Clone BS13447 Report

Search the DGRC for BS13447

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG3603-RA
Protein status:BS13447.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13447.3prime Sequence

692 bp (671 high quality bases) assembled on 2006-10-13

> BS13447.3prime
ATGGTCTAGAAAGCTTTTATTTAAGGCCCCCGGTGACCTCGATGGCAGCC
CCATTGACGTATGACGATTGCGGGGAGGCCAAAAAGGCAATGACCTCGGC
GATCTCCTCCGGCTGACCCAATCGGCCCAAGGGGCATCGTTGTACCACCT
CCTGCTTTACAGAATCGGGCACAACCGCTACCATGGGCGTGTCTATGTAG
CCTGGCAGGATGCAGTTCACACGGATGCCAAACTTTCCGAACTCCTTGGA
GGCCACCTCCGTGAAGGAGATCACGCCCGCCTTGGTGGCCGCATAGTTGG
CCTGGCCCACGTTGTTCATCTTGGCCACGATGCTTGAGAGGTTCACAATG
GTGCCGTTTTCCAGTTTCTGCTCGATCATGGCCTTGGCATAGGCCTGGGT
AACCAGAAAGGTGCCCTTCAGATTGACCCCGTATACGTCATCGTAGTCCC
GTTCGGGCATCTTGAGCAGATAACCATCTCGGGTTATTCCAGCCGAATTG
ACCACAATAGTGGGTGCCTGCTGGAATTTCTTTAGGGCCTCGGCCACCGA
GAATTGAACACTCTGGGCAGAGGAAACGTCCACCTCCAGGGCGGCAGATC
GCTCAGAGCCCAATTCCTGTACGGTTTCTTGGGCCGCCTTTAGATTGCGG
TCAACGGCGATCACTTTTGGCACCATCTCTGGCCAAAAGGCG

BS13447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-PA 750 CG3603-RA 100..750 667..17 3255 100 Minus
CG3603-PA 750 CG3603-RA 76..102 692..666 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 1018 CG3603-RB 148..822 692..17 3355 99.9 Minus
CG3603-RA 846 CG3603-RA 148..822 692..17 3355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2948250..2948924 692..17 3330 99.9 Minus
Blast to na_te.dros performed on 2015-02-02 17:47:04 has no hits.

BS13447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:55 Download gff for BS13447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-PA 76..750 17..692 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:42 Download gff for BS13447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 148..822 17..692 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:18 Download gff for BS13447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 148..822 17..692 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:18 Download gff for BS13447.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2948250..2948924 17..692 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:42 Download gff for BS13447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2842283..2842957 17..692 99   Minus

BS13447.5prime Sequence

736 bp (604 high quality bases) assembled on 2006-10-13

> BS13447.5prime
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTTGGCTCCCCGCAATCGTCATACTTCATGGGGCTG

BS13447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-PA 750 CG3603-RA 1..708 17..724 3490 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 1018 CG3603-RB 72..793 16..736 3540 99.4 Plus
CG3603-RA 846 CG3603-RA 72..793 16..736 3540 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2948216..2948886 58..728 3310 99.6 Plus
X 23542271 X 2948105..2948151 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:39:30 has no hits.

BS13447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:55 Download gff for BS13447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-PA 1..721 17..736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:48 Download gff for BS13447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 67..793 10..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:16 Download gff for BS13447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 67..793 10..736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:16 Download gff for BS13447.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2948100..2948148 10..59 94 -> Plus
X 2948218..2948895 60..736 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:48 Download gff for BS13447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2842133..2842181 10..59 94 -> Plus
arm_X 2842251..2842928 60..736 99   Plus

BS13447.complete Sequence

782 bp assembled on 2006-11-01

GenBank Submission: FJ637455

> BS13447.complete
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTGGCCTCCCCGCAATCGTCATACGTCAATGGGGCTGCCATCGAGGTCAC
CGGGGGCCTTAAATAAAAGCTTTCTAGACCAT

BS13447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 750 CG3603-PB 1..750 17..766 3750 100 Plus
CG3603-RA 750 CG3603-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 1018 CG3603-RB 72..822 16..766 3755 100 Plus
CG3603-RA 846 CG3603-RA 72..822 16..766 3755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2948216..2948924 58..766 3545 100 Plus
X 23542271 X 2948105..2948151 16..62 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:20:24 has no hits.

BS13447.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:20 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:00 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 65..820 10..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:44 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 73..820 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:20 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 65..820 10..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:14 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 73..820 17..764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:14 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
X 2948106..2948148 17..59 100 -> Plus
X 2948218..2948922 60..764 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:44 Download gff for BS13447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2842139..2842181 17..59 100 -> Plus
arm_X 2842251..2842955 60..764 100   Plus

BS13447.pep Sequence

Translation from 16 to 765

> BS13447.pep
MSVGVLAGKVALVTGAGSGIGRATCRLLARDGAKVIAVDRNLKAAQETVQ
ELGSERSAALEVDVSSAQSVQFSVAEALKKFQQAPTIVVNSAGITRDGYL
LKMPERDYDDVYGVNLKGTFLVTQAYAKAMIEQKLENGTIVNLSSIVAKM
NNVGQANYAATKAGVISFTEVASKEFGKFGIRVNCILPGYIDTPMVAVVP
DSVKQEVVQRCPLGRLGQPEEIAEVIAFLASPQSSYVNGAAIEVTGGLK*

BS13447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-PB 249 CG3603-PB 1..249 1..249 1224 100 Plus
CG3603-PA 249 CG3603-PA 1..249 1..249 1224 100 Plus
CG3699-PA 251 CG3699-PA 3..244 6..247 341 33.1 Plus
CG10672-PA 317 CG10672-PA 69..313 6..248 311 32.8 Plus
scu-PA 255 CG7113-PA 1..252 5..249 302 33.2 Plus