Clone BS13466 Report

Search the DGRC for BS13466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG9743-RA
Protein status:BS13466.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13466.3prime Sequence

748 bp (661 high quality bases) assembled on 2006-10-13

> BS13466.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGCATCTTGGCCAGCTCCACGATATCC
TCTCGGGGAATGTCCTTGTCCCCGAAGCCCCACACCGGATCCTTGTGGGC
ATGGTCGTCGTCCAGGAAGCGAGTTCCATCGCCGCATTTCTTGGCTCTCC
TCAAGACCATGTCAGGGGATACCGATTTACGTCCTTTGGCCAGGCCTAGC
CAGGCGCAAAAGTCGATGAAGCCGGTGGTGATGTTGAGGCTGTAGTTGCC
AAACTCGCCCGTCTTGTAGTCCCAGGGGAAAACGTGGTGGTAATTGTGCC
ATCCCTCTCCCATGGCCAGCAGGGAGACAATGGGAGCCTCAGTGGACATG
AGGTTCTTGTCGTACGGCTTGTTGCCGTACATGTGCGCCACGCTGTTCAC
GAAGAAGGCCACGTTGAGGGTCCAGGTGAAGCGCATGTTGAAGTTGATCC
AGAAGGACATCCAGAGATCCTCGTTCCAGAAGTACCAGGGCACGGCCACC
GGCAGGATGATGGAGCAGAGCGCGAAGAGCGGTATGTAGTACTTCCGCTG
GAACATGCAGACGGCATCCGCCTCCAGATCGGACATGTCGATGACCTTCC
TCTTGGCCACCACCTTGGGATGGGGCGTTAGGAACAGCCAGCCCACGTGG
GCGAAGAAGAAACCACGCTTCGCATTGTGCGGATCGGCGTCTGTCTCCGA
GAACTTGTGATGTATCCCTGTGATCAAGGGCCCACGTGTAGGCATCTT

BS13466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-PA 1263 CG9743-RA 563..1263 717..17 3505 100 Minus
CG9747-PA 1386 CG9747-RA 979..1040 325..264 235 95.1 Minus
CG5887-PA 1152 desat1-RA 880..944 310..246 200 92.3 Minus
CG5887-PC 1152 desat1-RC 880..944 310..246 200 92.3 Minus
CG5887-PE 1152 desat1-RE 880..944 310..246 200 92.3 Minus
CG5887-PB 1152 desat1-RB 880..944 310..246 200 92.3 Minus
CG5887-PD 1152 desat1-RD 880..944 310..246 200 92.3 Minus
CG9743-PA 1263 CG9743-RA 534..564 747..717 155 100 Minus
CG8630-PA 1227 CG8630-RA 859..903 307..263 150 93.3 Minus
CG5887-PA 1152 desat1-RA 489..555 701..635 135 88 Minus
CG5887-PC 1152 desat1-RC 489..555 701..635 135 88 Minus
CG5887-PE 1152 desat1-RE 489..555 701..635 135 88 Minus
CG5887-PB 1152 desat1-RB 489..555 701..635 135 88 Minus
CG5887-PD 1152 desat1-RD 489..555 701..635 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-RA 1733 CG9743-RA 727..1456 747..17 3630 99.9 Minus
Desat1-RD 1934 CG5887-RD 979..1094 318..203 310 84.5 Minus
Desat1-RB 1978 CG5887-RB 1023..1138 318..203 310 84.5 Minus
Desat1-RD 1934 CG5887-RD 588..662 709..635 225 86.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30197096..30197486 356..747 1910 99.7 Plus
3R 32079331 3R 30196864..30197041 179..356 890 100 Plus
3R 32079331 3R 30196637..30196800 17..180 820 100 Plus
3R 32079331 3R 12446661..12446776 318..203 310 84.5 Minus
3R 32079331 3R 30186150..30186255 224..329 305 85.8 Plus
3R 32079331 3R 12446148..12446222 709..635 225 86.7 Minus
3R 32079331 3R 13283516..13283602 319..233 225 83.9 Minus
3R 32079331 3R 30186709..30186785 636..712 205 84.4 Plus
Blast to na_te.dros performed on 2015-02-12 03:50:25 has no hits.

BS13466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:08 Download gff for BS13466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9743-PA 532..1263 17..748 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:35 Download gff for BS13466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 725..1459 12..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:29 Download gff for BS13466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 725..1459 12..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:29 Download gff for BS13466.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30196634..30196800 12..180 98 <- Plus
3R 30196866..30197041 181..356 100 <- Plus
3R 30197097..30197486 357..748 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:35 Download gff for BS13466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26022356..26022522 12..180 98 <- Plus
arm_3R 26022588..26022763 181..356 100 <- Plus
arm_3R 26022819..26023208 357..748 99   Plus

BS13466.5prime Sequence

781 bp (667 high quality bases) assembled on 2006-10-13

> BS13466.5prime
GAAGTTATCAGTCGACATGTGCCTTTCATCCCCGATTCCCGGCCAGAAAC
AGGCGACGTCTGTTGGCCACTGCAACGGATCGTGCAGCCTGGACAGGAAT
GGCAACCGCAGCGCAGCCATTGTCCCGAATGGAGGAGAGCTGAAGCACAG
AGGCCATGCCACAGACGCTACATCACACACCCTGGTCAAAGATGACGACA
ATTTGGGCTACAAGGAGGAGAACGCGGTCTACAAGGAGCAGCAGCTGCTG
CAGCAACAGGACCAGACGCTGAAGGAGGCGGAGCAGGTGGAGGAGGAAGA
GGAGTACCACCCGCAGATCAGATGGCCGGATCTGGGAGCACAGGCATTCC
TGCACATCGGTGCCCTCTACGGACTGTACCAGCTCTTCTACGCGAACTTC
TACACATTCCTCTGGGTGGTGGTCACCGTTTGGGTCTCCGGCATCGGCAT
CACGGCGGGAGCCCATCGCCTCTGGTCCCACAAGTCCTACACTGCATCGC
TGCCCCTGAGGATTCTGCTGGCCTTTGCCTTTTCGATCGCCGGCCAGAGA
GATGCCTACACGTGGGCCCTTGATCACAGGATACATCACAAGTTCTCGGA
GACAGACGCCGATCCGCACAATGCGAAGCGTGGTTTCTTCTTCGCCCACG
TGGGCTGGCTGTTCCTAACGCCCCATCCCAAGGTGGTGGCCAAAAGGAAG
GTCATCGACATGTCCGATCTGGAGGCGGATGCCGTCTGCATGTTCCAGCG
GAAGTACTACATACCGCTCTTCGCGCTCTGC

BS13466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-PA 1263 CG9743-RA 1..765 17..781 3800 99.8 Plus
CG5887-PA 1152 desat1-RA 489..555 595..661 135 88 Plus
CG5887-PC 1152 desat1-RC 489..555 595..661 135 88 Plus
CG5887-PE 1152 desat1-RE 489..555 595..661 135 88 Plus
CG5887-PB 1152 desat1-RB 489..555 595..661 135 88 Plus
CG5887-PD 1152 desat1-RD 489..555 595..661 135 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-RA 1733 CG9743-RA 192..958 15..781 3820 99.9 Plus
Desat1-RD 1934 CG5887-RD 588..662 587..661 225 86.7 Plus
Desat1-RB 1978 CG5887-RB 632..706 587..661 225 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30198494..30198894 416..16 2005 100 Minus
3R 32079331 3R 30197255..30197491 781..545 1170 99.6 Minus
3R 32079331 3R 30197551..30197682 547..416 660 100 Minus
3R 32079331 3R 12446148..12446222 587..661 225 86.7 Plus
3R 32079331 3R 30186709..30186785 660..584 205 84.4 Minus
Blast to na_te.dros performed on 2015-02-06 10:13:00 has no hits.

BS13466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:08 Download gff for BS13466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9743-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:10 Download gff for BS13466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 188..958 9..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:37 Download gff for BS13466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 188..958 9..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:37 Download gff for BS13466.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30197255..30197488 548..781 99 <- Minus
3R 30197551..30197681 417..547 100 <- Minus
3R 30198494..30198894 16..416 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:10 Download gff for BS13466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26022977..26023210 548..781 99 <- Minus
arm_3R 26023273..26023403 417..547 100 <- Minus
arm_3R 26024216..26024616 16..416 100   Minus

BS13466.complete Sequence

1295 bp assembled on 2006-11-01

GenBank Submission: FJ637464

> BS13466.complete
GAAGTTATCAGTCGACATGTGCCTTTCATCCCCGATTCCCGGCCAGAAAC
AGGCGACGTCTGTTGGCCACTGCAACGGATCGTGCAGCCTGGACAGGAAT
GGCAACCGCAGCGCAGCCATTGTCCCGAATGGAGGAGAGCTGAAGCACAG
AGGCCATGCCACAGACGCTACATCACACACCCTGGTCAAAGATGACGACA
ATTTGGGCTACAAGGAGGAGAACGCGGTCTACAAGGAGCAGCAGCTGCTG
CAGCAACAGGACCAGACGCTGAAGGAGGCGGAGCAGGTGGAGGAGGAAGA
GGAGTACCACCCGCAGATCAGATGGCCGGATCTGGGAGCACAGGCATTCC
TGCACATCGGTGCCCTCTACGGACTGTACCAGCTCTTCTACGCGAACTTC
TACACATTCCTCTGGGTGGTGGTCACCGTTTGGGTCTCCGGCATCGGCAT
CACGGCGGGAGCCCATCGCCTCTGGTCCCACAAGTCCTACACTGCATCGC
TGCCCCTGAGGATTCTGCTGGCCTTTGCCTTTTCGATCGCCGGCCAGAGA
GATGCCTACACGTGGGCCCTTGATCACAGGATACATCACAAGTTCTCGGA
GACAGACGCCGATCCGCACAATGCGAAGCGTGGTTTCTTCTTCGCCCACG
TGGGCTGGCTGTTCCTAACGCCCCATCCCAAGGTGGTGGCCAAGAGGAAG
GTCATCGACATGTCCGATCTGGAGGCGGATGCCGTCTGCATGTTCCAGCG
GAAGTACTACATACCGCTCTTCGCGCTCTGCTCCATCATCCTGCCGGTGG
CCGTGCCCTGGTACTTCTGGAACGAGGATCTCTGGATGTCCTTCTGGATC
AACTTCAACATGCGCTTCACCTGGACCCTCAACGTGGCCTTCTTCGTGAA
CAGCGTGGCGCACATGTACGGCAACAAGCCGTACGACAAGAACCTCATGT
CCACTGAGGCTCCCATTGTCTCCCTGCTGGCCATGGGAGAGGGATGGCAC
AATTACCACCACGTTTTCCCCTGGGACTACAAGACGGGCGAGTTTGGCAA
CTACAGCCTCAACATCACCACCGGCTTCATCGACTTTTGCGCCTGGCTAG
GCCTGGCCAAAGGACGTAAATCGGTATCCCCTGACATGGTCTTGAGGAGA
GCCAAGAAATGCGGCGATGGAACTCGCTTCCTGGACGACGACCATGCCCA
CAAGGATCCGGTGTGGGGCTTCGGGGACAAGGACATTCCCCGAGAGGATA
TCGTGGAGCTGGCCAAGATGCAGAACTAAAAGCTTTCTAGACCAT

BS13466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-RA 1263 CG9743-PA 1..1263 17..1279 6315 100 Plus
Desat1-RD 1152 CG5887-PD 872..987 978..1093 310 84.5 Plus
Desat1-RB 1152 CG5887-PB 872..987 978..1093 310 84.5 Plus
Desat1-RD 1152 CG5887-PD 481..555 587..661 225 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-RA 1733 CG9743-RA 192..1456 15..1279 6325 100 Plus
Desat1-RD 1934 CG5887-RD 979..1094 978..1093 310 84.5 Plus
Desat1-RB 1978 CG5887-RB 1023..1138 978..1093 310 84.5 Plus
Desat1-RD 1934 CG5887-RD 588..662 587..661 225 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30198494..30198894 416..16 2005 100 Minus
3R 32079331 3R 30197096..30197491 940..545 1980 100 Minus
3R 32079331 3R 30196864..30197041 1117..940 890 100 Minus
3R 32079331 3R 30196637..30196800 1279..1116 820 100 Minus
3R 32079331 3R 30197551..30197682 547..416 660 100 Minus
3R 32079331 3R 12446661..12446776 978..1093 310 84.5 Plus
3R 32079331 3R 30186150..30186255 1072..967 305 85.8 Minus
3R 32079331 3R 12446148..12446222 587..661 225 86.7 Plus
3R 32079331 3R 13283516..13283602 977..1063 225 83.9 Plus
3R 32079331 3R 30186709..30186785 660..584 205 84.4 Minus
Blast to na_te.dros performed on 2014-11-27 01:58:02 has no hits.

BS13466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:02 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 1..1263 17..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:39 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 186..1457 9..1284 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:08 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 194..1454 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:02 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 186..1457 9..1284 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:10 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
CG9743-RA 194..1454 17..1277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:10 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30197551..30197681 417..547 100 <- Minus
3R 30196639..30196800 1116..1277 100 <- Minus
3R 30196866..30197041 940..1115 100 <- Minus
3R 30197097..30197488 548..939 100 <- Minus
3R 30198494..30198893 17..416 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:08 Download gff for BS13466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26023273..26023403 417..547 100 <- Minus
arm_3R 26024216..26024615 17..416 100   Minus
arm_3R 26022361..26022522 1116..1277 100 <- Minus
arm_3R 26022588..26022763 940..1115 100 <- Minus
arm_3R 26022819..26023210 548..939 100 <- Minus

BS13466.pep Sequence

Translation from 16 to 1278

> BS13466.pep
MCLSSPIPGQKQATSVGHCNGSCSLDRNGNRSAAIVPNGGELKHRGHATD
ATSHTLVKDDDNLGYKEENAVYKEQQLLQQQDQTLKEAEQVEEEEEYHPQ
IRWPDLGAQAFLHIGALYGLYQLFYANFYTFLWVVVTVWVSGIGITAGAH
RLWSHKSYTASLPLRILLAFAFSIAGQRDAYTWALDHRIHHKFSETDADP
HNAKRGFFFAHVGWLFLTPHPKVVAKRKVIDMSDLEADAVCMFQRKYYIP
LFALCSIILPVAVPWYFWNEDLWMSFWINFNMRFTWTLNVAFFVNSVAHM
YGNKPYDKNLMSTEAPIVSLLAMGEGWHNYHHVFPWDYKTGEFGNYSLNI
TTGFIDFCAWLGLAKGRKSVSPDMVLRRAKKCGDGTRFLDDDHAHKDPVW
GFGDKDIPREDIVELAKMQN*

BS13466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9743-PA 420 CG9743-PA 1..420 1..420 2308 100 Plus
Desat1-PD 383 CG5887-PD 54..372 85..412 861 49.5 Plus
Desat1-PB 383 CG5887-PB 54..372 85..412 861 49.5 Plus
Desat1-PE 383 CG5887-PE 54..372 85..412 861 49.5 Plus
Desat1-PC 383 CG5887-PC 54..372 85..412 861 49.5 Plus