Clone BS13451 Report

Search the DGRC for BS13451

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS6-RA
Protein status:BS13451.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13451.3prime Sequence

474 bp (474 high quality bases) assembled on 2006-10-13

> BS13451.3prime
ATGGTCTAGAAAGCTTTTATTTTTGGAAGGGATAGTAGTCCAGGCCGGAG
TTGTAGTTGAACTTCTTCTTTTGCTTCTTCTGGGCGGCCGCAATGATCTC
CTGCACATCCTTGCGATACGCGGGTGGCAGCATCTCCTCGTGCAGCGTGC
AGGGCTTCTGCTCGGGCTCCTCCACCTTGAAGATGTAGCGCCGTATGATG
TCGATGTCGCGGCCAAACTCCTCCTTCAAGTCTGCGATCTTAGTGGGCGC
CGTATCAAAGGCGATGGTGAAGTGGGTGCCTTCCCGGTGAACCACCCCGT
GTTCGCTGACTTTGTGGGGCAGGGCGCGGGATCCCAGGTTCTCCAGCTTC
CGGATAATGCCGCCCTTGTCCAGGATGGACTCGGCCGTTCGCCTAATCAC
GGAAATCAGTTCGGGGCGAGGCAATTGGCGGAGCACCAGTGCTAGTTCGT
AAGAAGGCATGTCGACTGATAACT

BS13451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15016-PA 444 mRpS6-RA 1..444 460..17 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 628 CG15016-RB 152..597 460..15 2230 100 Minus
mRpS6-RA 535 CG15016-RA 59..504 460..15 2230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4364812..4365212 415..15 2005 100 Minus
3L 28110227 3L 4364701..4364745 460..416 225 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:49:40 has no hits.

BS13451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:58 Download gff for BS13451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15016-PA 1..444 17..460 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:53 Download gff for BS13451.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..504 15..466 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:34 Download gff for BS13451.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..504 15..466 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:34 Download gff for BS13451.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4364695..4364745 416..466 96 -> Minus
3L 4364812..4365212 15..415 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:53 Download gff for BS13451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4364695..4364745 416..466 96 -> Minus
arm_3L 4364812..4365212 15..415 100   Minus

BS13451.5prime Sequence

474 bp (474 high quality bases) assembled on 2006-10-13

> BS13451.5prime
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAATAAAAGCTTTCTAGACC

BS13451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15016-PA 444 mRpS6-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 628 CG15016-RB 152..597 17..462 2230 100 Plus
mRpS6-RA 535 CG15016-RA 59..504 17..462 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4364812..4365212 62..462 2005 100 Plus
3L 28110227 3L 4364701..4364745 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:22:34 has no hits.

BS13451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:58 Download gff for BS13451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15016-PA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:43 Download gff for BS13451.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..504 11..462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:49 Download gff for BS13451.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..504 11..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:49 Download gff for BS13451.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4364695..4364745 11..61 96 -> Plus
3L 4364812..4365212 62..462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:43 Download gff for BS13451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4364695..4364745 11..61 96 -> Plus
arm_3L 4364812..4365212 62..462 100   Plus

BS13451.complete Sequence

476 bp assembled on 2006-11-01

GenBank Submission: FJ637458

> BS13451.complete
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAATAAAAGCTTTCTAGACCAT

BS13451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 444 CG15016-PB 1..444 17..460 2220 100 Plus
mRpS6-RA 444 CG15016-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 628 CG15016-RB 152..597 17..462 2230 100 Plus
mRpS6-RA 535 CG15016-RA 59..504 17..462 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4364812..4365212 62..462 2005 100 Plus
3L 28110227 3L 4364701..4364745 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:58:23 has no hits.

BS13451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:26 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:09 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 141..592 11..462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:54 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 59..494 17..452 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:27 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 141..592 11..462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:29 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 59..494 17..452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:29 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4364701..4364745 17..61 100 -> Plus
3L 4364812..4365202 62..452 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:54 Download gff for BS13451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4364701..4364745 17..61 100 -> Plus
arm_3L 4364812..4365202 62..452 100   Plus

BS13451.pep Sequence

Translation from 16 to 459

> BS13451.pep
MPSYELALVLRQLPRPELISVIRRTAESILDKGGIIRKLENLGSRALPHK
VSEHGVVHREGTHFTIAFDTAPTKIADLKEEFGRDIDIIRRYIFKVEEPE
QKPCTLHEEMLPPAYRKDVQEIIAAAQKKQKKKFNYNSGLDYYPFQK*

BS13451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-PB 147 CG15016-PB 1..147 1..147 760 100 Plus
mRpS6-PA 147 CG15016-PA 1..147 1..147 760 100 Plus