Clone BS13453 Report

Search the DGRC for BS13453

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptScgalpha-RA
Protein status:BS13453.pep: full length peptide match
Sequenced Size:1363

Clone Sequence Records

BS13453.5prime Sequence

608 bp (574 high quality bases) assembled on 2006-10-13

> BS13453.5prime
GAAGTTATCAGTCGACATGAAGTTTTTAAACTTAATAGTGGTCGTATTAG
CTTTAATCTGCAACGAAGTTCAGGGTCTAAAGTTGCAGGCAAATGTTGGA
GAACTCTTCACCTACAAAATCGAACCGCAACTCTTTAACTGGACACACCA
GGTGATCAGCCAGCAATTTCGCTACAGACCCTCGCTGAAGAATTATCCCG
ATTTGCCCAGTTGGATGCGATATATGTATAGCCATGAATACCATGCCGGC
TTCCTCTACGGAACTCCTCCAGCATCGTCGGCTGGCAAGGATCTAAGTCT
GGATGTGGTCGCCCTTAATCGCCAGAATTACGAAACGCGACGCGTTGTGG
TCACAATGTTTGTCGCCCACAAGTTTCCCACACCCAATGTCGTGCAGATG
AAAATAAACAATCTGAATTGGGTGCACCTAATGGATCCCGGCAGAAGGGA
GAACCTACGAAATATATTCCGCAACGATCTTTGGCCAAATAGCAAGGAGG
ACTTGAGTGTGGTCTTCATGGAGTCAGCTGTGAATATGGGCGGACGACTT
CCACTGCGACCGCAGCAGCGCGAGGGAGTCATTGTCCACGTGGGCAGTTT
TGCCCGTT

BS13453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7851-PA 1332 Scgalpha-RA 1..589 17..605 2920 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-RC 1657 CG7851-RC 113..701 17..605 2930 99.8 Plus
Scgalpha-RB 1546 CG7851-RB 113..701 17..605 2930 99.8 Plus
Scgalpha-RA 1657 CG7851-RA 113..701 17..605 2930 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8303541..8304100 17..576 2800 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:51:09 has no hits.

BS13453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:59 Download gff for BS13453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7851-PA 1..593 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:46 Download gff for BS13453.5prime
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 113..705 17..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:34 Download gff for BS13453.5prime
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 113..705 17..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:34 Download gff for BS13453.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8303541..8304100 17..576 100 -> Plus
2L 8304173..8304205 577..608 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:46 Download gff for BS13453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8303541..8304100 17..576 100 -> Plus
arm_2L 8304173..8304205 577..608 93   Plus

BS13453.3prime Sequence

622 bp (583 high quality bases) assembled on 2006-10-13

> BS13453.3prime
ATGGTCTAGAAAGCTTCAAATGTCCACTCCATTTCGACCCAAAGTACCGC
CCTTATATGGCGGTGGCTTGGGACGAGCATAAATGCTGGAGTTTCCGCAG
TCCAACTGGTAAAAGCTGTTGTTGGGACTCTGAGATCTCATGCTAGTGTT
GTCCAGTAGAAAATTGGGATCCTTGAGGCTTTTCAATGTTGTTATGGGCT
GATTGGATTTGCTATCCGAACACTGAACCATCTGCACAGTGGATGCCATG
GGATAATCCGAATTGGAAGAGCTCTCAGAACCATCATCCGCACCAGAATC
GCTTGACGCGCTTTGCGGCGCACAGGACTCTTCGCAGATGTGGAAAATGT
TGGCAAAGAAAAACTCAGAATGCGGATCGTAAAACTTCTCGTGCTGGAAA
CACAAAACAGCTGATAGCATTCCGATTAAAATGGCAAAAATCATGCCCGG
AATGGCAAAGGCAAAGGCGAATTCATCGATGTAATTGCGTTCGGGCACAT
CCTCCCTGGCGATTCCCATCCAGCGATCCTCTTGCCTCTGATTCAGATCA
TCGGGCATCTGCTGCTCGTTCTGCTTGCCACTGTGGAAAAGGATTTCCGT
TGGTGATTCCATGCCCACCATT

BS13453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7851-PA 1332 Scgalpha-RA 726..1332 622..16 3010 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-RC 1657 CG7851-RC 838..1444 622..16 3020 99.8 Minus
Scgalpha-RA 1657 CG7851-RA 838..1444 622..16 3020 99.8 Minus
Scgalpha-RB 1546 CG7851-RB 1078..1333 271..16 1280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8304338..8304577 622..383 1185 99.6 Minus
2L 23513712 2L 8304842..8304987 273..128 730 100 Minus
2L 23513712 2L 8305050..8305163 129..16 570 100 Minus
2L 23513712 2L 8304662..8304772 382..272 555 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:14:26 has no hits.

BS13453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:59 Download gff for BS13453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7851-PA 726..1332 16..622 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:59 Download gff for BS13453.3prime
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 838..1444 16..622 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:21:12 Download gff for BS13453.3prime
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 838..1444 16..622 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:21:12 Download gff for BS13453.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8304338..8304577 383..622 99 -> Minus
2L 8304662..8304772 272..382 100 -> Minus
2L 8304844..8304987 128..271 100 -> Minus
2L 8305052..8305163 16..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:59 Download gff for BS13453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8304338..8304577 383..622 99 -> Minus
arm_2L 8304662..8304772 272..382 100 -> Minus
arm_2L 8304844..8304987 128..271 100 -> Minus
arm_2L 8305052..8305163 16..127 100   Minus

BS13453.complete Sequence

1363 bp assembled on 2009-08-24

GenBank Submission: KX804628

> BS13453.complete
GAAGTTATCAGTCGACATGAAGTTTTTAAACTTAATAGTGGTCGTATTAG
CTTTAATCTGCAACGAAGTTCAGGGTCTAAAGTTGCAGGCAAATGTTGGA
GAACTCTTCACCTACAAAATCGAACCGCAACTCTTTAACTGGACACACCA
GGTGATCAGCCAGCAATTTCGCTACAGACCCTCGCTGAAGAATTATCCCG
ATTTGCCCAGTTGGATGCGATATATGTATAGCCATGAATACCATGCCGGC
TTCCTCTACGGAACTCCTCCAGCATCGTCGGCTGGCAAGGATCTAAGTCT
GGATGTGGTCGCCCTTAATCGCCAGAATTACGAAACGCGACGCGTTGTGG
TCACAATGTTTGTCGCCCACAAGTTTCCCACACCCAATGTCGTGCAGATG
AAAATAAACAATCTGAATTGGGTGCACCTAATGGATCCCGGCAGAAGGGA
GAACCTACGAAATATATTCCGCAACGATCTTTGGCCAAATAGCAAGGAGG
ACTTGAGTGTGGTCTTCATGGAGTCAGCTGTGAATATGGGCGGACGACTT
CCACTGCGACCGCAGCAGCGCGAGGGAGTCATTGTCCACGTGGGCAGCTT
TGCCCAGTTCTCACCGCGGCTGCAGGAACTCCAGGAGGAAGTGAGACCAC
TGTACAAGTTGCCATCTTGCACCTACAAACGCACATCCGTGCAGAAAATC
TTTGAGAATGTTGGCTTCAAACTGGACTGGTGCGCCTTTCGAATGGTGGG
CATGGAATCACCAACGGAAATCCTCTTCCACAGTGGCAAGCAGAACGAGC
AGCAGATGCCCGATGATCTGAATCAGAGGCAAGAGGATCGCTGGATGGGA
ATCGCCAGGGAGGATGTGCCCGAACGCAATTACATCGATGAATTCGCCTT
TGCCTTTGCCATTCCGGGCATGATTTTTGCCATTTTAATCGGAATGCTAT
CAGCTGTTTTGTGTTTCCAGCACGAGAAGTTTTACGATCCGCATTCTGAG
TTTTTCTTTGCCAACATTTTCCACATCTGCGAAGAGTCCTGTGCGCCGCA
AAGCGCGTCAAGCGATTCTGGTGCGGATGATGGTTCTGAGAGCTCTTCCA
ATTCGGATTATCCCATGGCATCCACTGTGCAGATGGTTCAGTGTTCGGAT
AGCAAATCCAATCAGCCCATAACAACATTGAAAAGCCTCAAGGATCCCAA
TTTTCTACTGGACAACACTAGCATGAGATCTCAGAGTCCCAACAACAGCT
TTTACCAGTTGGACTGCGGAAACTCCAGCATTTATGCTCGTCCCAAGCCA
CCGCCATATAAGGGCGGTACTTTGGGTCGAAATGGAGTGGACATTTGAAG
CTTTCTAGACCAT

BS13453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-RC 1362 CG7851-PC 1..1332 17..1348 6660 100 Plus
Scgalpha-RA 1332 CG7851-PA 1..1332 17..1348 6660 100 Plus
Scgalpha-RB 1221 CG7851-PB 1..965 17..981 4825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-RC 1657 CG7851-RC 113..1444 17..1348 6660 100 Plus
Scgalpha-RA 1657 CG7851-RA 113..1444 17..1348 6660 100 Plus
Scgalpha-RB 1546 CG7851-RB 113..1077 17..981 4825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8303541..8304100 17..576 2800 100 Plus
2L 23513712 2L 8304172..8304577 576..981 2030 100 Plus
2L 23513712 2L 8304842..8304987 1091..1236 730 100 Plus
2L 23513712 2L 8305050..8305163 1235..1348 570 100 Plus
2L 23513712 2L 8304662..8304772 982..1092 555 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:37:50 has no hits.

BS13453.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:49 Download gff for BS13453.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 109..1439 17..1347 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:11 Download gff for BS13453.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 113..1443 17..1347 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:09 Download gff for BS13453.complete
Subject Subject Range Query Range Percent Splice Strand
Scgalpha-RA 113..1443 17..1347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:09 Download gff for BS13453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8305052..8305162 1237..1347 100   Plus
2L 8303541..8304100 17..576 100 -> Plus
2L 8304173..8304577 577..981 100 -> Plus
2L 8304662..8304772 982..1092 100 -> Plus
2L 8304844..8304987 1093..1236 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:11 Download gff for BS13453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8303541..8304100 17..576 100 -> Plus
arm_2L 8304173..8304577 577..981 100 -> Plus
arm_2L 8304662..8304772 982..1092 100 -> Plus
arm_2L 8304844..8304987 1093..1236 100 -> Plus
arm_2L 8305052..8305162 1237..1347 100   Plus

BS13453.pep Sequence

Translation from 16 to 1347

> BS13453.pep
MKFLNLIVVVLALICNEVQGLKLQANVGELFTYKIEPQLFNWTHQVISQQ
FRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPPASSAGKDLSLDVVAL
NRQNYETRRVVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLRNI
FRNDLWPNSKEDLSVVFMESAVNMGGRLPLRPQQREGVIVHVGSFAQFSP
RLQELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPT
EILFHSGKQNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIP
GMIFAILIGMLSAVLCFQHEKFYDPHSEFFFANIFHICEESCAPQSASSD
SGADDGSESSSNSDYPMASTVQMVQCSDSKSNQPITTLKSLKDPNFLLDN
TSMRSQSPNNSFYQLDCGNSSIYARPKPPPYKGGTLGRNGVDI*

BS13453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Scgalpha-PC 453 CG7851-PC 1..443 1..443 2356 100 Plus
Scgalpha-PA 443 CG7851-PA 1..443 1..443 2356 100 Plus
Scgalpha-PB 406 CG7851-PB 1..406 1..443 2106 91.6 Plus