Clone BS13458 Report

Search the DGRC for BS13458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG6044-RA
Protein status:BS13458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13458.3prime Sequence

581 bp (555 high quality bases) assembled on 2006-10-13

> BS13458.3prime
ATGGTCTAGAAAGCTTTCAGAACCGAAAGGTCACTGCCAACTGGAGCGGG
GCCAGAAAGAGGCCCAGCAGCCAGAGGCTAATGTCCCGTCCGTGAGCCGC
CGAATCGTTGACGGAGGAAGCAGATGTGCCCGCCGGTGCCGGAAGCAGAG
ATGGAGCCGGGGTGCTTGGCTCCGGGCCAAAGCGAATGGTAGCCGTGTGT
CGCACTTTGTTCGGCAGTACCTCGCACTCGTAGCGCTCCTCGGTGGCATT
GGATGCCAGGGGAACGGTCAGGGAGAACTGCTCGTCCAGGGCATAGATGT
GGTTGAATATATTCATTCCGCTGGATACCTGTACCTTCTCCTTGTACCAG
AGAACGACGTGGTGTGCAGCATTATAATTTTTAACTGGGCACTCCAACTT
GGCGCTGGTCGCGTTCTGCGGCACATAGATATCCACATCGCTGTGCTCGA
AGTATGGCTCTGGAACTTTGGGATCAGCGGTCGACTTGGCCAGGTTTCCC
GGAGCCCGCTGCTGGTCCTCCTCGTAGTCGTAGTCCTTGCTGGTGTCTCC
TGCTGACGGGGCAGTGACGGCTCCCCCGGCT

BS13458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PA 690 CG6044-RA 126..690 581..17 2825 100 Minus
CG6044-PB 300 CG6044-RB 1..300 316..17 1500 100 Minus
CG6044-PC 300 CG6044-RC 1..300 316..17 1500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 1652 CG6044-RG 355..920 581..16 2830 100 Minus
CG6044-RA 1484 CG6044-RA 355..920 581..16 2830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407454..22407808 370..16 1775 100 Minus
2R 25286936 2R 22407114..22407325 581..370 1060 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:32:53 has no hits.

BS13458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:01 Download gff for BS13458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-PA 126..690 17..581 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:46 Download gff for BS13458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 355..922 13..581 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:21 Download gff for BS13458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 355..922 13..581 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:21 Download gff for BS13458.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22407114..22407325 370..581 100 -> Minus
2R 22407455..22407810 13..369 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:46 Download gff for BS13458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18294619..18294830 370..581 100 -> Minus
arm_2R 18294960..18295315 13..369 99   Minus

BS13458.5prime Sequence

630 bp (548 high quality bases) assembled on 2006-10-13

> BS13458.5prime
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCA

BS13458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PA 690 CG6044-RA 1..614 17..630 3070 100 Plus
CG6044-PB 300 CG6044-RB 1..224 407..630 1120 100 Plus
CG6044-PC 300 CG6044-RC 1..224 407..630 1120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 1652 CG6044-RG 230..843 17..630 3070 100 Plus
CG6044-RA 1484 CG6044-RA 230..843 17..630 3070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407040..22407325 68..353 1430 100 Plus
2R 25286936 2R 22407454..22407731 353..630 1390 100 Plus
2R 25286936 2R 22404406..22404462 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:10:23 has no hits.

BS13458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:01 Download gff for BS13458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-PA 1..613 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:27 Download gff for BS13458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 227..842 14..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:23 Download gff for BS13458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 227..842 14..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:23 Download gff for BS13458.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22404403..22404460 14..71 98 -> Plus
2R 22407044..22407325 72..353 100 -> Plus
2R 22407455..22407730 354..629 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:27 Download gff for BS13458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18291908..18291965 14..71 98 -> Plus
arm_2R 18294549..18294830 72..353 100 -> Plus
arm_2R 18294960..18295235 354..629 100   Plus

BS13458.complete Sequence

722 bp assembled on 2006-11-01

GenBank Submission: FJ637460

> BS13458.complete
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCT
GGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGG
TTCTGAAAGCTTTCTAGACCAT

BS13458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 690 CG6044-PG 1..690 17..706 3450 100 Plus
CG6044-RA 690 CG6044-PA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 1652 CG6044-RG 230..920 17..707 3455 100 Plus
CG6044-RA 1484 CG6044-RA 230..920 17..707 3455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407454..22407808 353..707 1775 100 Plus
2R 25286936 2R 22407040..22407325 68..353 1430 100 Plus
2R 25286936 2R 22404406..22404462 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:10:50 has no hits.

BS13458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:47 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:10 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 231..926 14..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:19 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 230..918 17..705 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:48 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 231..926 14..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:40 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 230..918 17..705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:40 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22404406..22404460 17..71 100 -> Plus
2R 22407044..22407325 72..353 100 -> Plus
2R 22407455..22407806 354..705 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:19 Download gff for BS13458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18291911..18291965 17..71 100 -> Plus
arm_2R 18294549..18294830 72..353 100 -> Plus
arm_2R 18294960..18295311 354..705 100   Plus

BS13458.pep Sequence

Translation from 16 to 705

> BS13458.pep
MRHLWLLLLIACGSVQFPGVLTLPEALPAKSSSAAGGGNGGGAGGAVTAP
SAGDTSKDYDYEEDQQRAPGNLAKSTADPKVPEPYFEHSDVDIYVPQNAT
SAKLECPVKNYNAAHHVVLWYKEKVQVSSGMNIFNHIYALDEQFSLTVPL
ASNATEERYECEVLPNKVRHTATIRFGPEPSTPAPSLLPAPAGTSASSVN
DSAAHGRDISLWLLGLFLAPLQLAVTFRF*

BS13458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PG 229 CG6044-PG 1..229 1..229 1201 100 Plus
CG6044-PA 229 CG6044-PA 1..229 1..229 1201 100 Plus