1298 | 17..1015 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:07 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6037030..6037404 | 641..1015 | 100 | <- | Minus |
2R | 6037661..6037761 | 540..640 | 100 | <- | Minus |
2R | 6037818..6038010 | 347..539 | 100 | <- | Minus |
2R | 6038071..6038400 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:18 Download gff for
BS13446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1924535..1924909 | 641..1015 | 100 | <- | Minus |
arm_2R | 1925166..1925266 | 540..640 | 100 | <- | Minus |
arm_2R | 1925323..1925515 | 347..539 | 100 | <- | Minus |
arm_2R | 1925576..1925905 | 17..346 | 100 | | Minus |
BS13446.pep Sequence
Translation from 16 to 1014
> BS13446.pep
MGWDWAVGGISDEIPRTTGPECINYMTDRRRWLETILLSALFIFIMHRSW
QRLAPIKLPPPHEIQKPHSPTRLFLLIALSMIFGIEMGFKLSGQSMIFAL
NPCHVQSCLQIYLLAAKPTKTTTALFRIQMSNLNGPFLAFLFPEVEGRTY
PFEQATYWIQHALLYIIPIYIIRSGAYTVEDLSEFHWSHIGTAFMLFYHF
ILLSPLSIFTGINLDHMLCAAMSDPFQGSNYRIFACCHQALLCPLLSKGT
VVLFGRRNRSSSGLTGSGSMPEPRGEAAQYHQLTQGDYAMQEEAILRHRF
SNQEAVDDGHPHDAGEMASLTAEYTMPTTKID*
BS13446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-PD | 332 | CG14591-PD | 1..332 | 1..332 | 1773 | 100 | Plus |
CG14591-PC | 332 | CG14591-PC | 1..332 | 1..332 | 1773 | 100 | Plus |
CG14591-PB | 332 | CG14591-PB | 1..332 | 1..332 | 1773 | 100 | Plus |
CG14591-PA | 332 | CG14591-PA | 1..332 | 1..332 | 1773 | 100 | Plus |