Clone Sequence Records
BS13461.complete Sequence
3091 bp assembled on 2009-12-07
GenBank Submission: KX803422
> BS13461.complete
GAAGTTATCAGTCGACATGCGGTCGCTTAACAAGTCGGCGGGCGAGGAGG
AGCTGACTGGCCTGAATGGCAACTCCAGCGACTCCATCTATACCATCAAG
AACAAGTGGATCACCGACTGGAGCCTTAGAAGGGAGCGGGATAAGCTGTG
CAGCTTCATTTTCAAGCGAGTCCTGACGCACACGGAGTGCAAACGTCTGT
TGGAGGCGGCCAAGATCTATGGCGAGAGCAGTGACTTCAATTCCTGGCCG
GTTAATGAACAGCTGCAATGGTACAGGAACTTCGATGTGAACAATACGAA
CCTTCTGTTGGCTGTTAGAAATCAATCCTCTGATGGCGGTTCCACCATGT
CGGGATCCAGTTCCGACTCGGAGATTCTTGGTCCTGTTTTGCCACCATTT
GCACTGTGGCAGACGATCCTGATAGCCATATGCCTGGCGATCTGTATCAT
TCTTACGGTGGGCGGTAATATCCTGGTGCTACTGGCCTTCATCGTGGACA
GGAATATTCGGCAGCCCAGCAACTACTTTATTGCCTCCCTAGCAGCCACG
GATATGCTAATAGGAACCGTTTCGATGCCCTTCTACACGATATACGTGCT
CAAGGGTTATTGGGACCTGGGTCCGATGCTCTGCGATCTCTGGCTTTCCG
TCGACTATACTGTGTGTCTGGTGTCCCAGTACACGGTGCTGTTGATCACG
ATAGATCGCTACTGCTCTGTGAAGATTGCCGCCAAGTACCGGAGTTGGAG
GACGAGAACCAGAGTGATATATATGGTCACAATCACTTGGATCATTCCCG
CTCTGCTCTTCTTCATCTCGATTTTTGGATGGGAGCACTTCACCGGCAAG
CGGGATCTACTTCCTGGCCAGTGCGCCGTTCAGTTTCTCAAGGATCCGAT
CTTTAATACGGCCCTAATCATTGGCTACTATTGGACCACACTAATTGTGC
TTTTTGTCTTATATGCCGGGATCTACAAAACAGCCTATGATATGCAAAAG
CGCAGTGAGGCGAAGCAACGGAAAATGCAATCCATGGTGGCACTGAGTGC
TGGAGCGATGTCCGGAATGGCAGGTCATGCAGCTGGCATTGGTGTGATTG
AGGAGAAAATCCTAAAGACCAAAGTGGAACTTGCGGGAGATCAAACCGAT
TTGGATAGTGCCTGCACCACAGTGATTAAGAGATTAAGTGGTTCCGGTCA
GGCAAATCCTCTGGCCGTGGCCACCGAGGAAGTGGAGAAGATGACACCGG
AACAGAGGAGAGCGTCGGCAGCAAAAATCCAGGAGGAGGCGAAAAAACGT
GAGGCAGCCGTGGATGCGGAAAAGAGCGAGAGATCCAGCAGTCCTGCCTT
CGATTCCGATGAGGAATCATCCGTCAACCAGGCCCAGCAGTTGATCACCC
AGCAGAAATTGAACAACATGAGGAAGCGGTCATCGATTGGTCTGGTCTTT
GGGGCACAGGCCGCCCTGCTGGCCACTCGTGGCAAAGGTAACTTGCAGAA
GAGCACCACTAACTCCAAGTCGATCGAGGCCATGCACCAGTACCACCACC
ACCAACAGCACCATCACAACCAGAGTCCGTTACAGCGGGCGCAGAGCAAG
GAAGAGATGCGCTCCCTGCACCACCACCAGAACCAGCAACAACCGCACCA
CCAGCACCACCAAAACCAGCCGAACCCACCGCTGGACAGGCCCAAGCGCA
CATCCTGCTCCACACTGTCCCAGATAGCCGAGCATGATCGTTTGGTCGAC
CTGTCCGCTCCTCCAACATTACTCAACACCAGTGATCCCCTGTCCCCCGT
GGACTTGGCACCCATCGAGGTCCCTAGCGATCAAGTGCATCAGGGTCTGG
TGCAGACCATTTTGCCACCTCCCGACGCCTTTCAGTGCCCCACCCCGCTC
TCCGATGACTACTCGGATCGTCCCTTTGGGAATAGTTCCGGTAACAGTGA
ACTGGCCCTGACCTATGACCTGATGACGAACTCGGAGCTACGCTATATGG
ACGAGAGCTCCGCCATGCTGGCCAGTGTGACGGCCAACTCGACGACCTCC
CCGAATGACAGCGTCCAGGGGAAACCACCAGTCCTGCCTCCACCACCGCC
CGCACGCCGAAATCCACCAAAATCGAACCTGAACCAGAGCCTCAGTCAAA
CTCCCAGCCAAAACCAGAGTCCCAGCCAAAGCCTGAGCCTCAACCTGAAT
CCGAATCACAACCAGAGTCAGAGTCAGAGTATCGAGGAGGCGGTGGCCAT
TGAAAAACGTCTTCTCGTCTCGTACACAGGAATCGAGGACTTTGCTAAGG
TGAGGCGGGAGAGCTGCATTGAGGCCATCTGCCTGTTGGATGTGCCCGGA
AAGCTAGCTGCGGACTGTCCCCATCGCCGGGCCTCCAGTCCTATGGAGAC
CAGCAGCAAGGATGCCATACTCTATTCCCCGATGCCACCAATGCCACTCT
CACCCAAGGTAAAGACTTCAACGCCACAAACGGGAACGCCCCAGTCGGCG
GCGGGTGTAACACCACCGGTGCCACTGGAAAGGATTGAGGAGCGAGAAAC
CTCGGACAGTAATACCAACAAGATGCCCTCCACCTCGGGCACCACCAGCA
GTACGGGCGGTGTGGGTGGAGGCGGGGAACAAGACGGTGTTGGTGCCACC
AAAAAGAACGCGGGGGATGACGATGCCAACAGGGAGGAGAAGAGTTTGGC
GGCCAGCCGAAACTCCAGCAAAAGGGCATTCATTCATTCGATAGGAAAGC
ACTTCAAGAGCAAGAAGGCTCTACCCCTGATCCTTGGAGTGGGTGGACGG
CAGAAGTCCAAGTCGGAGAATCGTGCTCGCAAAGCGTTTCGCACGATCTC
GTTCATTTTGGGCTGCTTCGTGGCCTGCTGGACACCCTACCATGTGTTGG
CCCTCGTCGAGGGATTCTGCCGGCATCCGCCCTGCATCAATGAACACCTC
TACATGTTCTCGTACTTCCTCTGCTACGCCAACAGCCCGATGAATCCTTT
TTGCTACGCTCTGGCCAATCAGCAGTTCAAGAAGACCTTTACGCGGATCC
TCAAGGGGGATCTGCACATGACCTAAAGCTTTCTAGACCAT
BS13461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mAChR-B-RA | 3060 | CG7918-PA | 1..3060 | 17..3076 | 15300 | 100 | Plus |
| mAChR-B-RB | 2268 | CG7918-PB | 1..1472 | 17..1488 | 7360 | 100 | Plus |
| mAChR-B-RB | 2268 | CG7918-PB | 1470..2268 | 2278..3076 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mAChR-B-RA | 4823 | CG7918-RA | 447..3506 | 17..3076 | 15300 | 100 | Plus |
| mAChR-B-RB | 4030 | CG7918-RB | 446..1917 | 17..1488 | 7360 | 100 | Plus |
| mAChR-B-RB | 4030 | CG7918-RB | 1915..2713 | 2278..3076 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8083218..8085732 | 562..3076 | 12575 | 100 | Plus |
| 3R | 32079331 | 3R | 8082708..8083152 | 120..564 | 2225 | 100 | Plus |
| 3R | 32079331 | 3R | 8082393..8082497 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6915 | 1482..1593 | 120 | 60.7 | Plus |
BS13461.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:21 Download gff for
BS13461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-RA | 447..3504 | 17..3074 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:03 Download gff for
BS13461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-RA | 447..3504 | 17..3074 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:00 Download gff for
BS13461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-RA | 447..3504 | 17..3074 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:26 Download gff for
BS13461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mAChR-B-RA | 447..3504 | 17..3074 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:26 Download gff for
BS13461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8082393..8082496 | 17..120 | 100 | -> | Plus |
| 3R | 8082709..8083151 | 121..563 | 100 | -> | Plus |
| 3R | 8083220..8085730 | 564..3074 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:03 Download gff for
BS13461.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3908115..3908218 | 17..120 | 100 | -> | Plus |
| arm_3R | 3908431..3908873 | 121..563 | 100 | -> | Plus |
| arm_3R | 3908942..3911452 | 564..3074 | 100 | | Plus |
BS13461.3prime Sequence
793 bp (718 high quality bases) assembled on 2006-10-13
> BS13461.3prime
ATGGTCTAGAAAGCTTTAGGTCATGTGCAGATCCCCCTTGAGGATCCGCG
TAAAGGTCTTCTTGAACTGCTGATTGGCCAGAGCGTAGCAAAAAGGATTC
ATCGGGCTGTTGGCGTAGCAGAGGAAGTACGAGAACATGTAGAGGTGTTC
ATTGATGCAGGGCGGATGCCGGCAGAATCCCTCGACGAGGGCCAACACAT
GGTAGGGTGTCCAGCAGGCCACGAAGCAGCCCAAAATGAACGAGATCGTG
CGAAACGCTTTGCGAGCACGATTCTCCGACTTGGACTTCTGCCGTCCACC
CACTCCAAGGATCAGGGGTAGAGCCTTCTTGCTCTTGAAGTGCTTTCCTA
TCGAATGAATGAATGCCCTTTTGCTGGAGTTTCGGCTGGCCGCCAAACTC
TTCTCCTCCCTGTTGGCATCGTCATCCCCCGCGTTCTTTTTGGTGGCACC
AACACCGTCTTGTTCCCCGCCTCCACCCACACCGCCCGTACTGCTGGTGG
TGCCCGAGGTGGAGGGCATCTTGTTGGTATTACTGTCCGAGGTTTCTCGC
TCCTCAATCCTTTCCAGTGGCACCGGTGGTGTTACACCCGCCGCCGACTG
GGGCGTTCCCGTTTGTGGCGTTGAAGTCTTTACCTTGGGTGAGAGTGGCA
TTGGTGGCATCGGGGAATAGAGTATGGCATCCTTGCTGCTGGTCTCCATA
GGACTGGAGGCCCGGCGATGGGGACAGTCCGCAGCTAGCTTTCCGGGCAC
ATCCCACAGGCAGATGGGCCTCATGCAGCTCTCCCGCCTCACC
BS13461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7918-PA | 3060 | CG7918-RA | 2283..3060 | 793..16 | 3790 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mAChR-B-RB | 4030 | CG7918-RB | 1936..2713 | 793..16 | 3830 | 99.6 | Minus |
| mAChR-B-RA | 4823 | CG7918-RA | 2729..3506 | 793..16 | 3830 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8084955..8085732 | 793..16 | 3815 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:54:31 has no hits.
BS13461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:04 Download gff for
BS13461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-PA | 2283..3060 | 16..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:38:14 Download gff for
BS13461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-RA | 2729..3506 | 16..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:17 Download gff for
BS13461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mAChR-B-RA | 2729..3506 | 16..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:17 Download gff for
BS13461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8084955..8085732 | 16..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:38:14 Download gff for
BS13461.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3910677..3911454 | 16..793 | 99 | | Minus |
BS13461.5prime Sequence
713 bp (675 high quality bases) assembled on 2006-10-13
> BS13461.5prime
GAAGTTATCAGTCGACATGCGGTCGCTTAACAAGTCGGCGGGCGAGGAGG
AGCTGACTGGCCTGAATGGCAACTCCAGCGACTCCATCTATACCATCAAG
AACAAGTGGATCACCGACTGGAGCCTTAGAAGGGAGCGGGATAAGCTGTG
CAGCTTCATTTTCAAGCGAGTCCTGACGCACACGGAGTGCAAACGTCTGT
TGGAGGCGGCCAAGATCTATGGCGAGAGCAGTGACTTCAATTCCTGGCCG
GTTAATGAACAGCTGCAATGGTACAGGAACTTCGATGTGAACAATACGAA
CCTTCTGTTGGCTGTTAGAAATCAATCCTCTGATGGCGGTTCCACCATGT
CGGGATCCAGTTCCGACTCGGAGATTCTTGGTCCTGTTTTGCCACCATTT
GCACTGTGGCAGACGATCCTGATAGCCATATGCCTGGCGATCTGTATCAT
TCTTACGGTGGGCGGTAATATCCTGGTGCTACTGGCCTTCATCGTGGACA
GGAATATTCGGCAGCCCAGCAACTACTTTATTGCCTCCCTAGCAGCCACG
GATATGCTAATAGGAACCGTTTCGATGCCCTTCTACACGATATACGTGCT
CCAGGGTTATTGGGACCTGGGTCCGATGCTCTGCGATCTCTGGCTTTCCG
TCGACTATACTGTGTGTCTGGTGTCCCAATACACGGGGCTGTTGATCACG
ATAGATCGCTACT
BS13461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7918-PA | 3060 | CG7918-RA | 1..697 | 17..713 | 3410 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mAChR-B-RB | 4030 | CG7918-RB | 446..1142 | 17..713 | 3440 | 99.6 | Plus |
| mAChR-B-RA | 4823 | CG7918-RA | 447..1143 | 17..713 | 3440 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8082708..8083152 | 120..564 | 2225 | 100 | Plus |
| 3R | 32079331 | 3R | 8083218..8083369 | 562..713 | 715 | 98 | Plus |
| 3R | 32079331 | 3R | 8082393..8082497 | 17..121 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:19:23 has no hits.
BS13461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:04 Download gff for
BS13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-PA | 1..697 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:44 Download gff for
BS13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7918-RA | 444..1143 | 10..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:53 Download gff for
BS13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mAChR-B-RA | 444..1143 | 10..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:53 Download gff for
BS13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8083220..8083369 | 564..713 | 98 | | Plus |
| 3R | 8082390..8082496 | 10..120 | 96 | -> | Plus |
| 3R | 8082709..8083151 | 121..563 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:44 Download gff for
BS13461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3908112..3908218 | 10..120 | 96 | -> | Plus |
| arm_3R | 3908431..3908873 | 121..563 | 100 | -> | Plus |
| arm_3R | 3908942..3909091 | 564..713 | 98 | | Plus |
BS13461.pep Sequence
Translation from 16 to 3075
> BS13461.pep
MRSLNKSAGEEELTGLNGNSSDSIYTIKNKWITDWSLRRERDKLCSFIFK
RVLTHTECKRLLEAAKIYGESSDFNSWPVNEQLQWYRNFDVNNTNLLLAV
RNQSSDGGSTMSGSSSDSEILGPVLPPFALWQTILIAICLAICIILTVGG
NILVLLAFIVDRNIRQPSNYFIASLAATDMLIGTVSMPFYTIYVLKGYWD
LGPMLCDLWLSVDYTVCLVSQYTVLLITIDRYCSVKIAAKYRSWRTRTRV
IYMVTITWIIPALLFFISIFGWEHFTGKRDLLPGQCAVQFLKDPIFNTAL
IIGYYWTTLIVLFVLYAGIYKTAYDMQKRSEAKQRKMQSMVALSAGAMSG
MAGHAAGIGVIEEKILKTKVELAGDQTDLDSACTTVIKRLSGSGQANPLA
VATEEVEKMTPEQRRASAAKIQEEAKKREAAVDAEKSERSSSPAFDSDEE
SSVNQAQQLITQQKLNNMRKRSSIGLVFGAQAALLATRGKGNLQKSTTNS
KSIEAMHQYHHHQQHHHNQSPLQRAQSKEEMRSLHHHQNQQQPHHQHHQN
QPNPPLDRPKRTSCSTLSQIAEHDRLVDLSAPPTLLNTSDPLSPVDLAPI
EVPSDQVHQGLVQTILPPPDAFQCPTPLSDDYSDRPFGNSSGNSELALTY
DLMTNSELRYMDESSAMLASVTANSTTSPNDSVQGKPPVLPPPPPARRNP
PKSNLNQSLSQTPSQNQSPSQSLSLNLNPNHNQSQSQSIEEAVAIEKRLL
VSYTGIEDFAKVRRESCIEAICLLDVPGKLAADCPHRRASSPMETSSKDA
ILYSPMPPMPLSPKVKTSTPQTGTPQSAAGVTPPVPLERIEERETSDSNT
NKMPSTSGTTSSTGGVGGGGEQDGVGATKKNAGDDDANREEKSLAASRNS
SKRAFIHSIGKHFKSKKALPLILGVGGRQKSKSENRARKAFRTISFILGC
FVACWTPYHVLALVEGFCRHPPCINEHLYMFSYFLCYANSPMNPFCYALA
NQQFKKTFTRILKGDLHMT*
BS13461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mAChR-B-PA | 1019 | CG7918-PA | 1..1019 | 1..1019 | 5305 | 100 | Plus |
| mAChR-B-PB | 755 | CG7918-PB | 1..491 | 1..491 | 2509 | 100 | Plus |
| mAChR-B-PB | 755 | CG7918-PB | 452..755 | 714..1019 | 1406 | 89.6 | Plus |
| mAChR-A-PA | 788 | CG4356-PA | 97..330 | 126..357 | 355 | 33.5 | Plus |
| mAChR-A-PB | 805 | CG4356-PB | 97..330 | 126..357 | 355 | 33.5 | Plus |
| 5-HT1B-PD | 562 | CG15113-PD | 50..287 | 94..336 | 280 | 30.6 | Plus |
| mAChR-A-PA | 788 | CG4356-PA | 606..775 | 817..1017 | 204 | 28 | Plus |
| mAChR-A-PB | 805 | CG4356-PB | 623..792 | 817..1017 | 204 | 28 | Plus |
