Clone Sequence Records
BS13448.3prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS13448.3prime
ATGGTCTAGAAAGCTTCTAGACGAGCTGGTTGAGGATGCTGAAGCTGGCG
GAGGCCTTGTCGATCTCGTCGAAGTTCCGCTTGAGCTTACTGCTCCAGGT
GTCCTTGTACAGGGGGTCCATCCTCACCAGGTAGGGCACCAGGTCCCGGT
GATGGCCAGACCCGATCTTGCCGGCCGCGCACTGCTTCACCGAGTACTTC
GTCTTGAACTCCGACTGGCTGCACTCGTAGCAGACGACCGTTTGTCCATT
GGCAGCCGAAATCAATCTCACTATAAACGGTCCATCGTACTTCTTCGAGC
CAGCTTCACAAAGATATTTTCCATCCAGCAGTTCGTCGTTGGAAATATCC
ACACCGGGCGCTGCGTGAATGAAGTTCAGGAACACCGATACCACCGCCAG
GAGCACATATAGATTCATGTCGACTGATAACT
BS13448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-PA | 402 | CG13565-RA | 1..402 | 418..17 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 593 | CG13565-RA | 59..461 | 419..17 | 2015 | 100 | Minus |
CG13565-RC | 611 | CG13565-RC | 59..174 | 419..304 | 580 | 100 | Minus |
CG13565-RB | 1071 | CG13565-RB | 519..634 | 419..304 | 580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23947091..23947342 | 17..268 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23948488..23948558 | 349..419 | 355 | 100 | Plus |
2R | 25286936 | 2R | 23948352..23948398 | 304..350 | 235 | 100 | Plus |
2R | 25286936 | 2R | 23947616..23947655 | 267..306 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:42:21 has no hits.
BS13448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:56 Download gff for
BS13448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:16 Download gff for
BS13448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..461 | 17..419 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:39 Download gff for
BS13448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..461 | 17..419 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:39 Download gff for
BS13448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23947091..23947340 | 17..266 | 100 | <- | Plus |
2R | 23947616..23947652 | 267..303 | 100 | <- | Plus |
2R | 23948352..23948397 | 304..349 | 100 | <- | Plus |
2R | 23948489..23948558 | 350..419 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:16 Download gff for
BS13448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834614..19834863 | 17..266 | 100 | <- | Plus |
arm_2R | 19835139..19835175 | 267..303 | 100 | <- | Plus |
arm_2R | 19835875..19835920 | 304..349 | 100 | <- | Plus |
arm_2R | 19836012..19836081 | 350..419 | 100 | | Plus |
BS13448.5prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS13448.5prime
GAAGTTATCAGTCGACATGAATCTATATGTGCTCCTGGCGGTGGTATCGG
TGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGAC
GAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGA
TGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCG
TCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAG
CAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCC
CTACCTGGTGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGC
TCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATC
CTCAACCAGCTCGTCTAGAAGCTTTCTAGACC
BS13448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-PA | 402 | CG13565-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 593 | CG13565-RA | 59..461 | 16..418 | 2015 | 100 | Plus |
CG13565-RC | 611 | CG13565-RC | 59..174 | 16..131 | 580 | 100 | Plus |
CG13565-RB | 1071 | CG13565-RB | 519..634 | 16..131 | 580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23947091..23947342 | 418..167 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 23948488..23948558 | 86..16 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23948352..23948398 | 131..85 | 235 | 100 | Minus |
2R | 25286936 | 2R | 23947616..23947655 | 168..129 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:48:00 has no hits.
BS13448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:56 Download gff for
BS13448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:45 Download gff for
BS13448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..461 | 16..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:23 Download gff for
BS13448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..461 | 16..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:23 Download gff for
BS13448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23947091..23947340 | 169..418 | 100 | <- | Minus |
2R | 23947616..23947652 | 132..168 | 100 | <- | Minus |
2R | 23948352..23948397 | 86..131 | 100 | <- | Minus |
2R | 23948489..23948558 | 16..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:45 Download gff for
BS13448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834614..19834863 | 169..418 | 100 | <- | Minus |
arm_2R | 19835139..19835175 | 132..168 | 100 | <- | Minus |
arm_2R | 19835875..19835920 | 86..131 | 100 | <- | Minus |
arm_2R | 19836012..19836081 | 16..85 | 100 | | Minus |
BS13448.complete Sequence
434 bp assembled on 2006-11-01
GenBank Submission: FJ637456
> BS13448.complete
GAAGTTATCAGTCGACATGAATCTATATGTGCTCCTGGCGGTGGTATCGG
TGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGAC
GAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGA
TGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCG
TCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAG
CAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCC
CTACCTGGTGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGC
TCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATC
CTCAACCAGCTCGTCTAGAAGCTTTCTAGACCAT
BS13448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 402 | CG13565-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
CG13565-RC | 384 | CG13565-PC | 1..115 | 17..131 | 575 | 100 | Plus |
CG13565-RB | 384 | CG13565-PB | 1..115 | 17..131 | 575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 593 | CG13565-RA | 59..461 | 16..418 | 2015 | 100 | Plus |
CG13565-RC | 611 | CG13565-RC | 59..174 | 16..131 | 580 | 100 | Plus |
CG13565-RB | 1071 | CG13565-RB | 519..634 | 16..131 | 580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23947091..23947342 | 418..167 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 23948488..23948558 | 86..16 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23948352..23948398 | 131..85 | 235 | 100 | Minus |
2R | 25286936 | 2R | 23947616..23947655 | 168..129 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:53:24 has no hits.
BS13448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:55 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:34 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 57..459 | 16..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:42 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 60..461 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:56 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 57..459 | 16..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:07 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 60..461 | 17..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:07 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23947091..23947340 | 169..418 | 100 | <- | Minus |
2R | 23947616..23947652 | 132..168 | 100 | <- | Minus |
2R | 23948352..23948397 | 86..131 | 100 | <- | Minus |
2R | 23948489..23948557 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:42 Download gff for
BS13448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834614..19834863 | 169..418 | 100 | <- | Minus |
arm_2R | 19835139..19835175 | 132..168 | 100 | <- | Minus |
arm_2R | 19835875..19835920 | 86..131 | 100 | <- | Minus |
arm_2R | 19836012..19836080 | 17..85 | 100 | | Minus |
BS13448.pep Sequence
Translation from 16 to 417
> BS13448.pep
MNLYVLLAVVSVFLNFIHAAPGVDISNDELLDGKYLCEAGSKKYDGPFIV
RLISAANGQTVVCYECSQSEFKTKYSVKQCAAGKIGSGHHRDLVPYLVRM
DPLYKDTWSSKLKRNFDEIDKASASFSILNQLV*
BS13448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-PA | 133 | CG13565-PA | 1..133 | 1..133 | 691 | 100 | Plus |
CG13565-PC | 127 | CG13565-PC | 1..38 | 1..38 | 194 | 100 | Plus |
CG13565-PB | 127 | CG13565-PB | 1..38 | 1..38 | 194 | 100 | Plus |