Clone Sequence Records
BS13458.3prime Sequence
581 bp (555 high quality bases) assembled on 2006-10-13
> BS13458.3prime
ATGGTCTAGAAAGCTTTCAGAACCGAAAGGTCACTGCCAACTGGAGCGGG
GCCAGAAAGAGGCCCAGCAGCCAGAGGCTAATGTCCCGTCCGTGAGCCGC
CGAATCGTTGACGGAGGAAGCAGATGTGCCCGCCGGTGCCGGAAGCAGAG
ATGGAGCCGGGGTGCTTGGCTCCGGGCCAAAGCGAATGGTAGCCGTGTGT
CGCACTTTGTTCGGCAGTACCTCGCACTCGTAGCGCTCCTCGGTGGCATT
GGATGCCAGGGGAACGGTCAGGGAGAACTGCTCGTCCAGGGCATAGATGT
GGTTGAATATATTCATTCCGCTGGATACCTGTACCTTCTCCTTGTACCAG
AGAACGACGTGGTGTGCAGCATTATAATTTTTAACTGGGCACTCCAACTT
GGCGCTGGTCGCGTTCTGCGGCACATAGATATCCACATCGCTGTGCTCGA
AGTATGGCTCTGGAACTTTGGGATCAGCGGTCGACTTGGCCAGGTTTCCC
GGAGCCCGCTGCTGGTCCTCCTCGTAGTCGTAGTCCTTGCTGGTGTCTCC
TGCTGACGGGGCAGTGACGGCTCCCCCGGCT
BS13458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-PA | 690 | CG6044-RA | 126..690 | 581..17 | 2825 | 100 | Minus |
CG6044-PB | 300 | CG6044-RB | 1..300 | 316..17 | 1500 | 100 | Minus |
CG6044-PC | 300 | CG6044-RC | 1..300 | 316..17 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 1652 | CG6044-RG | 355..920 | 581..16 | 2830 | 100 | Minus |
CG6044-RA | 1484 | CG6044-RA | 355..920 | 581..16 | 2830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22407454..22407808 | 370..16 | 1775 | 100 | Minus |
2R | 25286936 | 2R | 22407114..22407325 | 581..370 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:32:53 has no hits.
BS13458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:01 Download gff for
BS13458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-PA | 126..690 | 17..581 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:46 Download gff for
BS13458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 355..922 | 13..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:21 Download gff for
BS13458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 355..922 | 13..581 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:21 Download gff for
BS13458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22407114..22407325 | 370..581 | 100 | -> | Minus |
2R | 22407455..22407810 | 13..369 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:46 Download gff for
BS13458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18294619..18294830 | 370..581 | 100 | -> | Minus |
arm_2R | 18294960..18295315 | 13..369 | 99 | | Minus |
BS13458.5prime Sequence
630 bp (548 high quality bases) assembled on 2006-10-13
> BS13458.5prime
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCA
BS13458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-PA | 690 | CG6044-RA | 1..614 | 17..630 | 3070 | 100 | Plus |
CG6044-PB | 300 | CG6044-RB | 1..224 | 407..630 | 1120 | 100 | Plus |
CG6044-PC | 300 | CG6044-RC | 1..224 | 407..630 | 1120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 1652 | CG6044-RG | 230..843 | 17..630 | 3070 | 100 | Plus |
CG6044-RA | 1484 | CG6044-RA | 230..843 | 17..630 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22407040..22407325 | 68..353 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 22407454..22407731 | 353..630 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 22404406..22404462 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:10:23 has no hits.
BS13458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:01 Download gff for
BS13458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-PA | 1..613 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:27 Download gff for
BS13458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 227..842 | 14..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:23 Download gff for
BS13458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 227..842 | 14..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:23 Download gff for
BS13458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22404403..22404460 | 14..71 | 98 | -> | Plus |
2R | 22407044..22407325 | 72..353 | 100 | -> | Plus |
2R | 22407455..22407730 | 354..629 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:27 Download gff for
BS13458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18291908..18291965 | 14..71 | 98 | -> | Plus |
arm_2R | 18294549..18294830 | 72..353 | 100 | -> | Plus |
arm_2R | 18294960..18295235 | 354..629 | 100 | | Plus |
BS13458.complete Sequence
722 bp assembled on 2006-11-01
GenBank Submission: FJ637460
> BS13458.complete
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCT
GGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGG
TTCTGAAAGCTTTCTAGACCAT
BS13458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 690 | CG6044-PG | 1..690 | 17..706 | 3450 | 100 | Plus |
CG6044-RA | 690 | CG6044-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 1652 | CG6044-RG | 230..920 | 17..707 | 3455 | 100 | Plus |
CG6044-RA | 1484 | CG6044-RA | 230..920 | 17..707 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22407454..22407808 | 353..707 | 1775 | 100 | Plus |
2R | 25286936 | 2R | 22407040..22407325 | 68..353 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 22404406..22404462 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:10:50 has no hits.
BS13458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:47 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:10 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 231..926 | 14..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:19 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 230..918 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:48 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 231..926 | 14..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:40 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 230..918 | 17..705 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:40 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22404406..22404460 | 17..71 | 100 | -> | Plus |
2R | 22407044..22407325 | 72..353 | 100 | -> | Plus |
2R | 22407455..22407806 | 354..705 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:19 Download gff for
BS13458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18291911..18291965 | 17..71 | 100 | -> | Plus |
arm_2R | 18294549..18294830 | 72..353 | 100 | -> | Plus |
arm_2R | 18294960..18295311 | 354..705 | 100 | | Plus |
BS13458.pep Sequence
Translation from 16 to 705
> BS13458.pep
MRHLWLLLLIACGSVQFPGVLTLPEALPAKSSSAAGGGNGGGAGGAVTAP
SAGDTSKDYDYEEDQQRAPGNLAKSTADPKVPEPYFEHSDVDIYVPQNAT
SAKLECPVKNYNAAHHVVLWYKEKVQVSSGMNIFNHIYALDEQFSLTVPL
ASNATEERYECEVLPNKVRHTATIRFGPEPSTPAPSLLPAPAGTSASSVN
DSAAHGRDISLWLLGLFLAPLQLAVTFRF*
BS13458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-PG | 229 | CG6044-PG | 1..229 | 1..229 | 1201 | 100 | Plus |
CG6044-PA | 229 | CG6044-PA | 1..229 | 1..229 | 1201 | 100 | Plus |