Clone BS13462 Report

Search the DGRC for BS13462

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG15529-RA
Protein status:BS13462.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13462.3prime Sequence

621 bp (621 high quality bases) assembled on 2006-10-13

> BS13462.3prime
ATGGTCTAGAAAGCTTCTAAGCGTAACTGATGGGACGGAGTTGGACGCAC
TGGCTCCGGACCTTGTTGGTGCAGAGAAGTGGATGCTCCGTGTAGAACTC
CACGATTTCCGAGGGGGATCCGAAGCAGCGCTCCTGAGACTTCTTCTGAC
CAATGGCATAGCGTTGTCTCCTATCCACTTGCCTTATGAACAGGTGATAG
TACTGATCCGCCGCCCAGATGCTCACTATGTAACGGATCCACTGGTCGGC
TGCCTTGAAAGGTCGAACCAGGCAGGACCCGTCCTCTCGTCCATGGAGCA
TTCGCTCCGCCGTAGGACGATCCACTGTGAAGTAGTACTGCTCCTTTTCC
ACATGCCTCTCCTCAATCTCCGCGTAGTTGACATCGGCATCGTCCACAAT
GACGTAATCCTCACGGGGCTGCTGTTGTGGATCGTCGTCGGTGCTGGAAA
CCCGTTCTGCGACGTCACCTTCCTGACTGGCCTGCCGCTGATAACCGAAG
CAGCAGCTACAGAAGGTGGGCGATCTGACTTCCATCAGGCTGTCCATCAT
GCGAGCCAGGAGATTGTGCAGAACCGTCCAGTAGACACGTGCACACCAGC
AGCACATGTCGACTGATAACT

BS13462.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-PA 591 CG15529-RA 1..591 607..17 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 1393 CG15529-RB 122..713 608..17 2960 100 Minus
CG15529-RA 965 CG15529-RA 122..713 608..17 2960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30152642..30153019 394..17 1890 100 Minus
3R 32079331 3R 30152180..30152394 608..394 1075 100 Minus
Blast to na_te.dros performed 2015-02-10 15:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2562..2606 475..431 126 75.6 Minus

BS13462.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:04 Download gff for BS13462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:49 Download gff for BS13462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..713 17..611 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:52 Download gff for BS13462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..713 17..611 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:52 Download gff for BS13462.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30152177..30152394 394..611 99 -> Minus
3R 30152643..30153019 17..393 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:49 Download gff for BS13462.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25977899..25978116 394..611 99 -> Minus
arm_3R 25978365..25978741 17..393 100   Minus

BS13462.5prime Sequence

621 bp (604 high quality bases) assembled on 2006-10-13

> BS13462.5prime
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTTAGAAGCTTTCTAGACC

BS13462.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-PA 591 CG15529-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 1393 CG15529-RB 122..713 16..607 2960 100 Plus
CG15529-RA 965 CG15529-RA 122..713 16..607 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30152642..30153019 230..607 1890 100 Plus
3R 32079331 3R 30152180..30152394 16..230 1075 100 Plus
Blast to na_te.dros performed 2015-02-10 21:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2562..2606 149..193 126 75.6 Plus

BS13462.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:05 Download gff for BS13462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:04 Download gff for BS13462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..713 13..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:08 Download gff for BS13462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..713 13..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:08 Download gff for BS13462.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30152177..30152394 13..230 99 -> Plus
3R 30152643..30153019 231..607 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:04 Download gff for BS13462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25977899..25978116 13..230 99 -> Plus
arm_3R 25978365..25978741 231..607 100   Plus

BS13462.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ637461

> BS13462.complete
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTTAGAAGCTTTCTAGACCAT

BS13462.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 591 CG15529-PB 1..591 17..607 2955 100 Plus
CG15529-RA 591 CG15529-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 1393 CG15529-RB 122..713 16..607 2960 100 Plus
CG15529-RA 965 CG15529-RA 122..713 16..607 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30152642..30153019 230..607 1890 100 Plus
3R 32079331 3R 30152180..30152394 16..230 1075 100 Plus
Blast to na_te.dros performed 2014-11-27 13:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2562..2606 149..193 126 75.6 Plus

BS13462.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:13 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:02 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 116..710 13..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:08 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 123..713 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:13 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 116..710 13..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:03 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 123..713 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:03 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30152181..30152394 17..230 100 -> Plus
3R 30152643..30153019 231..607 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:08 Download gff for BS13462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25977903..25978116 17..230 100 -> Plus
arm_3R 25978365..25978741 231..607 100   Plus

BS13462.pep Sequence

Translation from 16 to 606

> BS13462.pep
MCCWCARVYWTVLHNLLARMMDSLMEVRSPTFCSCCFGYQRQASQEGDVA
ERVSSTDDDPQQQPREDYVIVDDADVNYAEIEERHVEKEQYYFTVDRPTA
ERMLHGREDGSCLVRPFKAADQWIRYIVSIWAADQYYHLFIRQVDRRQRY
AIGQKKSQERCFGSPSEIVEFYTEHPLLCTNKVRSQCVQLRPISYA*

BS13462.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-PB 196 CG15529-PB 1..196 1..196 1068 100 Plus
CG15529-PA 196 CG15529-PA 1..196 1..196 1068 100 Plus