Clone BS13457 Report

Search the DGRC for BS13457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG4267-RA
Protein status:BS13457.pep: full length peptide match
Sequenced Size:1157

Clone Sequence Records

BS13457.complete Sequence

1157 bp assembled on 2009-12-07

GenBank Submission: KX803584

> BS13457.complete
GAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCATCATGA
GTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGCTCGGAG
AAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGTGAAGAA
GAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCAAGCACC
TCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTCTTCAAG
CGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGTGGAAAA
CCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAGTCATTC
ATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTTAAGAAC
GCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGCCCCCTA
CGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCACGAACG
TAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCCCTGCTG
GCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTACGACGA
CGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCAGTGCTG
GCAAGCAGATAATGCCATATCGATTCAACACCATATACGCTCTGGATCCG
GCGGGTCCACAGTTCCGGGAGAAGAGCGACGAGTACCGAATCGATGCTAG
TGACGCCTCCTATGTGGAGTCCATTCAAACCAGCGTTAGCTTTGGCTTCG
AGCAGCCCGTGGGACACGCCACCTTCTATCCCAACTATGGGAAGAATCAG
AAGAAATGCTATGTCTATGGCTGTTCTCATAAGAGATCCCATGACTACTT
CATAGAGTCGCTGACGAGTCCGGCGGGATTTTGGGGACCGCGCTGCGAGC
GTCACGATGATGGCACCTGGCTGCTCCTAATGAGCGATGGAGAGTTCCGG
ATGGGCGGGGAGCCCTCAATCCCCAAGAACGGAACTTTCTATGTGAAAAC
CTACTCAAAGCCACCCTATGCCATGGGCCACAGGTGGCAAACGGAACCGC
CTCCACGGGAAGATGATATTGAGAACTCCACGGAAGAGTAGAAGCTTTCT
AGACCAT

BS13457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 1125 CG4267-PB 1..1125 17..1141 5625 100 Plus
CG4267-RA 1125 CG4267-PA 1..1125 17..1141 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 2182 CG4267-RB 144..1269 16..1141 5630 100 Plus
CG4267-RA 1322 CG4267-RA 144..1269 16..1141 5630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243558..2244361 338..1141 4020 100 Plus
2L 23513712 2L 2242692..2242946 86..340 1275 100 Plus
2L 23513712 2L 2242521..2242591 16..86 355 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:07:41 has no hits.

BS13457.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:55 Download gff for BS13457.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 145..1269 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:37 Download gff for BS13457.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 145..1269 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:59 Download gff for BS13457.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 145..1269 17..1141 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:36 Download gff for BS13457.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 145..1269 17..1141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:36 Download gff for BS13457.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2242522..2242591 17..86 100 -> Plus
2L 2242693..2242945 87..339 100 -> Plus
2L 2243560..2244361 340..1141 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:37 Download gff for BS13457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2242522..2242591 17..86 100 -> Plus
arm_2L 2242693..2242945 87..339 100 -> Plus
arm_2L 2243560..2244361 340..1141 100   Plus

BS13457.5prime Sequence

728 bp (631 high quality bases) assembled on 2006-10-13

> BS13457.5prime
GAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCATCATGA
GTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGCTCGGAG
AAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGTGAAGAA
GAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCAAGCACC
TCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTCTTCAAG
CGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGTGGAAAA
CCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAGTCATTC
ATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTTAAGAAC
GCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGCCCCCTA
CGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCACGAACG
TAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCCCTGCTG
GCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTACGACGA
CGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCAGTGCTT
GGCAAGCAAATAATGCCATATCGATTCAACACCATATACGCTCTGGATCC
GGGCGGGTCCACAGTTCCGGGAGAAGAG

BS13457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PA 1125 CG4267-RA 1..710 17..728 3455 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 2182 CG4267-RB 144..854 16..728 3500 99.6 Plus
CG4267-RA 1322 CG4267-RA 144..854 16..728 3500 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243558..2243946 338..728 1840 99.2 Plus
2L 23513712 2L 2242692..2242946 86..340 1275 100 Plus
2L 23513712 2L 2242521..2242591 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:10:49 has no hits.

BS13457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:01 Download gff for BS13457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-PA 1..710 17..728 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:44 Download gff for BS13457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 140..854 9..728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:56 Download gff for BS13457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 140..854 9..728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:56 Download gff for BS13457.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2242517..2242591 9..86 96 -> Plus
2L 2242693..2242945 87..339 100 -> Plus
2L 2243560..2243946 340..728 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:44 Download gff for BS13457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2242517..2242591 9..86 96 -> Plus
arm_2L 2242693..2242945 87..339 100 -> Plus
arm_2L 2243560..2243946 340..728 99   Plus

BS13457.pep Sequence

Translation from 16 to 1140

> BS13457.pep
MISQLGRISIMSAVLLAFAAIVFASSSEKTELDPNATCNYTLVKKKTLGV
DPSFWKKFFKHLIPFTSSRGKMQFILFKRDFADCGRELFVGDVENLRNSG
FDARHQTRIVIHGWMSQSKGSHIRKVKNAYLSLTDPGPNGEPAPYEDFNV
IVCDWSKTSTNVNYYEVAKTVEDMGALLAELVRYLNQEANMHYDDVYVIG
HSLGAQIAGSAGKQIMPYRFNTIYALDPAGPQFREKSDEYRIDASDASYV
ESIQTSVSFGFEQPVGHATFYPNYGKNQKKCYVYGCSHKRSHDYFIESLT
SPAGFWGPRCERHDDGTWLLLMSDGEFRMGGEPSIPKNGTFYVKTYSKPP
YAMGHRWQTEPPPREDDIENSTEE*

BS13457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PB 374 CG4267-PB 1..374 1..374 2014 100 Plus
CG4267-PA 374 CG4267-PA 1..374 1..374 2014 100 Plus
CG6675-PC 386 CG6675-PC 77..384 37..354 821 51.7 Plus
CG6675-PB 390 CG6675-PB 81..388 37..354 821 51.7 Plus
sxe2-PB 387 CG4979-PB 90..360 91..351 414 33.2 Plus