Clone BS13450 Report

Search the DGRC for BS13450

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptmiple-RA
Protein status:BS13450.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13450.3prime Sequence

588 bp (542 high quality bases) assembled on 2006-10-13

> BS13450.3prime
ATGGTCTAGAAAGCTTTTAAACGCGTCCTTTGCGAGCAGCTTTATCTTTG
TTCTTCCGCTGCTCCTTGGCACTTTTGTCCTTGGACTTTCCGGGCTTGCA
GTTCTTCTTGATGACCCGCGTGGCTTCGCAGGACGGATCACTGCTCGCTT
TCAACTTATCAGCTCTAGTCATTTGTCCGGTTGCACATTCCGACCAAGAT
CCCTTTTCATATCGACAGGCTTTTTTACATTTCTTCTGAATGGTTCGCGT
TTGGTCGCATGCCGGGTCGCCCTTCTTTAATGTCAATGTTCTTGAACGCG
TATTGGTTTTGGTGTCACACTCAGTCCACGGATTTTTGCCATATCGACAA
GACAGACCGTCGCTCTTGGTGCCACGTTCATTTCTTATAAGCACTTCGTG
ATCGTCCTCCTCCCATACTTCTCCTTGTATGGCTGTAGTGGGCTGCGTCT
GCTCCGCCACAGGAAGGGCCAAAGGTGTTTCCTGGCCTTCTGTGGTGCCC
AGTACCGTGCTGCACATCACCCCCGACCAAGTCACTAGCGATGCCAGGAA
AAGCGCGTTGCAATTAATTCTCATGTCGACTGATAACT

BS13450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1221-PA 558 miple-RA 1..558 574..17 2790 100 Minus
CG1221-PB 558 miple-RB 1..558 574..17 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 1891 CG1221-RC 116..674 575..17 2795 100 Minus
miple-RB 1888 CG1221-RB 113..671 575..17 2795 100 Minus
miple-RA 1904 CG1221-RA 129..687 575..17 2795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 268242..268461 575..356 1100 100 Minus
3L 28110227 3L 268779..268960 221..40 910 100 Minus
3L 28110227 3L 268562..268700 358..220 695 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:21:39 has no hits.

BS13450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:57 Download gff for BS13450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1221-PB 1..558 17..574 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:39 Download gff for BS13450.3prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..695 9..581 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:43 Download gff for BS13450.3prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..695 9..581 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:43 Download gff for BS13450.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 268781..268960 40..219 100 -> Minus
3L 268234..268459 358..581 99 -> Minus
3L 268563..268700 220..357 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:39 Download gff for BS13450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268234..268459 358..581 99 -> Minus
arm_3L 268563..268700 220..357 100 -> Minus
arm_3L 268781..268960 40..219 100 -> Minus

BS13450.5prime Sequence

589 bp (589 high quality bases) assembled on 2006-10-13

> BS13450.5prime
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAAAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTTTAAAAGCTTTCTAGACC

BS13450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1221-PA 558 miple-RA 1..556 17..572 2755 99.8 Plus
CG1221-PB 558 miple-RB 1..556 17..572 2755 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 1891 CG1221-RC 116..672 16..572 2770 99.8 Plus
miple-RB 1888 CG1221-RB 113..669 16..572 2770 99.8 Plus
miple-RA 1904 CG1221-RA 129..685 16..572 2770 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 268242..268461 16..235 1100 100 Plus
3L 28110227 3L 268779..268960 370..551 895 99.5 Plus
3L 28110227 3L 268562..268700 233..371 695 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:14:57 has no hits.

BS13450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:58 Download gff for BS13450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1221-PB 1..558 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:52 Download gff for BS13450.5prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..687 10..575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:46 Download gff for BS13450.5prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..687 10..575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:46 Download gff for BS13450.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 268234..268459 10..233 99 -> Plus
3L 268563..268700 234..371 100 -> Plus
3L 268781..268960 372..551 99 -> Plus
3L 269097..269119 552..575 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:52 Download gff for BS13450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268781..268960 372..551 99 -> Plus
arm_3L 268234..268459 10..233 99 -> Plus
arm_3L 268563..268700 234..371 100 -> Plus
arm_3L 269097..269119 552..575 95   Plus

BS13450.complete Sequence

590 bp assembled on 2006-11-01

GenBank Submission: FJ637457

> BS13450.complete
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTTAAAAGCTTTCTAGACCAT

BS13450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 558 CG1221-PC 1..558 17..574 2790 100 Plus
miple-RB 558 CG1221-PB 1..558 17..574 2790 100 Plus
miple-RA 558 CG1221-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 1891 CG1221-RC 116..674 16..574 2795 100 Plus
miple-RB 1888 CG1221-RB 113..671 16..574 2795 100 Plus
miple-RA 1904 CG1221-RA 129..687 16..574 2795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 268242..268461 16..235 1100 100 Plus
3L 28110227 3L 268779..268960 370..551 910 100 Plus
3L 28110227 3L 268562..268700 233..371 695 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:58:06 has no hits.

BS13450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:48 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 1..558 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:47 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..695 10..582 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:15 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 130..685 17..572 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:49 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 105..679 10..582 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:56 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 130..685 17..572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:56 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
3L 268243..268459 17..233 100 -> Plus
3L 268563..268700 234..371 100 -> Plus
3L 268781..268960 372..551 100 -> Plus
3L 269097..269117 552..572 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:15 Download gff for BS13450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268243..268459 17..233 100 -> Plus
arm_3L 268563..268700 234..371 100 -> Plus
arm_3L 268781..268960 372..551 100 -> Plus
arm_3L 269097..269117 552..572 100   Plus

BS13450.pep Sequence

Translation from 16 to 573

> BS13450.pep
MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ
GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK
KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE
ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRV*

BS13450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
miple-PC 185 CG1221-PC 1..185 1..185 989 100 Plus
miple-PB 185 CG1221-PB 1..185 1..185 989 100 Plus
miple-PA 185 CG1221-PA 1..185 1..185 989 100 Plus
miple2-PE 281 CG18321-PE 152..279 69..185 312 47.7 Plus
miple2-PG 279 CG18321-PG 152..274 69..180 310 49.6 Plus