Clone Sequence Records
BS13462.3prime Sequence
621 bp (621 high quality bases) assembled on 2006-10-13
> BS13462.3prime
ATGGTCTAGAAAGCTTCTAAGCGTAACTGATGGGACGGAGTTGGACGCAC
TGGCTCCGGACCTTGTTGGTGCAGAGAAGTGGATGCTCCGTGTAGAACTC
CACGATTTCCGAGGGGGATCCGAAGCAGCGCTCCTGAGACTTCTTCTGAC
CAATGGCATAGCGTTGTCTCCTATCCACTTGCCTTATGAACAGGTGATAG
TACTGATCCGCCGCCCAGATGCTCACTATGTAACGGATCCACTGGTCGGC
TGCCTTGAAAGGTCGAACCAGGCAGGACCCGTCCTCTCGTCCATGGAGCA
TTCGCTCCGCCGTAGGACGATCCACTGTGAAGTAGTACTGCTCCTTTTCC
ACATGCCTCTCCTCAATCTCCGCGTAGTTGACATCGGCATCGTCCACAAT
GACGTAATCCTCACGGGGCTGCTGTTGTGGATCGTCGTCGGTGCTGGAAA
CCCGTTCTGCGACGTCACCTTCCTGACTGGCCTGCCGCTGATAACCGAAG
CAGCAGCTACAGAAGGTGGGCGATCTGACTTCCATCAGGCTGTCCATCAT
GCGAGCCAGGAGATTGTGCAGAACCGTCCAGTAGACACGTGCACACCAGC
AGCACATGTCGACTGATAACT
BS13462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-PA | 591 | CG15529-RA | 1..591 | 607..17 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 1393 | CG15529-RB | 122..713 | 608..17 | 2960 | 100 | Minus |
CG15529-RA | 965 | CG15529-RA | 122..713 | 608..17 | 2960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30152642..30153019 | 394..17 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 30152180..30152394 | 608..394 | 1075 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 475..431 | 126 | 75.6 | Minus |
BS13462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:04 Download gff for
BS13462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:49 Download gff for
BS13462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..713 | 17..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:52 Download gff for
BS13462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..713 | 17..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:52 Download gff for
BS13462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30152177..30152394 | 394..611 | 99 | -> | Minus |
3R | 30152643..30153019 | 17..393 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:49 Download gff for
BS13462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25977899..25978116 | 394..611 | 99 | -> | Minus |
arm_3R | 25978365..25978741 | 17..393 | 100 | | Minus |
BS13462.5prime Sequence
621 bp (604 high quality bases) assembled on 2006-10-13
> BS13462.5prime
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTTAGAAGCTTTCTAGACC
BS13462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-PA | 591 | CG15529-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 1393 | CG15529-RB | 122..713 | 16..607 | 2960 | 100 | Plus |
CG15529-RA | 965 | CG15529-RA | 122..713 | 16..607 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30152642..30153019 | 230..607 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 30152180..30152394 | 16..230 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 149..193 | 126 | 75.6 | Plus |
BS13462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:05 Download gff for
BS13462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:04 Download gff for
BS13462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..713 | 13..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:08 Download gff for
BS13462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..713 | 13..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:08 Download gff for
BS13462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30152177..30152394 | 13..230 | 99 | -> | Plus |
3R | 30152643..30153019 | 231..607 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:04 Download gff for
BS13462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25977899..25978116 | 13..230 | 99 | -> | Plus |
arm_3R | 25978365..25978741 | 231..607 | 100 | | Plus |
BS13462.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ637461
> BS13462.complete
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTTAGAAGCTTTCTAGACCAT
BS13462.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 591 | CG15529-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG15529-RA | 591 | CG15529-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 1393 | CG15529-RB | 122..713 | 16..607 | 2960 | 100 | Plus |
CG15529-RA | 965 | CG15529-RA | 122..713 | 16..607 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30152642..30153019 | 230..607 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 30152180..30152394 | 16..230 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 149..193 | 126 | 75.6 | Plus |
BS13462.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:13 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:02 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 116..710 | 13..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:08 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 123..713 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:13 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 116..710 | 13..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:03 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 123..713 | 17..607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:03 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30152181..30152394 | 17..230 | 100 | -> | Plus |
3R | 30152643..30153019 | 231..607 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:08 Download gff for
BS13462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25977903..25978116 | 17..230 | 100 | -> | Plus |
arm_3R | 25978365..25978741 | 231..607 | 100 | | Plus |
BS13462.pep Sequence
Translation from 16 to 606
> BS13462.pep
MCCWCARVYWTVLHNLLARMMDSLMEVRSPTFCSCCFGYQRQASQEGDVA
ERVSSTDDDPQQQPREDYVIVDDADVNYAEIEERHVEKEQYYFTVDRPTA
ERMLHGREDGSCLVRPFKAADQWIRYIVSIWAADQYYHLFIRQVDRRQRY
AIGQKKSQERCFGSPSEIVEFYTEHPLLCTNKVRSQCVQLRPISYA*
BS13462.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-PB | 196 | CG15529-PB | 1..196 | 1..196 | 1068 | 100 | Plus |
CG15529-PA | 196 | CG15529-PA | 1..196 | 1..196 | 1068 | 100 | Plus |