Clone Sequence Records
BS13465.3prime Sequence
645 bp (644 high quality bases) assembled on 2006-10-13
> BS13465.3prime
ATGGTCTAGAAAGCTTTTAGTGGCTGTTGTCCAGGCGCAGAATCAGTGCA
TCCACCACATTGTAGATCTCATCGAAATGCGGTCGGGATTCGGCGTCGGC
TGCCCAGCACTGGAGCATCAGTCGGTACATCTCCTCGGGCGTGCTCTTCG
GCGTTGGCATACGATATCCCGTATCGATGCGCTCTCTGGCTCTGGAGTTG
GTCATGCCGGAGTAGGGTGTGTCGCCCTTGGAGAAGATCTCCCACATCAG
TATGCCATAGGACCACACATCGCACAACGAAGTGTACTTGCCGAAATTCA
AGGCCTCGGGAGCTGTCCACTTCACAGGTATTTGTTTCATGCCATCGGAA
ACTATATATTCCTCTTCCTCGCGAGACATTCCGAAATCGGAGATCTTCAC
ACTGTGCTCCAAGTCAACGAGACAATTACGCGCCGCCAGATCGCGATGAA
TGCAGTTTTTGGACTCCAGATATCGCATGCCTGCCGCCGCATCTCTGCAC
ATGCCCATTTGTTGGCGAGTGGTGAGGCCATTGGAGTTCTTGCGTAAATA
AGTTAAAAGCGAACCACCGAGCACCAATTCCATGACAATCATGATGGGCT
GCTTCTGCACACAAATGCCAATCAATTTTACGATATTTGGATGAT
BS13465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8874-PA | 3978 | Fps85D-RA | 3350..3978 | 645..17 | 3145 | 100 | Minus |
| CG8874-PC | 1428 | Fps85D-RC | 800..1428 | 645..17 | 3145 | 100 | Minus |
| CG8874-PD | 1182 | Fps85D-RD | 554..1182 | 645..17 | 3145 | 100 | Minus |
| CG8874-PB | 2415 | Fps85D-RB | 1787..2415 | 645..17 | 3145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FER-RF | 3599 | CG8874-RF | 2333..2965 | 645..13 | 3150 | 99.8 | Minus |
| FER-RE | 3596 | CG8874-RE | 2330..2962 | 645..13 | 3150 | 99.8 | Minus |
| FER-RB | 3395 | CG8874-RB | 2129..2761 | 645..13 | 3150 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9368455..9368642 | 168..355 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 9368237..9368393 | 13..169 | 770 | 99.4 | Plus |
| 3R | 32079331 | 3R | 9368699..9368829 | 352..482 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 9368896..9368984 | 480..568 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 9369052..9369132 | 565..645 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:19:32 has no hits.
BS13465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:07 Download gff for
BS13465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8874-PB | 1787..2415 | 17..645 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:47 Download gff for
BS13465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fps85D-RB | 2129..2765 | 8..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:55 Download gff for
BS13465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FER-RB | 2129..2765 | 8..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:55 Download gff for
BS13465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9368233..9368392 | 8..168 | 97 | <- | Plus |
| 3R | 9368456..9368638 | 169..351 | 100 | <- | Plus |
| 3R | 9368699..9368827 | 352..480 | 100 | <- | Plus |
| 3R | 9368897..9368983 | 481..567 | 100 | <- | Plus |
| 3R | 9369055..9369132 | 568..645 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:47 Download gff for
BS13465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5193955..5194114 | 8..168 | 97 | <- | Plus |
| arm_3R | 5194178..5194360 | 169..351 | 100 | <- | Plus |
| arm_3R | 5194421..5194549 | 352..480 | 100 | <- | Plus |
| arm_3R | 5194619..5194705 | 481..567 | 100 | <- | Plus |
| arm_3R | 5194777..5194854 | 568..645 | 100 | | Plus |
BS13465.5prime Sequence
693 bp (674 high quality bases) assembled on 2006-10-13
> BS13465.5prime
GAAGTTATCAGTCGACATGGGCTTCTCATCAGCCCTCCAAAGTCGCGCCG
CCCACGAGGCGCTGATCGTCCGCCAGGATGCCGAACTCCGGCTAATGGAG
ACAATGAAGCGATCCATCCAGATGAAGGCCAAGTGCGACAAGGAGTACGC
CATCAGCCTGACCGCTGTGGCCCAGCAGGGTCTCAAGATCGATCGGGCTG
ACGAAATGCAAGGCAGCCTGATCTCCAAATCCTGGCGATCCTACATGGAT
GAACTGGACCACCAGGCCAAACAGTTCAAGTTCAACGCGGAGCAGCTGGA
GGTCGTCTGCGATAAGTTGACCCACCTCTCGCAGGACAAACGGAAGGCCA
GAAAGGCCTACCAGGAGGAGCATGCCAAGATCGCAGCACGCCTGAATCAT
CTCACCGACGAGGTGGTGCGCAAGAAATCTGAATACCAAAAACATTTGGA
GGGCTACAAGGCGCTGCGCACGCGCTTCGAGGAGAACTACATAAAGGCAC
CCAGTCGCAGTGGCCGCAAGCTGGACGATGTGCGTGACAAGTATCAGAAG
GCCTGCCGCANATTGCATCTCACACACAACGAGTACGTGCTGTCCATCAC
GGAAGCCATCGAAGTGGAGAAGGACTTTCGCAACGTCTTGCTGCCGGGAC
TGCTGGAGCATCAGCAGTCCGTTCAGGAGAGCTTCATCCTGCT
BS13465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8874-PA | 3978 | Fps85D-RA | 1..677 | 17..693 | 3366 | 99.8 | Plus |
| CG8874-PB | 2415 | Fps85D-RB | 1..677 | 17..693 | 3366 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FER-RF | 3599 | CG8874-RF | 342..1019 | 16..693 | 3379 | 99.9 | Plus |
| FER-RE | 3596 | CG8874-RE | 342..1019 | 16..693 | 3379 | 99.9 | Plus |
| FER-RB | 3395 | CG8874-RB | 342..1019 | 16..693 | 3379 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9392740..9392937 | 213..16 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 9373472..9373668 | 693..497 | 974 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9390886..9391075 | 400..211 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 9373779..9373875 | 497..401 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:23:15 has no hits.
BS13465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:08 Download gff for
BS13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8874-PB | 1..677 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:41 Download gff for
BS13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fps85D-RB | 337..1019 | 10..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:37 Download gff for
BS13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FER-RB | 337..1019 | 10..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:37 Download gff for
BS13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9373472..9373667 | 498..693 | 99 | <- | Minus |
| 3R | 9373779..9373875 | 401..497 | 100 | <- | Minus |
| 3R | 9390886..9391073 | 213..400 | 100 | <- | Minus |
| 3R | 9392741..9392942 | 10..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:41 Download gff for
BS13465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5199194..5199389 | 498..693 | 99 | <- | Minus |
| arm_3R | 5199501..5199597 | 401..497 | 100 | <- | Minus |
| arm_3R | 5216608..5216795 | 213..400 | 100 | <- | Minus |
| arm_3R | 5218463..5218664 | 10..212 | 98 | | Minus |
BS13465.complete Sequence
4010 bp assembled on 2010-08-12
GenBank Submission: KX804039
> BS13465.complete
GAAGTTATCAGTCGACATGGGCTTCTCATCAGCCCTCCAAAGTCGCGCCG
CCCACGAGGCGCTGATCGTCCGCCAGGATGCCGAACTCCGGCTAATGGAG
ACAATGAAGCGATCCATCCAGATGAAGGCCAAGTGCGACAAGGAGTACGC
CATCAGCCTGACCGCTGTGGCCCAGCAGGGTCTCAAGATCGATCGGGCTG
ACGAAATGCAAGGCAGCCTGATCTCCAAATCCTGGCGATCCTACATGGAT
GAACTGGACCACCAGGCCAAACAGTTCAAGTTCAACGCGGAGCAGCTGGA
GGTCGTCTGCGATAAGTTGACCCACCTCTCGCAGGACAAACGGAAGGCCA
GAAAGGCCTACCAGGAGGAGCATGCCAAGATCGCAGCACGCCTGAATCAT
CTCACCGACGAGGTGGTGCGCAAGAAATCTGAATACCAAAAACATTTGGA
GGGCTACAAGGCGCTGCGCACGCGCTTCGAGGAGAACTACATAAAGGCAC
CCAGTCGCAGTGGCCGCAAGCTGGACGATGTGCGTGACAAGTATCAGAAG
GCCTGCCGCAAATTGCATCTCACACACAACGAGTACGTGCTGTCCATCAC
GGAAGCCATCGAAGTGGAGAAGGACTTTCGCAACGTCTTGCTGCCGGGAC
TGCTGGAGCATCAGCAGTCCGTTCAGGAGAGCTTCATCCTGCTGTGGCGC
AACATCCTGCAGGAGGCGGCCCAGTATGGCGACCTCACGGCCGACAAGTA
CAAGGAGATCCAGAAGCGCATTGACACTGTGATAGGGAGCATCAATCCGA
CCGAGGAGTACGGCGAGTTCACCGAGAAATACAAAACCTCTCCCACAACA
CCGCTGCTCTTCCAGTTCGATGAGACGCTCATCCAGGATATTCCCGGCAA
ATTGCAGTCGAGCACATTGACAGTGGACAACCTCACGGTGGACTGGCTGC
GTAATCGTCTCCAGGAACTGGAGGGAGCCGTCAGGGATTGCCAGGAGAAG
CAGATGAAGATGATCGAGCATGTGAATGGTGGCTCGCCGGTGGCCAATGG
CAGCATTATATCCAACGGCAGCAACACATCCAACGGCATTCAGTCCAACA
AGGATAGCCTATGCCGCCAGTCGAAGGACCTTAATGCACTGCGCTGCCAG
GAGAAGCAGAAACAGAAGCTGGTGGACATGATCAAGTGCGCCCTGAACGA
GGTGGGATGCGAGGAGCTGCCCTCCGGTTGCGACGATGACCTCACCCTGG
AGCAGAACTTCATCGAGAATGGCTATAACAACGAACAGCAGAGATCCAAC
TCCACCAGTTCACCAGGTCTGGGCATAATGAACGAGCTGATGCGACGCGG
TGGGGTATTGACCCTCTTGCGTGGAAGGGGTCGCCACTTTAAGCGCAAGA
GTACACCACAACCGGCGACGCCGATGACGCGATCGCGACAAGGACGGTTC
AACAAGTTGCAACCACGATCCCAGAGCCTCGGATCCTTGTCGGTAATTAG
GGATGGGAATGGGCCAAGTCCTGCACGTTACGAGCCCATTACTAACCATC
GTTTGCGCCAGGCGGCAAGTGTTCATTATTTGGGCGAGGAGATCGCCACG
AGCTCCACTAATCCGCCCGATTTGACGCGTCTGCGACGAACCCAATGTTC
CATGTTGTGTTTGGGCGAGGACGAGGAGCCTGTTGTCCTTGCCTCGCCCG
CCCCGCTCACTCAGCTTACCGCTGCTGTCCTTACTAACACCAATAACAAT
CATATCTATGCCGATCTGGAGTTGGATAAAAAGAAGGATACTTCACCGAG
TCCAGAATGTAAGGGGGAGCAAATTCAACCGAAAAAAGAGCAAATACGAA
TTGAAATCAACCAAACCGCGCCTCAGAACTCCATTGATGCCCATCTGGAC
AGGATTGATGAGCTGAACCGAGTGCTAGACGATCGGCTGAAGCGTACTCT
TCAGCCCAGCGATGATGTGAATGCCATCGAAAGTGCCGAGGAGAATCACA
TACAAACCAGGAAGTTGGCCAAAGATCCAGATAGCCAAACGAAACGCAGC
TCCAGTTCCAGTTCAGAGTGCCGGTCCTCCAAGGACACGAGTCACTCCAA
GAAGCGTTCCCTGTCTTTTAGTCAGAAATCCATAAGCAACATATTCAGCA
ACCTAAAGGAGTTCTCTAAGAGTCCACTCGTTAGGATGGGCAAGAATCAT
ATCCTCAACGAAGAGCAGGATGCGAAAAGGACGCAGCCAAGTCAACATCA
TCATTCCAGTGGCAGTGATTGCCCCACAAACAGTAGCAGCTCCAGCAGTA
ATAATAATAATAATAATAAAAATACCAGTAGCAATAGCAATCACAGTGCC
TCACAGTCCACGATAATAACGAGCACGATCACCACCACCATAACGACTAC
AACTACCACGACGCCGTCCAAGGAAAACTCAAGACTGAAATTCAAAGTGC
CCAAGATCCAGAAGAAATCAAAGGCCATCCGCAATACATTCCGCTCCAAG
TTGCTCAATTTCCAGTTGAAGCGCTCCAAGCCGTGCAAACAGTGCACCAA
GAGACGTCGCATCCATCCCAGCAAAAGTGTCTTTGATTTTGCCAAAGAGT
TCGAGGTGGAACAACCGGCTGGTTCGGCGGCGGATGAGCAATTCTGCAAC
TGTCCGCCAGCTGGTCAAAAGCCTGTTAAGCCATCCGTCCAAATATCCGG
CCACAAAGATCACCCGTTCGAGTCCAGTTCTGGAGAGCTGGACGAGAACT
CGGATCGGGACATCGACAACGACGAGGAGGAGGAGGATAGCGCCAGTGAC
GACGTGCTCAGCATGAAGGATCACTGCTATTGCGTGCCCAGCCTGGCGGC
CAGTATATCGCTCTCCACAAATCGTCCGCTTTACGAGGAGGAATGGTTCC
ATGGCGTTCTGCCGCGCGAGGAAGTGGTTCGATTGCTGAATAACGATGGT
GACTTCCTGGTCCGCGAAACGATTCGAAACGAGGAGAGCCAGATTGTGCT
CAGTGTCTGTTGGAATGGCCATAAGCACTTCATTGTCCAGACCACCGGAG
AGGGTAATTTCCGGTTCGAGGGACCACCATTTGCCAGCATCCAGGAGCTG
ATCATGCATCAGTATCACTCGGAATTGCCAGTGACCGTGAAATCGGGAGC
CATACTCCGACGACCCGTTTGCCGGGAGCGCTGGGAGCTGAGCAACGATG
ATGTGGTACTTCTGGAGAGGATTGGTCGGGGAAACTTTGGGGATGTCTAC
AAGGCCAAACTGAAGTCCACCAAACTGGATGTGGCTGTCAAAACCTGTCG
AATGACCCTGCCCGACGAACAGAAGCGTAAATTCCTACAGGAAGGGCGCA
TCCTCAAGCAATACGATCATCCAAATATCGTAAAATTGATTGGCATTTGT
GTGCAGAAGCAGCCCATCATGATTGTCATGGAATTGGTGCTCGGTGGTTC
GCTTTTAACTTATTTACGCAAGAACTCCAATGGCCTCACCACTCGCCAAC
AAATGGGCATGTGCAGAGATGCGGCGGCAGGCATGCGATATCTGGAGTCC
AAAAACTGCATTCATCGCGATCTGGCGGCGCGTAATTGTCTCGTTGACTT
GGAGCACAGTGTGAAGATCTCCGATTTCGGAATGTCTCGCGAGGAAGAGG
AATATATAGTTTCCGATGGCATGAAACAAATACCTGTGAAGTGGACAGCT
CCCGAGGCCTTGAATTTCGGCAAGTACACTTCGTTGTGCGATGTGTGGTC
CTATGGCATACTGATGTGGGAGATCTTCTCCAAGGGCGACACACCCTACT
CCGGCATGACCAACTCCAGAGCCAGAGAGCGCATCGATACGGGATATCGT
ATGCCAACGCCGAAGAGCACGCCCGAGGAGATGTACCGACTGATGCTCCA
GTGCTGGGCAGCCGACGCCGAATCCCGACCGCATTTCGATGAGATCTACA
ATGTGGTGGATGCACTGATTCTGCGCCTGGACAACAGCCACTAAAAGCTT
TCTAGACCAT
BS13465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FER-RA | 3978 | CG8874-PA | 1..3978 | 17..3994 | 19860 | 99.9 | Plus |
| FER-RE | 2616 | CG8874-PE | 1..1476 | 17..1492 | 7380 | 100 | Plus |
| FER-RF | 2619 | CG8874-PF | 1..1479 | 17..1492 | 7315 | 99.8 | Plus |
| FER-RE | 2616 | CG8874-PE | 1477..2616 | 2855..3994 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FER-RA | 4958 | CG8874-RA | 342..4324 | 16..3998 | 19870 | 99.9 | Plus |
| FER-RD | 2303 | CG8874-RD | 1..1669 | 2330..3998 | 8330 | 99.9 | Plus |
| FER-RE | 3596 | CG8874-RE | 342..1818 | 16..1492 | 7385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9371015..9372582 | 2854..1287 | 7810 | 99.9 | Minus |
| 3R | 32079331 | 3R | 9369335..9369710 | 3230..2855 | 1880 | 100 | Minus |
| 3R | 32079331 | 3R | 9373331..9373668 | 834..497 | 1690 | 100 | Minus |
| 3R | 32079331 | 3R | 9372990..9373268 | 1113..835 | 1395 | 100 | Minus |
| 3R | 32079331 | 3R | 9369052..9369269 | 3446..3229 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 9392740..9392937 | 213..16 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 9390886..9391075 | 400..211 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 9368455..9368642 | 3843..3656 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 9372756..9372934 | 1291..1113 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 9368237..9368393 | 3998..3842 | 770 | 99.4 | Minus |
| 3R | 32079331 | 3R | 9368699..9368829 | 3659..3529 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 9373779..9373875 | 497..401 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 9368896..9368984 | 3531..3443 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:56:43 has no hits.
BS13465.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-12 09:37:27 Download gff for
BS13465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fps85D-RA | 340..4315 | 17..3992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:59 Download gff for
BS13465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fps85D-RA | 343..4318 | 17..3992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:16 Download gff for
BS13465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FER-RA | 343..4318 | 17..3992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:16 Download gff for
BS13465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9372990..9373268 | 835..1113 | 100 | <- | Minus |
| 3R | 9368456..9368638 | 3660..3842 | 100 | <- | Minus |
| 3R | 9368699..9368827 | 3531..3659 | 100 | <- | Minus |
| 3R | 9368897..9368983 | 3444..3530 | 100 | <- | Minus |
| 3R | 9368243..9368392 | 3843..3992 | 100 | <- | Minus |
| 3R | 9369055..9369268 | 3230..3443 | 100 | <- | Minus |
| 3R | 9369336..9369710 | 2855..3229 | 100 | <- | Minus |
| 3R | 9371015..9372577 | 1292..2854 | 99 | <- | Minus |
| 3R | 9372756..9372933 | 1114..1291 | 100 | <- | Minus |
| 3R | 9373331..9373667 | 498..834 | 100 | <- | Minus |
| 3R | 9373779..9373875 | 401..497 | 100 | <- | Minus |
| 3R | 9390886..9391073 | 213..400 | 100 | <- | Minus |
| 3R | 9392741..9392936 | 17..212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:59 Download gff for
BS13465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5194421..5194549 | 3531..3659 | 100 | <- | Minus |
| arm_3R | 5194619..5194705 | 3444..3530 | 100 | <- | Minus |
| arm_3R | 5194178..5194360 | 3660..3842 | 100 | <- | Minus |
| arm_3R | 5193965..5194114 | 3843..3992 | 100 | <- | Minus |
| arm_3R | 5194777..5194990 | 3230..3443 | 100 | <- | Minus |
| arm_3R | 5195058..5195432 | 2855..3229 | 100 | <- | Minus |
| arm_3R | 5196737..5198299 | 1292..2854 | 99 | <- | Minus |
| arm_3R | 5198478..5198655 | 1114..1291 | 100 | <- | Minus |
| arm_3R | 5198712..5198990 | 835..1113 | 100 | <- | Minus |
| arm_3R | 5199053..5199389 | 498..834 | 100 | <- | Minus |
| arm_3R | 5199501..5199597 | 401..497 | 100 | <- | Minus |
| arm_3R | 5216608..5216795 | 213..400 | 100 | <- | Minus |
| arm_3R | 5218463..5218658 | 17..212 | 100 | | Minus |
BS13465.pep Sequence
Translation from 16 to 3993
> BS13465.pep
MGFSSALQSRAAHEALIVRQDAELRLMETMKRSIQMKAKCDKEYAISLTA
VAQQGLKIDRADEMQGSLISKSWRSYMDELDHQAKQFKFNAEQLEVVCDK
LTHLSQDKRKARKAYQEEHAKIAARLNHLTDEVVRKKSEYQKHLEGYKAL
RTRFEENYIKAPSRSGRKLDDVRDKYQKACRKLHLTHNEYVLSITEAIEV
EKDFRNVLLPGLLEHQQSVQESFILLWRNILQEAAQYGDLTADKYKEIQK
RIDTVIGSINPTEEYGEFTEKYKTSPTTPLLFQFDETLIQDIPGKLQSST
LTVDNLTVDWLRNRLQELEGAVRDCQEKQMKMIEHVNGGSPVANGSIISN
GSNTSNGIQSNKDSLCRQSKDLNALRCQEKQKQKLVDMIKCALNEVGCEE
LPSGCDDDLTLEQNFIENGYNNEQQRSNSTSSPGLGIMNELMRRGGVLTL
LRGRGRHFKRKSTPQPATPMTRSRQGRFNKLQPRSQSLGSLSVIRDGNGP
SPARYEPITNHRLRQAASVHYLGEEIATSSTNPPDLTRLRRTQCSMLCLG
EDEEPVVLASPAPLTQLTAAVLTNTNNNHIYADLELDKKKDTSPSPECKG
EQIQPKKEQIRIEINQTAPQNSIDAHLDRIDELNRVLDDRLKRTLQPSDD
VNAIESAEENHIQTRKLAKDPDSQTKRSSSSSSECRSSKDTSHSKKRSLS
FSQKSISNIFSNLKEFSKSPLVRMGKNHILNEEQDAKRTQPSQHHHSSGS
DCPTNSSSSSSNNNNNNKNTSSNSNHSASQSTIITSTITTTITTTTTTTP
SKENSRLKFKVPKIQKKSKAIRNTFRSKLLNFQLKRSKPCKQCTKRRRIH
PSKSVFDFAKEFEVEQPAGSAADEQFCNCPPAGQKPVKPSVQISGHKDHP
FESSSGELDENSDRDIDNDEEEEDSASDDVLSMKDHCYCVPSLAASISLS
TNRPLYEEEWFHGVLPREEVVRLLNNDGDFLVRETIRNEESQIVLSVCWN
GHKHFIVQTTGEGNFRFEGPPFASIQELIMHQYHSELPVTVKSGAILRRP
VCRERWELSNDDVVLLERIGRGNFGDVYKAKLKSTKLDVAVKTCRMTLPD
EQKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSLLTYL
RKNSNGLTTRQQMGMCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVK
ISDFGMSREEEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGILM
WEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAAD
AESRPHFDEIYNVVDALILRLDNSH*
BS13465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FER-PA | 1325 | CG8874-PA | 1..1325 | 1..1325 | 6881 | 100 | Plus |
| FER-PE | 871 | CG8874-PE | 1..500 | 1..500 | 2533 | 98.8 | Plus |
| FER-PF | 872 | CG8874-PF | 1..501 | 1..500 | 2521 | 98.6 | Plus |
| FER-PB | 804 | CG8874-PB | 1..433 | 1..433 | 2199 | 99.1 | Plus |
| FER-PD | 393 | CG8874-PD | 1..393 | 933..1325 | 2088 | 100 | Plus |
| FER-PE | 871 | CG8874-PE | 492..871 | 946..1325 | 2012 | 100 | Plus |
| FER-PF | 872 | CG8874-PF | 493..872 | 946..1325 | 2012 | 100 | Plus |
| FER-PB | 804 | CG8874-PB | 426..804 | 947..1325 | 2008 | 100 | Plus |
