Clone Sequence Records
BS13453.5prime Sequence
608 bp (574 high quality bases) assembled on 2006-10-13
> BS13453.5prime
GAAGTTATCAGTCGACATGAAGTTTTTAAACTTAATAGTGGTCGTATTAG
CTTTAATCTGCAACGAAGTTCAGGGTCTAAAGTTGCAGGCAAATGTTGGA
GAACTCTTCACCTACAAAATCGAACCGCAACTCTTTAACTGGACACACCA
GGTGATCAGCCAGCAATTTCGCTACAGACCCTCGCTGAAGAATTATCCCG
ATTTGCCCAGTTGGATGCGATATATGTATAGCCATGAATACCATGCCGGC
TTCCTCTACGGAACTCCTCCAGCATCGTCGGCTGGCAAGGATCTAAGTCT
GGATGTGGTCGCCCTTAATCGCCAGAATTACGAAACGCGACGCGTTGTGG
TCACAATGTTTGTCGCCCACAAGTTTCCCACACCCAATGTCGTGCAGATG
AAAATAAACAATCTGAATTGGGTGCACCTAATGGATCCCGGCAGAAGGGA
GAACCTACGAAATATATTCCGCAACGATCTTTGGCCAAATAGCAAGGAGG
ACTTGAGTGTGGTCTTCATGGAGTCAGCTGTGAATATGGGCGGACGACTT
CCACTGCGACCGCAGCAGCGCGAGGGAGTCATTGTCCACGTGGGCAGTTT
TGCCCGTT
BS13453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7851-PA | 1332 | Scgalpha-RA | 1..589 | 17..605 | 2920 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scgalpha-RC | 1657 | CG7851-RC | 113..701 | 17..605 | 2930 | 99.8 | Plus |
Scgalpha-RB | 1546 | CG7851-RB | 113..701 | 17..605 | 2930 | 99.8 | Plus |
Scgalpha-RA | 1657 | CG7851-RA | 113..701 | 17..605 | 2930 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8303541..8304100 | 17..576 | 2800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:51:09 has no hits.
BS13453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:59 Download gff for
BS13453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7851-PA | 1..593 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:46 Download gff for
BS13453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 113..705 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:34 Download gff for
BS13453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 113..705 | 17..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:34 Download gff for
BS13453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8303541..8304100 | 17..576 | 100 | -> | Plus |
2L | 8304173..8304205 | 577..608 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:46 Download gff for
BS13453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8303541..8304100 | 17..576 | 100 | -> | Plus |
arm_2L | 8304173..8304205 | 577..608 | 93 | | Plus |
BS13453.3prime Sequence
622 bp (583 high quality bases) assembled on 2006-10-13
> BS13453.3prime
ATGGTCTAGAAAGCTTCAAATGTCCACTCCATTTCGACCCAAAGTACCGC
CCTTATATGGCGGTGGCTTGGGACGAGCATAAATGCTGGAGTTTCCGCAG
TCCAACTGGTAAAAGCTGTTGTTGGGACTCTGAGATCTCATGCTAGTGTT
GTCCAGTAGAAAATTGGGATCCTTGAGGCTTTTCAATGTTGTTATGGGCT
GATTGGATTTGCTATCCGAACACTGAACCATCTGCACAGTGGATGCCATG
GGATAATCCGAATTGGAAGAGCTCTCAGAACCATCATCCGCACCAGAATC
GCTTGACGCGCTTTGCGGCGCACAGGACTCTTCGCAGATGTGGAAAATGT
TGGCAAAGAAAAACTCAGAATGCGGATCGTAAAACTTCTCGTGCTGGAAA
CACAAAACAGCTGATAGCATTCCGATTAAAATGGCAAAAATCATGCCCGG
AATGGCAAAGGCAAAGGCGAATTCATCGATGTAATTGCGTTCGGGCACAT
CCTCCCTGGCGATTCCCATCCAGCGATCCTCTTGCCTCTGATTCAGATCA
TCGGGCATCTGCTGCTCGTTCTGCTTGCCACTGTGGAAAAGGATTTCCGT
TGGTGATTCCATGCCCACCATT
BS13453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7851-PA | 1332 | Scgalpha-RA | 726..1332 | 622..16 | 3010 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scgalpha-RC | 1657 | CG7851-RC | 838..1444 | 622..16 | 3020 | 99.8 | Minus |
Scgalpha-RA | 1657 | CG7851-RA | 838..1444 | 622..16 | 3020 | 99.8 | Minus |
Scgalpha-RB | 1546 | CG7851-RB | 1078..1333 | 271..16 | 1280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8304338..8304577 | 622..383 | 1185 | 99.6 | Minus |
2L | 23513712 | 2L | 8304842..8304987 | 273..128 | 730 | 100 | Minus |
2L | 23513712 | 2L | 8305050..8305163 | 129..16 | 570 | 100 | Minus |
2L | 23513712 | 2L | 8304662..8304772 | 382..272 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:14:26 has no hits.
BS13453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:40:59 Download gff for
BS13453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7851-PA | 726..1332 | 16..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:59 Download gff for
BS13453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 838..1444 | 16..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:21:12 Download gff for
BS13453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 838..1444 | 16..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:21:12 Download gff for
BS13453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8304338..8304577 | 383..622 | 99 | -> | Minus |
2L | 8304662..8304772 | 272..382 | 100 | -> | Minus |
2L | 8304844..8304987 | 128..271 | 100 | -> | Minus |
2L | 8305052..8305163 | 16..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:59 Download gff for
BS13453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8304338..8304577 | 383..622 | 99 | -> | Minus |
arm_2L | 8304662..8304772 | 272..382 | 100 | -> | Minus |
arm_2L | 8304844..8304987 | 128..271 | 100 | -> | Minus |
arm_2L | 8305052..8305163 | 16..127 | 100 | | Minus |
BS13453.complete Sequence
1363 bp assembled on 2009-08-24
GenBank Submission: KX804628
> BS13453.complete
GAAGTTATCAGTCGACATGAAGTTTTTAAACTTAATAGTGGTCGTATTAG
CTTTAATCTGCAACGAAGTTCAGGGTCTAAAGTTGCAGGCAAATGTTGGA
GAACTCTTCACCTACAAAATCGAACCGCAACTCTTTAACTGGACACACCA
GGTGATCAGCCAGCAATTTCGCTACAGACCCTCGCTGAAGAATTATCCCG
ATTTGCCCAGTTGGATGCGATATATGTATAGCCATGAATACCATGCCGGC
TTCCTCTACGGAACTCCTCCAGCATCGTCGGCTGGCAAGGATCTAAGTCT
GGATGTGGTCGCCCTTAATCGCCAGAATTACGAAACGCGACGCGTTGTGG
TCACAATGTTTGTCGCCCACAAGTTTCCCACACCCAATGTCGTGCAGATG
AAAATAAACAATCTGAATTGGGTGCACCTAATGGATCCCGGCAGAAGGGA
GAACCTACGAAATATATTCCGCAACGATCTTTGGCCAAATAGCAAGGAGG
ACTTGAGTGTGGTCTTCATGGAGTCAGCTGTGAATATGGGCGGACGACTT
CCACTGCGACCGCAGCAGCGCGAGGGAGTCATTGTCCACGTGGGCAGCTT
TGCCCAGTTCTCACCGCGGCTGCAGGAACTCCAGGAGGAAGTGAGACCAC
TGTACAAGTTGCCATCTTGCACCTACAAACGCACATCCGTGCAGAAAATC
TTTGAGAATGTTGGCTTCAAACTGGACTGGTGCGCCTTTCGAATGGTGGG
CATGGAATCACCAACGGAAATCCTCTTCCACAGTGGCAAGCAGAACGAGC
AGCAGATGCCCGATGATCTGAATCAGAGGCAAGAGGATCGCTGGATGGGA
ATCGCCAGGGAGGATGTGCCCGAACGCAATTACATCGATGAATTCGCCTT
TGCCTTTGCCATTCCGGGCATGATTTTTGCCATTTTAATCGGAATGCTAT
CAGCTGTTTTGTGTTTCCAGCACGAGAAGTTTTACGATCCGCATTCTGAG
TTTTTCTTTGCCAACATTTTCCACATCTGCGAAGAGTCCTGTGCGCCGCA
AAGCGCGTCAAGCGATTCTGGTGCGGATGATGGTTCTGAGAGCTCTTCCA
ATTCGGATTATCCCATGGCATCCACTGTGCAGATGGTTCAGTGTTCGGAT
AGCAAATCCAATCAGCCCATAACAACATTGAAAAGCCTCAAGGATCCCAA
TTTTCTACTGGACAACACTAGCATGAGATCTCAGAGTCCCAACAACAGCT
TTTACCAGTTGGACTGCGGAAACTCCAGCATTTATGCTCGTCCCAAGCCA
CCGCCATATAAGGGCGGTACTTTGGGTCGAAATGGAGTGGACATTTGAAG
CTTTCTAGACCAT
BS13453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scgalpha-RC | 1362 | CG7851-PC | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Scgalpha-RA | 1332 | CG7851-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Scgalpha-RB | 1221 | CG7851-PB | 1..965 | 17..981 | 4825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scgalpha-RC | 1657 | CG7851-RC | 113..1444 | 17..1348 | 6660 | 100 | Plus |
Scgalpha-RA | 1657 | CG7851-RA | 113..1444 | 17..1348 | 6660 | 100 | Plus |
Scgalpha-RB | 1546 | CG7851-RB | 113..1077 | 17..981 | 4825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8303541..8304100 | 17..576 | 2800 | 100 | Plus |
2L | 23513712 | 2L | 8304172..8304577 | 576..981 | 2030 | 100 | Plus |
2L | 23513712 | 2L | 8304842..8304987 | 1091..1236 | 730 | 100 | Plus |
2L | 23513712 | 2L | 8305050..8305163 | 1235..1348 | 570 | 100 | Plus |
2L | 23513712 | 2L | 8304662..8304772 | 982..1092 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:37:50 has no hits.
BS13453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:49 Download gff for
BS13453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 109..1439 | 17..1347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:11 Download gff for
BS13453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 113..1443 | 17..1347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:09 Download gff for
BS13453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scgalpha-RA | 113..1443 | 17..1347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:09 Download gff for
BS13453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8305052..8305162 | 1237..1347 | 100 | | Plus |
2L | 8303541..8304100 | 17..576 | 100 | -> | Plus |
2L | 8304173..8304577 | 577..981 | 100 | -> | Plus |
2L | 8304662..8304772 | 982..1092 | 100 | -> | Plus |
2L | 8304844..8304987 | 1093..1236 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:11 Download gff for
BS13453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8303541..8304100 | 17..576 | 100 | -> | Plus |
arm_2L | 8304173..8304577 | 577..981 | 100 | -> | Plus |
arm_2L | 8304662..8304772 | 982..1092 | 100 | -> | Plus |
arm_2L | 8304844..8304987 | 1093..1236 | 100 | -> | Plus |
arm_2L | 8305052..8305162 | 1237..1347 | 100 | | Plus |
BS13453.pep Sequence
Translation from 16 to 1347
> BS13453.pep
MKFLNLIVVVLALICNEVQGLKLQANVGELFTYKIEPQLFNWTHQVISQQ
FRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPPASSAGKDLSLDVVAL
NRQNYETRRVVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLRNI
FRNDLWPNSKEDLSVVFMESAVNMGGRLPLRPQQREGVIVHVGSFAQFSP
RLQELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPT
EILFHSGKQNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIP
GMIFAILIGMLSAVLCFQHEKFYDPHSEFFFANIFHICEESCAPQSASSD
SGADDGSESSSNSDYPMASTVQMVQCSDSKSNQPITTLKSLKDPNFLLDN
TSMRSQSPNNSFYQLDCGNSSIYARPKPPPYKGGTLGRNGVDI*
BS13453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scgalpha-PC | 453 | CG7851-PC | 1..443 | 1..443 | 2356 | 100 | Plus |
Scgalpha-PA | 443 | CG7851-PA | 1..443 | 1..443 | 2356 | 100 | Plus |
Scgalpha-PB | 406 | CG7851-PB | 1..406 | 1..443 | 2106 | 91.6 | Plus |