Clone Sequence Records
BS13456.3prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS13456.3prime
ATGGTCTAGAAAGCTTTCATGGGATCGGGGTGCTGGGTCCTCCGATGGGG
GCTAAAAGGACCTTCTCGGTGGGGGCGTCATAGGCCACTGGAATTTTGGG
CGTGGTCGATGGCTCATCGGTCAGCTTGTGCTTCAGTTCGTCGTACTTCT
GGGCCACCGAGCTGCCAAACTCCTTGGCGCCCTCGCCGATCTTGTCGGTG
TAGGGCTTGGCGGCCTCGGCCACCTCCTTGGCCCCCTGGTTGACCTTGCA
GCCTAGGTTCTTGAAGAAGTGCTTGAATTCGCTGTCCTCGGGACTCTTGG
CCTCGTCGCACTCGGCACGAACTTGGCCAGCGGCCATAAGCAGGACCAAT
CCGATCAAAGAGCACACAACGAGCGATTTCATGTCGACTGATAACT
BS13456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-PB | 366 | CG9691-RB | 1..366 | 382..17 | 1830 | 100 | Minus |
CG9691-PA | 366 | CG9691-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-RA | 534 | CG9691-RA | 61..426 | 382..17 | 1830 | 100 | Minus |
CG9691-RB | 603 | CG9691-RB | 61..426 | 382..17 | 1830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9884502..9884867 | 382..17 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:12:49 has no hits.
BS13456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:00 Download gff for
BS13456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:08 Download gff for
BS13456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 55..426 | 17..388 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:34 Download gff for
BS13456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 55..426 | 17..388 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:34 Download gff for
BS13456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9884496..9884867 | 17..388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:08 Download gff for
BS13456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9778529..9778900 | 17..388 | 99 | | Minus |
BS13456.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS13456.5prime
GAAGTTATCAGTCGACATGAAATCGCTCGTTGTGTGCTCTTTGATCGGAT
TGGTCCTGCTTATGGCCGCTGGCCAAGTTCGTGCCGAGTGCGACGAGGCC
AAGAGTCCCGAGGACAGCGAATTCAAGCACTTCTTCAAGAACCTAGGCTG
CAAGGTCAACCAGGGGGCCAAGGAGGTGGCCGAGGCCGCCAAGCCCTACA
CCGACAAGATCGGCGAGGGCGCCAAGGAGTTTGGCAGCTCGGTGGCCCAG
AAGTACGACGAACTGAAGCACAAGCTGACCGATGAGCCATCGACCACGCC
CAAAATTCCAGTGGCCTATGACGCCCCCACCGAGAAGGTCCTTTTAGCCC
CCATCGGAGGACCCAGCACCCCGATCCCATGAAAGCTTTCTAGACC
BS13456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-PB | 366 | CG9691-RB | 1..366 | 17..382 | 1830 | 100 | Plus |
CG9691-PA | 366 | CG9691-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-RA | 534 | CG9691-RA | 61..426 | 17..382 | 1830 | 100 | Plus |
CG9691-RB | 603 | CG9691-RB | 61..426 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9884502..9884867 | 17..382 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:15 has no hits.
BS13456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:00 Download gff for
BS13456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:01 Download gff for
BS13456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 55..426 | 11..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:01 Download gff for
BS13456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 55..426 | 11..382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:01 Download gff for
BS13456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9884496..9884867 | 11..382 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:01 Download gff for
BS13456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9778529..9778900 | 11..382 | 99 | | Plus |
BS13456.complete Sequence
398 bp assembled on 2006-11-01
GenBank Submission: FJ637459
> BS13456.complete
GAAGTTATCAGTCGACATGAAATCGCTCGTTGTGTGCTCTTTGATCGGAT
TGGTCCTGCTTATGGCCGCTGGCCAAGTTCGTGCCGAGTGCGACGAGGCC
AAGAGTCCCGAGGACAGCGAATTCAAGCACTTCTTCAAGAACCTAGGCTG
CAAGGTCAACCAGGGGGCCAAGGAGGTGGCCGAGGCCGCCAAGCCCTACA
CCGACAAGATCGGCGAGGGCGCCAAGGAGTTTGGCAGCTCGGTGGCCCAG
AAGTACGACGAACTGAAGCACAAGCTGACCGATGAGCCATCGACCACGCC
CAAAATTCCAGTGGCCTATGACGCCCCCACCGAGAAGGTCCTTTTAGCCC
CCATCGGAGGACCCAGCACCCCGATCCCATGAAAGCTTTCTAGACCAT
BS13456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-RA | 366 | CG9691-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
CG9691-RB | 366 | CG9691-PB | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-RA | 534 | CG9691-RA | 61..426 | 17..382 | 1830 | 100 | Plus |
CG9691-RB | 603 | CG9691-RB | 61..426 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9884502..9884867 | 17..382 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:17:03 has no hits.
BS13456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:17 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:02 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 55..426 | 11..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:49 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 61..425 | 17..381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:17 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 55..426 | 11..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:42 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9691-RB | 61..425 | 17..381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:42 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9884502..9884866 | 17..381 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:49 Download gff for
BS13456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9778535..9778899 | 17..381 | 100 | | Plus |
BS13456.pep Sequence
Translation from 16 to 381
> BS13456.pep
MKSLVVCSLIGLVLLMAAGQVRAECDEAKSPEDSEFKHFFKNLGCKVNQG
AKEVAEAAKPYTDKIGEGAKEFGSSVAQKYDELKHKLTDEPSTTPKIPVA
YDAPTEKVLLAPIGGPSTPIP*
BS13456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9691-PA | 121 | CG9691-PA | 1..121 | 1..121 | 625 | 100 | Plus |
CG9691-PB | 121 | CG9691-PB | 1..121 | 1..121 | 625 | 100 | Plus |