Clone BS13454 Report

Search the DGRC for BS13454

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS31-RA
Protein status:BS13454.pep: full length peptide match
Sequenced Size:1163

Clone Sequence Records

BS13454.5prime Sequence

588 bp (490 high quality bases) assembled on 2006-10-13

> BS13454.5prime
GAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTCCCAGAGATTGGGCC
TACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGGGATTGGTCAACTAC
TCCTCTTCGCAGTCCAAAAACGACGATGGATACTCCTCTTCGGACGACGA
AAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAACGGCGGCCCAGCGGC
TGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCGGCATCG
GACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAA
ACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTA
GCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTA
TTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCTTCAGCAGCGACCGG
AGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTCTGGTGATAAGGAAC
TCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGTCAGCAG
CCGCACCAGGTGGAGCAAACCCGCGGCGAGTACGTTCG

BS13454.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5904-PA 1131 mRpS31-RA 1..572 17..588 2810 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1277 CG5904-RA 98..669 17..588 2830 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16005391..16005847 54..510 2285 100 Plus
3L 28110227 3L 16005912..16005991 509..588 370 97.5 Plus
3L 28110227 3L 16005290..16005327 17..54 190 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:53:39 has no hits.

BS13454.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:00 Download gff for BS13454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5904-PA 1..572 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:38:04 Download gff for BS13454.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 98..669 17..588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:25 Download gff for BS13454.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 98..669 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:25 Download gff for BS13454.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16005290..16005327 17..54 100 -> Plus
3L 16005392..16005847 55..510 100 -> Plus
3L 16005914..16005991 511..588 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:38:04 Download gff for BS13454.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15998390..15998427 17..54 100 -> Plus
arm_3L 15998492..15998947 55..510 100 -> Plus
arm_3L 15999014..15999091 511..588 97   Plus

BS13454.complete Sequence

1163 bp assembled on 2012-04-25

GenBank Submission: KX803620

> BS13454.complete
GAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTCCCAGAGATTGGGCC
TACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGGGATTGGTCAACTAC
TCCTCTTCGCAGTCCAAAAACGACGATGGATACTCCTCTTCGGACGACGA
AAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAACGGCGGCCCAGCGGC
TGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCGGCATCG
GACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAA
ACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTA
GCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTA
TTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCTTCAGCAGCGACCGG
AGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTCTGGTGATAAGGAAC
TCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGTCAGCAG
CCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGC
TTCCAGATTCAAGCCACAGAATCGAGATGGGGCTTATCAGCGGTCACAGA
GGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCAGTGTCAATTTGTAC
GGCGGGGAACCGTTGGGTATCTTCAAGGATACCCAGCTGCCGATTTCCAA
CGACATCCTTTCAACCTGGTCACAGCTGAGTGAGCGGGAGCTTAGTTTAC
AAGCTTCCCATCCCCCGGCAAACTACTTCGAGCAAATGGTCCTGTGGACG
GATCAAAAGAAGGTGTGGCGCTTTCCCATCAACAATGAGCAGGATTGGGA
GGACGAGCATAACGTGGACTTCTCGGAACACATTTTTCTGGAACAACATC
TCGAGGATTGGTGTCCTAGCAAGGGGCCTATTCGCCATTTCATGGAGCTC
GTCTGCGTCGGCTTGTCCAAGAATCCCTACTTGACTGCCCAGGAGAAGAA
GGATCACATTTTCTGGTTCCGTGACTATTTCCAGGCCAAGAAGGACATTC
TGAGGGATCTGATTAGCAAGGAGCCAAGCAAAAGTATTTCTGCTTAAAAG
CTTTCTAGACCAT

BS13454.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1131 CG5904-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1277 CG5904-RA 98..1228 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16005912..16006550 509..1147 3195 100 Plus
3L 28110227 3L 16005391..16005847 54..510 2285 100 Plus
3L 28110227 3L 16005290..16005327 17..54 190 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:15:34 has no hits.

BS13454.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:19 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 94..1229 17..1154 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:44 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 99..1222 22..1145 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:46 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 103..1226 22..1145 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:47 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 99..1222 22..1145 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:40 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 103..1226 22..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:40 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16005295..16005327 22..54 100 -> Plus
3L 16005392..16005847 55..510 100 -> Plus
3L 16005914..16006548 511..1145 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:46 Download gff for BS13454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15998395..15998427 22..54 100 -> Plus
arm_3L 15998492..15998947 55..510 100 -> Plus
arm_3L 15999014..15999648 511..1145 100   Plus

BS13454.pep Sequence

Translation from 16 to 1146

> BS13454.pep
MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK
KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA
KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA
DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP
QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST
WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV
DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW
FRDYFQAKKDILRDLISKEPSKSISA*

BS13454.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-PA 376 CG5904-PA 1..376 1..376 1937 100 Plus