Clone BS13456 Report

Search the DGRC for BS13456

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG9691-RA
Protein status:BS13456.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13456.3prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS13456.3prime
ATGGTCTAGAAAGCTTTCATGGGATCGGGGTGCTGGGTCCTCCGATGGGG
GCTAAAAGGACCTTCTCGGTGGGGGCGTCATAGGCCACTGGAATTTTGGG
CGTGGTCGATGGCTCATCGGTCAGCTTGTGCTTCAGTTCGTCGTACTTCT
GGGCCACCGAGCTGCCAAACTCCTTGGCGCCCTCGCCGATCTTGTCGGTG
TAGGGCTTGGCGGCCTCGGCCACCTCCTTGGCCCCCTGGTTGACCTTGCA
GCCTAGGTTCTTGAAGAAGTGCTTGAATTCGCTGTCCTCGGGACTCTTGG
CCTCGTCGCACTCGGCACGAACTTGGCCAGCGGCCATAAGCAGGACCAAT
CCGATCAAAGAGCACACAACGAGCGATTTCATGTCGACTGATAACT

BS13456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-PB 366 CG9691-RB 1..366 382..17 1830 100 Minus
CG9691-PA 366 CG9691-RA 1..366 382..17 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-RA 534 CG9691-RA 61..426 382..17 1830 100 Minus
CG9691-RB 603 CG9691-RB 61..426 382..17 1830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9884502..9884867 382..17 1830 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:12:49 has no hits.

BS13456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:00 Download gff for BS13456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9691-PA 1..366 17..382 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:08 Download gff for BS13456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 55..426 17..388 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:34 Download gff for BS13456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 55..426 17..388 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:34 Download gff for BS13456.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9884496..9884867 17..388 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:08 Download gff for BS13456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9778529..9778900 17..388 99   Minus

BS13456.5prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS13456.5prime
GAAGTTATCAGTCGACATGAAATCGCTCGTTGTGTGCTCTTTGATCGGAT
TGGTCCTGCTTATGGCCGCTGGCCAAGTTCGTGCCGAGTGCGACGAGGCC
AAGAGTCCCGAGGACAGCGAATTCAAGCACTTCTTCAAGAACCTAGGCTG
CAAGGTCAACCAGGGGGCCAAGGAGGTGGCCGAGGCCGCCAAGCCCTACA
CCGACAAGATCGGCGAGGGCGCCAAGGAGTTTGGCAGCTCGGTGGCCCAG
AAGTACGACGAACTGAAGCACAAGCTGACCGATGAGCCATCGACCACGCC
CAAAATTCCAGTGGCCTATGACGCCCCCACCGAGAAGGTCCTTTTAGCCC
CCATCGGAGGACCCAGCACCCCGATCCCATGAAAGCTTTCTAGACC

BS13456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-PB 366 CG9691-RB 1..366 17..382 1830 100 Plus
CG9691-PA 366 CG9691-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-RA 534 CG9691-RA 61..426 17..382 1830 100 Plus
CG9691-RB 603 CG9691-RB 61..426 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9884502..9884867 17..382 1830 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:16:15 has no hits.

BS13456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:00 Download gff for BS13456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9691-PA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:01 Download gff for BS13456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 55..426 11..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:01 Download gff for BS13456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 55..426 11..382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:01 Download gff for BS13456.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9884496..9884867 11..382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:01 Download gff for BS13456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9778529..9778900 11..382 99   Plus

BS13456.complete Sequence

398 bp assembled on 2006-11-01

GenBank Submission: FJ637459

> BS13456.complete
GAAGTTATCAGTCGACATGAAATCGCTCGTTGTGTGCTCTTTGATCGGAT
TGGTCCTGCTTATGGCCGCTGGCCAAGTTCGTGCCGAGTGCGACGAGGCC
AAGAGTCCCGAGGACAGCGAATTCAAGCACTTCTTCAAGAACCTAGGCTG
CAAGGTCAACCAGGGGGCCAAGGAGGTGGCCGAGGCCGCCAAGCCCTACA
CCGACAAGATCGGCGAGGGCGCCAAGGAGTTTGGCAGCTCGGTGGCCCAG
AAGTACGACGAACTGAAGCACAAGCTGACCGATGAGCCATCGACCACGCC
CAAAATTCCAGTGGCCTATGACGCCCCCACCGAGAAGGTCCTTTTAGCCC
CCATCGGAGGACCCAGCACCCCGATCCCATGAAAGCTTTCTAGACCAT

BS13456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-RA 366 CG9691-PA 1..366 17..382 1830 100 Plus
CG9691-RB 366 CG9691-PB 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-RA 534 CG9691-RA 61..426 17..382 1830 100 Plus
CG9691-RB 603 CG9691-RB 61..426 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9884502..9884867 17..382 1830 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:17:03 has no hits.

BS13456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:17 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
CG9691-RA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:02 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 55..426 11..382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:49 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 61..425 17..381 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:17 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 55..426 11..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:42 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
CG9691-RB 61..425 17..381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:42 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
X 9884502..9884866 17..381 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:49 Download gff for BS13456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9778535..9778899 17..381 100   Plus

BS13456.pep Sequence

Translation from 16 to 381

> BS13456.pep
MKSLVVCSLIGLVLLMAAGQVRAECDEAKSPEDSEFKHFFKNLGCKVNQG
AKEVAEAAKPYTDKIGEGAKEFGSSVAQKYDELKHKLTDEPSTTPKIPVA
YDAPTEKVLLAPIGGPSTPIP*

BS13456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9691-PA 121 CG9691-PA 1..121 1..121 625 100 Plus
CG9691-PB 121 CG9691-PB 1..121 1..121 625 100 Plus