Clone BS13446 Report

Search the DGRC for BS13446

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG14591-RA
Protein status:BS13446.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13446.3prime Sequence

577 bp (543 high quality bases) assembled on 2006-10-13

> BS13446.3prime
ATGGTCTAGAAAGCTTCTAGTCGATCTTGGTTGTTGGCATGGTGTACTCT
GCTGTAAGGGACGCCATTTCCCCTGCGTCATGCGGATGTCCATCGTCCAC
CGCTTCCTGGTTGCTAAATCGGTGTCGCAATATCGCCTCCTCCTGCATGG
CATAGTCACCTTGGGTTAATTGGTGATACTGGGCAGCCTCGCCCCTCGGC
TCCGGCATACTTCCCGATCCGGTCAGGCCGCTGCTGCTCCGATTCCGGCG
TCCGAACAGCACCACTGTGCCCTTACTCAGCAGCGGACAGAGCAGTGCTT
GGTGGCAGCACGCAAATATCCGGTAATTCGAGCCCTGGAACGGATCTGAC
ATAGCCGCACAGAGCATGTGGTCCAGATTGATACCAGTAAAAATTGAGAG
CGGAGAGAGAAGGATGAAGTGATAAAACAGCATGAAGGCGGTACCTATAT
GTGACCAGTGGAACTCGCTGAGGTCCTCGACAGTGTACGCTCCGCTTCGG
ATAATGTAAATCGGTATTATATAGAGCAGTGCATGCTGGATCCAATAGGT
GGCCTGCTCGAAGGGATATGTGCGGCC

BS13446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-PA 999 CG14591-RA 439..999 577..17 2805 100 Minus
CG14591-PB 999 CG14591-RB 439..999 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-RD 1640 CG14591-RD 607..1167 577..17 2805 100 Minus
CG14591-RC 1627 CG14591-RC 594..1154 577..17 2805 100 Minus
CG14591-RB 1771 CG14591-RB 738..1298 577..17 2805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6037030..6037404 17..391 1875 100 Plus
2R 25286936 2R 6037661..6037762 392..493 510 100 Plus
2R 25286936 2R 6037817..6037902 492..577 430 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:39:32 has no hits.

BS13446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:54 Download gff for BS13446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14591-PB 439..999 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:43 Download gff for BS13446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 738..1306 8..577 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:56 Download gff for BS13446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 738..1306 8..577 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:56 Download gff for BS13446.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6037022..6037404 8..391 99 <- Plus
2R 6037661..6037761 392..492 100 <- Plus
2R 6037818..6037902 493..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:43 Download gff for BS13446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1924527..1924909 8..391 99 <- Plus
arm_2R 1925166..1925266 392..492 100 <- Plus
arm_2R 1925323..1925407 493..577 100   Plus

BS13446.5prime Sequence

712 bp (566 high quality bases) assembled on 2006-10-13

> BS13446.5prime
GAAGTTATCAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCG
ATGAGATTCCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGAT
CGACGTCGCTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTAT
AATGCACCGCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGC
ACGAGATACAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCC
TTGTCAATGATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTC
AATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTT
ATCTTTTGGCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATA
CAGATGAGCAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGT
GGAGGGCCGCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATG
CACTGCTCTATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACT
GTCGAGGACCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCAT
GCTGTTTTATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTA
TCAATCTGGACCACTTGCTCTGTGCCGCTATGTCAGATCCGTTCCGGGGC
TCGAATTCCGGA

BS13446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-PA 999 CG14591-RA 1..691 17..707 3380 99.5 Plus
CG14591-PB 999 CG14591-RB 1..691 17..707 3380 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-RD 1640 CG14591-RD 169..865 17..712 3415 99.4 Plus
CG14591-RC 1627 CG14591-RC 156..852 17..712 3415 99.4 Plus
CG14591-RB 1771 CG14591-RB 300..996 17..712 3415 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6038071..6038400 346..17 1650 100 Minus
2R 25286936 2R 6037817..6038013 540..344 985 100 Minus
2R 25286936 2R 6037661..6037762 640..539 510 100 Minus
2R 25286936 2R 6037338..6037404 707..641 290 95.5 Minus
Blast to na_te.dros performed on 2015-02-10 21:06:33 has no hits.

BS13446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:55 Download gff for BS13446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14591-PB 1..696 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:59 Download gff for BS13446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 300..995 17..711 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:25 Download gff for BS13446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 300..995 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:25 Download gff for BS13446.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6037333..6037404 641..711 94 <- Minus
2R 6037661..6037761 540..640 100 <- Minus
2R 6037818..6038010 347..539 100 <- Minus
2R 6038071..6038400 17..346 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:59 Download gff for BS13446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1924838..1924909 641..711 94 <- Minus
arm_2R 1925166..1925266 540..640 100 <- Minus
arm_2R 1925323..1925515 347..539 100 <- Minus
arm_2R 1925576..1925905 17..346 100   Minus

BS13446.complete Sequence

1031 bp assembled on 2006-11-01

GenBank Submission: FJ637454

> BS13446.complete
GAAGTTATCAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCG
ATGAGATTCCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGAT
CGACGTCGCTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTAT
AATGCACCGCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGC
ACGAGATACAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCC
TTGTCAATGATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTC
AATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTT
ATCTTTTGGCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATA
CAGATGAGCAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGT
GGAGGGCCGCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATG
CACTGCTCTATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACT
GTCGAGGACCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCAT
GCTGTTTTATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTA
TCAATCTGGACCACATGCTCTGTGCGGCTATGTCAGATCCGTTCCAGGGC
TCGAATTACCGGATATTTGCGTGCTGCCACCAAGCACTGCTCTGTCCGCT
GCTGAGTAAGGGCACAGTGGTGCTGTTCGGACGCCGGAATCGGAGCAGCA
GCGGCCTGACCGGATCGGGAAGTATGCCGGAGCCGAGGGGCGAGGCTGCC
CAGTATCACCAATTAACCCAAGGTGACTATGCCATGCAGGAGGAGGCGAT
ATTGCGACACCGATTTAGCAACCAGGAAGCGGTGGACGATGGACATCCGC
ATGACGCAGGGGAAATGGCGTCCCTTACAGCAGAGTACACCATGCCAACA
ACCAAGATCGACTAGAAGCTTTCTAGACCAT

BS13446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-RD 999 CG14591-PD 1..999 17..1015 4995 100 Plus
CG14591-RC 999 CG14591-PC 1..999 17..1015 4995 100 Plus
CG14591-RB 999 CG14591-PB 1..999 17..1015 4995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-RD 1640 CG14591-RD 169..1167 17..1015 4995 100 Plus
CG14591-RC 1627 CG14591-RC 156..1154 17..1015 4995 100 Plus
CG14591-RB 1771 CG14591-RB 300..1298 17..1015 4995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6037030..6037404 1015..641 1875 100 Minus
2R 25286936 2R 6038071..6038400 346..17 1650 100 Minus
2R 25286936 2R 6037817..6038013 540..344 985 100 Minus
2R 25286936 2R 6037661..6037762 640..539 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:33:56 has no hits.

BS13446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:19 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 1..999 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:58 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 301..1307 17..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:18 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 300..1298 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:19 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 301..1307 17..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:07 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
CG14591-RB 300..1298 17..1015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:07 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6037030..6037404 641..1015 100 <- Minus
2R 6037661..6037761 540..640 100 <- Minus
2R 6037818..6038010 347..539 100 <- Minus
2R 6038071..6038400 17..346 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:18 Download gff for BS13446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1924535..1924909 641..1015 100 <- Minus
arm_2R 1925166..1925266 540..640 100 <- Minus
arm_2R 1925323..1925515 347..539 100 <- Minus
arm_2R 1925576..1925905 17..346 100   Minus

BS13446.pep Sequence

Translation from 16 to 1014

> BS13446.pep
MGWDWAVGGISDEIPRTTGPECINYMTDRRRWLETILLSALFIFIMHRSW
QRLAPIKLPPPHEIQKPHSPTRLFLLIALSMIFGIEMGFKLSGQSMIFAL
NPCHVQSCLQIYLLAAKPTKTTTALFRIQMSNLNGPFLAFLFPEVEGRTY
PFEQATYWIQHALLYIIPIYIIRSGAYTVEDLSEFHWSHIGTAFMLFYHF
ILLSPLSIFTGINLDHMLCAAMSDPFQGSNYRIFACCHQALLCPLLSKGT
VVLFGRRNRSSSGLTGSGSMPEPRGEAAQYHQLTQGDYAMQEEAILRHRF
SNQEAVDDGHPHDAGEMASLTAEYTMPTTKID*

BS13446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14591-PD 332 CG14591-PD 1..332 1..332 1773 100 Plus
CG14591-PC 332 CG14591-PC 1..332 1..332 1773 100 Plus
CG14591-PB 332 CG14591-PB 1..332 1..332 1773 100 Plus
CG14591-PA 332 CG14591-PA 1..332 1..332 1773 100 Plus