Clone BS13464 Report

Search the DGRC for BS13464

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG33178-RA
Protein status:BS13464.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13464.5prime Sequence

528 bp (528 high quality bases) assembled on 2006-10-13

> BS13464.5prime
GAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGA
TGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGC
TATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCT
GCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGG
ATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAG
CGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTT
TATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCT
GCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTT
TACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCAC
CATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCC
TAAGCTTTATATGAAAGCTTTCTAGACC

BS13464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-PA 498 CG33178-RA 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 825 CG33178-RC 50..549 16..515 2500 100 Plus
CG33178-RA 585 CG33178-RA 50..549 16..515 2500 100 Plus
CG33178-RB 621 CG33178-RB 251..585 181..515 1675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15083486..15083741 260..515 1280 100 Plus
X 23542271 X 15082876..15083041 16..181 830 100 Plus
X 23542271 X 15083255..15083337 180..262 415 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:18:23 has no hits.

BS13464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:06 Download gff for BS13464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-PA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:12 Download gff for BS13464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..555 9..520 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:24 Download gff for BS13464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..555 9..520 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:24 Download gff for BS13464.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15082869..15083041 9..181 98 -> Plus
X 15083257..15083336 182..261 100 -> Plus
X 15083488..15083747 262..520 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:12 Download gff for BS13464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14976902..14977074 9..181 98 -> Plus
arm_X 14977290..14977369 182..261 100 -> Plus
arm_X 14977521..14977780 262..520 98   Plus

BS13464.3prime Sequence

528 bp (528 high quality bases) assembled on 2006-10-13

> BS13464.3prime
ATGGTCTAGAAAGCTTTCATATAAAGCTTAGGGTACGCAGGGCGACCACG
GCGGCCATGTAGAAGGTGATCAGTAGCATGGTGGCGAAGGCTAGAATCCT
CGATGGCTGCGGCACCGGATAAACGGCGTAAACCAGAGTGTGTATGATCC
TGGCCACGGAGGCCACTCGGAACAGTATGCAGGCCACATCGGCATTCGGA
TTGGTACTGATATAAATCAAGGACATGATAAAATACGGCAGAATGTTCTC
CATGTCATTGCGATGGGCCCTTCTGACCCGCTCCACATGCGGATCATCGA
ATTGCACTTCAAGATTCTTGAAGAACAGATCCTCCTGGTTGGGAAAGATC
TTATACCGGAAACGCTGAACGGCCGTTAGCAGCGACATGAGCAGCATCTT
CACCACCAGGACTGTGGACCAAAAAAGATAGCAGCAAAAGACAGGATTCT
CCAGGGTAAACATATCGCCGGGCGATGTCATCATCTTGCTGGAATTACTA
GCTGCGGCCGACATGTCGACTGATAACT

BS13464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-PA 498 CG33178-RA 1..498 514..17 2490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 825 CG33178-RC 50..549 515..16 2500 100 Minus
CG33178-RA 585 CG33178-RA 50..549 515..16 2500 100 Minus
CG33178-RB 621 CG33178-RB 251..585 350..16 1675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15083486..15083741 271..16 1280 100 Minus
X 23542271 X 15082876..15083041 515..350 830 100 Minus
X 23542271 X 15083255..15083337 351..269 415 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:40:12 has no hits.

BS13464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:06 Download gff for BS13464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-PA 1..498 17..514 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:58 Download gff for BS13464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..555 11..522 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:41 Download gff for BS13464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..555 11..522 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:41 Download gff for BS13464.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15082869..15083041 350..522 98 -> Minus
X 15083257..15083336 270..349 100 -> Minus
X 15083488..15083747 11..269 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:58 Download gff for BS13464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14976902..14977074 350..522 98 -> Minus
arm_X 14977290..14977369 270..349 100 -> Minus
arm_X 14977521..14977780 11..269 98   Minus

BS13464.complete Sequence

530 bp assembled on 2006-11-01

GenBank Submission: FJ637463

> BS13464.complete
GAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGA
TGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGC
TATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCT
GCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGG
ATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAG
CGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTT
TATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCT
GCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTT
TACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCAC
CATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCC
TAAGCTTTATATGAAAGCTTTCTAGACCAT

BS13464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 498 CG33178-PC 1..498 17..514 2490 100 Plus
CG33178-RA 498 CG33178-PA 1..498 17..514 2490 100 Plus
CG33178-RB 534 CG33178-PB 201..534 181..514 1670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 825 CG33178-RC 50..549 16..515 2500 100 Plus
CG33178-RA 585 CG33178-RA 50..549 16..515 2500 100 Plus
CG33178-RB 621 CG33178-RB 251..585 181..515 1675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15083486..15083741 260..515 1280 100 Plus
X 23542271 X 15082876..15083041 16..181 830 100 Plus
X 23542271 X 15083255..15083337 180..262 415 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:09:17 has no hits.

BS13464.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:43 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 1..498 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:38 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..555 9..520 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:30 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 51..547 17..513 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:43 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..555 9..520 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:06 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 51..547 17..513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:06 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
X 15083488..15083739 262..513 100   Plus
X 15082877..15083041 17..181 100 -> Plus
X 15083257..15083336 182..261 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:30 Download gff for BS13464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14976910..14977074 17..181 100 -> Plus
arm_X 14977290..14977369 182..261 100 -> Plus
arm_X 14977521..14977772 262..513 100   Plus

BS13464.pep Sequence

Translation from 16 to 513

> BS13464.pep
MSAAASNSSKMMTSPGDMFTLENPVFCCYLFWSTVLVVKMLLMSLLTAVQ
RFRYKIFPNQEDLFFKNLEVQFDDPHVERVRRAHRNDMENILPYFIMSLI
YISTNPNADVACILFRVASVARIIHTLVYAVYPVPQPSRILAFATMLLIT
FYMAAVVALRTLSFI*

BS13464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-PC 165 CG33178-PC 1..165 1..165 840 100 Plus
CG33178-PA 165 CG33178-PA 1..165 1..165 840 100 Plus
CG33178-PB 177 CG33178-PB 1..177 1..165 817 93.2 Plus
Mgstl-PA 152 CG1742-PA 1..146 12..157 446 61 Plus
CG33177-PA 167 CG33177-PA 19..167 18..165 405 52.3 Plus