Clone Sequence Records
BS13447.3prime Sequence
692 bp (671 high quality bases) assembled on 2006-10-13
> BS13447.3prime
ATGGTCTAGAAAGCTTTTATTTAAGGCCCCCGGTGACCTCGATGGCAGCC
CCATTGACGTATGACGATTGCGGGGAGGCCAAAAAGGCAATGACCTCGGC
GATCTCCTCCGGCTGACCCAATCGGCCCAAGGGGCATCGTTGTACCACCT
CCTGCTTTACAGAATCGGGCACAACCGCTACCATGGGCGTGTCTATGTAG
CCTGGCAGGATGCAGTTCACACGGATGCCAAACTTTCCGAACTCCTTGGA
GGCCACCTCCGTGAAGGAGATCACGCCCGCCTTGGTGGCCGCATAGTTGG
CCTGGCCCACGTTGTTCATCTTGGCCACGATGCTTGAGAGGTTCACAATG
GTGCCGTTTTCCAGTTTCTGCTCGATCATGGCCTTGGCATAGGCCTGGGT
AACCAGAAAGGTGCCCTTCAGATTGACCCCGTATACGTCATCGTAGTCCC
GTTCGGGCATCTTGAGCAGATAACCATCTCGGGTTATTCCAGCCGAATTG
ACCACAATAGTGGGTGCCTGCTGGAATTTCTTTAGGGCCTCGGCCACCGA
GAATTGAACACTCTGGGCAGAGGAAACGTCCACCTCCAGGGCGGCAGATC
GCTCAGAGCCCAATTCCTGTACGGTTTCTTGGGCCGCCTTTAGATTGCGG
TCAACGGCGATCACTTTTGGCACCATCTCTGGCCAAAAGGCG
BS13447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-PA | 750 | CG3603-RA | 100..750 | 667..17 | 3255 | 100 | Minus |
CG3603-PA | 750 | CG3603-RA | 76..102 | 692..666 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 1018 | CG3603-RB | 148..822 | 692..17 | 3355 | 99.9 | Minus |
CG3603-RA | 846 | CG3603-RA | 148..822 | 692..17 | 3355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2948250..2948924 | 692..17 | 3330 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:47:04 has no hits.
BS13447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:55 Download gff for
BS13447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-PA | 76..750 | 17..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:42 Download gff for
BS13447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 148..822 | 17..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:18 Download gff for
BS13447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 148..822 | 17..692 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:18 Download gff for
BS13447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2948250..2948924 | 17..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:42 Download gff for
BS13447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2842283..2842957 | 17..692 | 99 | | Minus |
BS13447.5prime Sequence
736 bp (604 high quality bases) assembled on 2006-10-13
> BS13447.5prime
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTTGGCTCCCCGCAATCGTCATACTTCATGGGGCTG
BS13447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-PA | 750 | CG3603-RA | 1..708 | 17..724 | 3490 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 1018 | CG3603-RB | 72..793 | 16..736 | 3540 | 99.4 | Plus |
CG3603-RA | 846 | CG3603-RA | 72..793 | 16..736 | 3540 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2948216..2948886 | 58..728 | 3310 | 99.6 | Plus |
X | 23542271 | X | 2948105..2948151 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:39:30 has no hits.
BS13447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:55 Download gff for
BS13447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-PA | 1..721 | 17..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:48 Download gff for
BS13447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 67..793 | 10..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:16 Download gff for
BS13447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 67..793 | 10..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:16 Download gff for
BS13447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2948100..2948148 | 10..59 | 94 | -> | Plus |
X | 2948218..2948895 | 60..736 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:48 Download gff for
BS13447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2842133..2842181 | 10..59 | 94 | -> | Plus |
arm_X | 2842251..2842928 | 60..736 | 99 | | Plus |
BS13447.complete Sequence
782 bp assembled on 2006-11-01
GenBank Submission: FJ637455
> BS13447.complete
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTGGCCTCCCCGCAATCGTCATACGTCAATGGGGCTGCCATCGAGGTCAC
CGGGGGCCTTAAATAAAAGCTTTCTAGACCAT
BS13447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 750 | CG3603-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG3603-RA | 750 | CG3603-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 1018 | CG3603-RB | 72..822 | 16..766 | 3755 | 100 | Plus |
CG3603-RA | 846 | CG3603-RA | 72..822 | 16..766 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2948216..2948924 | 58..766 | 3545 | 100 | Plus |
X | 23542271 | X | 2948105..2948151 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:20:24 has no hits.
BS13447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:20 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:00 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 65..820 | 10..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:44 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 73..820 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:20 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 65..820 | 10..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:14 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 73..820 | 17..764 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:14 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2948106..2948148 | 17..59 | 100 | -> | Plus |
X | 2948218..2948922 | 60..764 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:44 Download gff for
BS13447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2842139..2842181 | 17..59 | 100 | -> | Plus |
arm_X | 2842251..2842955 | 60..764 | 100 | | Plus |
BS13447.pep Sequence
Translation from 16 to 765
> BS13447.pep
MSVGVLAGKVALVTGAGSGIGRATCRLLARDGAKVIAVDRNLKAAQETVQ
ELGSERSAALEVDVSSAQSVQFSVAEALKKFQQAPTIVVNSAGITRDGYL
LKMPERDYDDVYGVNLKGTFLVTQAYAKAMIEQKLENGTIVNLSSIVAKM
NNVGQANYAATKAGVISFTEVASKEFGKFGIRVNCILPGYIDTPMVAVVP
DSVKQEVVQRCPLGRLGQPEEIAEVIAFLASPQSSYVNGAAIEVTGGLK*
BS13447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-PB | 249 | CG3603-PB | 1..249 | 1..249 | 1224 | 100 | Plus |
CG3603-PA | 249 | CG3603-PA | 1..249 | 1..249 | 1224 | 100 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..244 | 6..247 | 341 | 33.1 | Plus |
CG10672-PA | 317 | CG10672-PA | 69..313 | 6..248 | 311 | 32.8 | Plus |
scu-PA | 255 | CG7113-PA | 1..252 | 5..249 | 302 | 33.2 | Plus |