Clone Sequence Records
BS13451.3prime Sequence
474 bp (474 high quality bases) assembled on 2006-10-13
> BS13451.3prime
ATGGTCTAGAAAGCTTTTATTTTTGGAAGGGATAGTAGTCCAGGCCGGAG
TTGTAGTTGAACTTCTTCTTTTGCTTCTTCTGGGCGGCCGCAATGATCTC
CTGCACATCCTTGCGATACGCGGGTGGCAGCATCTCCTCGTGCAGCGTGC
AGGGCTTCTGCTCGGGCTCCTCCACCTTGAAGATGTAGCGCCGTATGATG
TCGATGTCGCGGCCAAACTCCTCCTTCAAGTCTGCGATCTTAGTGGGCGC
CGTATCAAAGGCGATGGTGAAGTGGGTGCCTTCCCGGTGAACCACCCCGT
GTTCGCTGACTTTGTGGGGCAGGGCGCGGGATCCCAGGTTCTCCAGCTTC
CGGATAATGCCGCCCTTGTCCAGGATGGACTCGGCCGTTCGCCTAATCAC
GGAAATCAGTTCGGGGCGAGGCAATTGGCGGAGCACCAGTGCTAGTTCGT
AAGAAGGCATGTCGACTGATAACT
BS13451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15016-PA | 444 | mRpS6-RA | 1..444 | 460..17 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 628 | CG15016-RB | 152..597 | 460..15 | 2230 | 100 | Minus |
mRpS6-RA | 535 | CG15016-RA | 59..504 | 460..15 | 2230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4364812..4365212 | 415..15 | 2005 | 100 | Minus |
3L | 28110227 | 3L | 4364701..4364745 | 460..416 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:49:40 has no hits.
BS13451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:58 Download gff for
BS13451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15016-PA | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:53 Download gff for
BS13451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..504 | 15..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:34 Download gff for
BS13451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..504 | 15..466 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:34 Download gff for
BS13451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4364695..4364745 | 416..466 | 96 | -> | Minus |
3L | 4364812..4365212 | 15..415 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:53 Download gff for
BS13451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4364695..4364745 | 416..466 | 96 | -> | Minus |
arm_3L | 4364812..4365212 | 15..415 | 100 | | Minus |
BS13451.5prime Sequence
474 bp (474 high quality bases) assembled on 2006-10-13
> BS13451.5prime
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAATAAAAGCTTTCTAGACC
BS13451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15016-PA | 444 | mRpS6-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 628 | CG15016-RB | 152..597 | 17..462 | 2230 | 100 | Plus |
mRpS6-RA | 535 | CG15016-RA | 59..504 | 17..462 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4364812..4365212 | 62..462 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 4364701..4364745 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:22:34 has no hits.
BS13451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:58 Download gff for
BS13451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15016-PA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:43 Download gff for
BS13451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..504 | 11..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:49 Download gff for
BS13451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..504 | 11..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:49 Download gff for
BS13451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4364695..4364745 | 11..61 | 96 | -> | Plus |
3L | 4364812..4365212 | 62..462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:43 Download gff for
BS13451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4364695..4364745 | 11..61 | 96 | -> | Plus |
arm_3L | 4364812..4365212 | 62..462 | 100 | | Plus |
BS13451.complete Sequence
476 bp assembled on 2006-11-01
GenBank Submission: FJ637458
> BS13451.complete
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAATAAAAGCTTTCTAGACCAT
BS13451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 444 | CG15016-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
mRpS6-RA | 444 | CG15016-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 628 | CG15016-RB | 152..597 | 17..462 | 2230 | 100 | Plus |
mRpS6-RA | 535 | CG15016-RA | 59..504 | 17..462 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4364812..4365212 | 62..462 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 4364701..4364745 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:58:23 has no hits.
BS13451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:26 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:09 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 141..592 | 11..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:54 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 59..494 | 17..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:27 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 141..592 | 11..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:29 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 59..494 | 17..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:29 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4364701..4364745 | 17..61 | 100 | -> | Plus |
3L | 4364812..4365202 | 62..452 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:54 Download gff for
BS13451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4364701..4364745 | 17..61 | 100 | -> | Plus |
arm_3L | 4364812..4365202 | 62..452 | 100 | | Plus |
BS13451.pep Sequence
Translation from 16 to 459
> BS13451.pep
MPSYELALVLRQLPRPELISVIRRTAESILDKGGIIRKLENLGSRALPHK
VSEHGVVHREGTHFTIAFDTAPTKIADLKEEFGRDIDIIRRYIFKVEEPE
QKPCTLHEEMLPPAYRKDVQEIIAAAQKKQKKKFNYNSGLDYYPFQK*
BS13451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-PB | 147 | CG15016-PB | 1..147 | 1..147 | 760 | 100 | Plus |
mRpS6-PA | 147 | CG15016-PA | 1..147 | 1..147 | 760 | 100 | Plus |