Clone Sequence Records
BS13463.3prime Sequence
555 bp (549 high quality bases) assembled on 2006-10-13
> BS13463.3prime
ATGGTCTAGAAAGCTTTTAGAAGAACTTAACGCCGTGGCTGCCGTCCATC
TCGATCAGCTCACACCTGCCCTTTTCCTCCAGCAACCGGAGGGCACTGAG
CAGCACCGCCTCGTCCACGCCGTAAAAGTCCAGGTGAGAGGTGTTCTCGC
CGGAGGCTATTTCGTACAGCGTGCAGATGGTGTTCGTCTGGCCCGTTTCC
TGCACCCAGTCGTACACCATGTTGCCGTACTCCTCGAGGGTGAACCAGTA
CACCTGCCACTCCTGGCGTCGCTTGTCCAGCGGATTCGCATGCCCGCTCC
GCTCCAGCTCGCCCAGAATGGCCAGGACGAGTTCCGGCGAGAGGCGGCGC
TTCAGCGCTTCGTTGTGGAACAGCGGCGAGTTCTGGTCCCCAATGCTGAG
AGTAAACCTATTCGTGTGCCTGAGGTATTTGAGAAAGAGATCTGTCCAGA
CCTTCAGCTGCTGCTGTCTGGTTTCTTCGTGGGGCTGTAGTGTAAAGAAG
GGTGGGAAGGTGTACTCCCAGGGCCACTGGAACTCCGCCATGTCGACTGA
TAACT
BS13463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14750-PA | 525 | l(2)44Db-RA | 1..525 | 541..17 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps25-RA | 678 | CG14750-RA | 75..600 | 542..17 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8625628..8626102 | 491..17 | 2375 | 100 | Minus |
| 2R | 25286936 | 2R | 8625525..8625575 | 542..492 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:10:48 has no hits.
BS13463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:05 Download gff for
BS13463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14750-PA | 1..525 | 17..541 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:31 Download gff for
BS13463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 9..551 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:04 Download gff for
BS13463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 9..551 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:04 Download gff for
BS13463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8625520..8625575 | 492..551 | 93 | -> | Minus |
| 2R | 8625628..8626102 | 17..491 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:31 Download gff for
BS13463.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4513025..4513080 | 492..551 | 93 | -> | Minus |
| arm_2R | 4513133..4513607 | 17..491 | 100 | -> | Minus |
BS13463.5prime Sequence
545 bp (538 high quality bases) assembled on 2006-10-13
> BS13463.5prime
GAAGTTATCAGTCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCT
TCCCACCCTTCTTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAG
CTGAAGGTCTGGACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAG
GTTTACTCTCAGCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAG
CGCTGAAGCGCCGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAG
CTGGAGCGGAGCGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTG
GCAGGTGTACTGGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACT
GGGTGCAGGAAACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATA
GCCTCCGGCGAGAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGC
GGTGCTGCTCAGTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGC
TGATCGAGATGGACGGCAGCCACGGCGTTAAGTTCTTCTAAAAGC
BS13463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14750-PA | 525 | l(2)44Db-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps25-RA | 678 | CG14750-RA | 75..600 | 16..541 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8625628..8626102 | 67..541 | 2375 | 100 | Plus |
| 2R | 25286936 | 2R | 8625525..8625575 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:17:15 has no hits.
BS13463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:06 Download gff for
BS13463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14750-PA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:05 Download gff for
BS13463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..601 | 7..545 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:12 Download gff for
BS13463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..601 | 7..545 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:12 Download gff for
BS13463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8625520..8625575 | 7..66 | 93 | -> | Plus |
| 2R | 8625628..8626103 | 67..545 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:05 Download gff for
BS13463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4513025..4513080 | 7..66 | 93 | -> | Plus |
| arm_2R | 4513133..4513608 | 67..545 | 99 | | Plus |
BS13463.complete Sequence
557 bp assembled on 2006-11-01
GenBank Submission: FJ637462
> BS13463.complete
GAAGTTATCAGTCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCT
TCCCACCCTTCTTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAG
CTGAAGGTCTGGACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAG
GTTTACTCTCAGCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAG
CGCTGAAGCGCCGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAG
CTGGAGCGGAGCGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTG
GCAGGTGTACTGGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACT
GGGTGCAGGAAACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATA
GCCTCCGGCGAGAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGC
GGTGCTGCTCAGTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGC
TGATCGAGATGGACGGCAGCCACGGCGTTAAGTTCTTCTAAAAGCTTTCT
AGACCAT
BS13463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps25-RA | 525 | CG14750-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps25-RA | 678 | CG14750-RA | 75..600 | 16..541 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8625628..8626102 | 67..541 | 2375 | 100 | Plus |
| 2R | 25286936 | 2R | 8625525..8625575 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:31:20 has no hits.
BS13463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:30 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:34 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 7..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:43 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 76..598 | 17..539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:30 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 70..605 | 7..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:01 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps25-RA | 76..598 | 17..539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:01 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8625526..8625575 | 17..66 | 100 | -> | Plus |
| 2R | 8625628..8626100 | 67..539 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:43 Download gff for
BS13463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4513031..4513080 | 17..66 | 100 | -> | Plus |
| arm_2R | 4513133..4513605 | 67..539 | 100 | | Plus |
BS13463.pep Sequence
Translation from 16 to 540
> BS13463.pep
MAEFQWPWEYTFPPFFTLQPHEETRQQQLKVWTDLFLKYLRHTNRFTLSI
GDQNSPLFHNEALKRRLSPELVLAILGELERSGHANPLDKRRQEWQVYWF
TLEEYGNMVYDWVQETGQTNTICTLYEIASGENTSHLDFYGVDEAVLLSA
LRLLEEKGRCELIEMDGSHGVKFF*
BS13463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps25-PA | 174 | CG14750-PA | 1..174 | 1..174 | 944 | 100 | Plus |
