Clone Sequence Records
BS13450.3prime Sequence
588 bp (542 high quality bases) assembled on 2006-10-13
> BS13450.3prime
ATGGTCTAGAAAGCTTTTAAACGCGTCCTTTGCGAGCAGCTTTATCTTTG
TTCTTCCGCTGCTCCTTGGCACTTTTGTCCTTGGACTTTCCGGGCTTGCA
GTTCTTCTTGATGACCCGCGTGGCTTCGCAGGACGGATCACTGCTCGCTT
TCAACTTATCAGCTCTAGTCATTTGTCCGGTTGCACATTCCGACCAAGAT
CCCTTTTCATATCGACAGGCTTTTTTACATTTCTTCTGAATGGTTCGCGT
TTGGTCGCATGCCGGGTCGCCCTTCTTTAATGTCAATGTTCTTGAACGCG
TATTGGTTTTGGTGTCACACTCAGTCCACGGATTTTTGCCATATCGACAA
GACAGACCGTCGCTCTTGGTGCCACGTTCATTTCTTATAAGCACTTCGTG
ATCGTCCTCCTCCCATACTTCTCCTTGTATGGCTGTAGTGGGCTGCGTCT
GCTCCGCCACAGGAAGGGCCAAAGGTGTTTCCTGGCCTTCTGTGGTGCCC
AGTACCGTGCTGCACATCACCCCCGACCAAGTCACTAGCGATGCCAGGAA
AAGCGCGTTGCAATTAATTCTCATGTCGACTGATAACT
BS13450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1221-PA | 558 | miple-RA | 1..558 | 574..17 | 2790 | 100 | Minus |
CG1221-PB | 558 | miple-RB | 1..558 | 574..17 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 1891 | CG1221-RC | 116..674 | 575..17 | 2795 | 100 | Minus |
miple-RB | 1888 | CG1221-RB | 113..671 | 575..17 | 2795 | 100 | Minus |
miple-RA | 1904 | CG1221-RA | 129..687 | 575..17 | 2795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 268242..268461 | 575..356 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 268779..268960 | 221..40 | 910 | 100 | Minus |
3L | 28110227 | 3L | 268562..268700 | 358..220 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:21:39 has no hits.
BS13450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:57 Download gff for
BS13450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1221-PB | 1..558 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:39 Download gff for
BS13450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..695 | 9..581 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:43 Download gff for
BS13450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..695 | 9..581 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:43 Download gff for
BS13450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 268781..268960 | 40..219 | 100 | -> | Minus |
3L | 268234..268459 | 358..581 | 99 | -> | Minus |
3L | 268563..268700 | 220..357 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:39 Download gff for
BS13450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 268234..268459 | 358..581 | 99 | -> | Minus |
arm_3L | 268563..268700 | 220..357 | 100 | -> | Minus |
arm_3L | 268781..268960 | 40..219 | 100 | -> | Minus |
BS13450.5prime Sequence
589 bp (589 high quality bases) assembled on 2006-10-13
> BS13450.5prime
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAAAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTTTAAAAGCTTTCTAGACC
BS13450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1221-PA | 558 | miple-RA | 1..556 | 17..572 | 2755 | 99.8 | Plus |
CG1221-PB | 558 | miple-RB | 1..556 | 17..572 | 2755 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 1891 | CG1221-RC | 116..672 | 16..572 | 2770 | 99.8 | Plus |
miple-RB | 1888 | CG1221-RB | 113..669 | 16..572 | 2770 | 99.8 | Plus |
miple-RA | 1904 | CG1221-RA | 129..685 | 16..572 | 2770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 268242..268461 | 16..235 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 268779..268960 | 370..551 | 895 | 99.5 | Plus |
3L | 28110227 | 3L | 268562..268700 | 233..371 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:14:57 has no hits.
BS13450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:58 Download gff for
BS13450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1221-PB | 1..558 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:52 Download gff for
BS13450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..687 | 10..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:46 Download gff for
BS13450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..687 | 10..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:46 Download gff for
BS13450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 268234..268459 | 10..233 | 99 | -> | Plus |
3L | 268563..268700 | 234..371 | 100 | -> | Plus |
3L | 268781..268960 | 372..551 | 99 | -> | Plus |
3L | 269097..269119 | 552..575 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:52 Download gff for
BS13450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 268781..268960 | 372..551 | 99 | -> | Plus |
arm_3L | 268234..268459 | 10..233 | 99 | -> | Plus |
arm_3L | 268563..268700 | 234..371 | 100 | -> | Plus |
arm_3L | 269097..269119 | 552..575 | 95 | | Plus |
BS13450.complete Sequence
590 bp assembled on 2006-11-01
GenBank Submission: FJ637457
> BS13450.complete
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTTAAAAGCTTTCTAGACCAT
BS13450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 558 | CG1221-PC | 1..558 | 17..574 | 2790 | 100 | Plus |
miple-RB | 558 | CG1221-PB | 1..558 | 17..574 | 2790 | 100 | Plus |
miple-RA | 558 | CG1221-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 1891 | CG1221-RC | 116..674 | 16..574 | 2795 | 100 | Plus |
miple-RB | 1888 | CG1221-RB | 113..671 | 16..574 | 2795 | 100 | Plus |
miple-RA | 1904 | CG1221-RA | 129..687 | 16..574 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 268242..268461 | 16..235 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 268779..268960 | 370..551 | 910 | 100 | Plus |
3L | 28110227 | 3L | 268562..268700 | 233..371 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:58:06 has no hits.
BS13450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:48 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RB | 1..558 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:47 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..695 | 10..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:15 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 130..685 | 17..572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:49 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RB | 105..679 | 10..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:56 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 130..685 | 17..572 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:56 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 268243..268459 | 17..233 | 100 | -> | Plus |
3L | 268563..268700 | 234..371 | 100 | -> | Plus |
3L | 268781..268960 | 372..551 | 100 | -> | Plus |
3L | 269097..269117 | 552..572 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:15 Download gff for
BS13450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 268243..268459 | 17..233 | 100 | -> | Plus |
arm_3L | 268563..268700 | 234..371 | 100 | -> | Plus |
arm_3L | 268781..268960 | 372..551 | 100 | -> | Plus |
arm_3L | 269097..269117 | 552..572 | 100 | | Plus |
BS13450.pep Sequence
Translation from 16 to 573
> BS13450.pep
MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ
GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK
KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE
ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRV*
BS13450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-PC | 185 | CG1221-PC | 1..185 | 1..185 | 989 | 100 | Plus |
miple-PB | 185 | CG1221-PB | 1..185 | 1..185 | 989 | 100 | Plus |
miple-PA | 185 | CG1221-PA | 1..185 | 1..185 | 989 | 100 | Plus |
miple2-PE | 281 | CG18321-PE | 152..279 | 69..185 | 312 | 47.7 | Plus |
miple2-PG | 279 | CG18321-PG | 152..274 | 69..180 | 310 | 49.6 | Plus |