Clone Sequence Records
BS13467.3prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-13
> BS13467.3prime
ATGGTCTAGAAAGCTTTTAATAACGCCCATAGTTGGGCCCGAACCGGGCT
CCATCTCCGCCCAACTCGTCCAGGGCACCCATGGCACTCAGTTTCTGCAG
CCAGGCGGCATTAGAGTTGCCGTTGGACACGCGTGGATTGTTGATGTTGC
TGCTGCTGCTGCTGCCACCGGTGGCCTCATTGTGGAGACGCAGCTGTGGG
TGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTGGGTCCTCATTGCT
CAACTCCAAAATCTGCAGCATCAGTTCACGCAACTTGTCCAAATCGTCGC
CATGCGACCTTGTCGGCAGGTAACGGCCGTCGACCAGATGCGGTGGGACG
ACCAGGAGCAGCACCGTCATCCAAACCAAGAGCCACCTGTGTCCACTTCC
ACAGCCAATTCCAGTTCCGTGACTCCGTGGCACTCCCATGTCGACTGATA
ACT
BS13467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7105-PA | 423 | Proct-RA | 1..423 | 439..17 | 2115 | 100 | Minus |
CG15478-PA | 1659 | CG15478-RA | 561..587 | 165..139 | 135 | 100 | Minus |
CG17265-PA | 1824 | CG17265-RA | 1524..1550 | 165..139 | 135 | 100 | Minus |
CG1770-PB | 3546 | HDAC4-RB | 171..197 | 165..139 | 135 | 100 | Minus |
CG1770-PC | 3600 | HDAC4-RC | 384..410 | 165..139 | 135 | 100 | Minus |
CG1770-PA | 3747 | HDAC4-RA | 384..410 | 165..139 | 135 | 100 | Minus |
CG32133-PA | 6885 | CG32133-RA | 750..776 | 165..139 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 1886 | CG7105-RB | 202..624 | 439..17 | 2115 | 100 | Minus |
Proc-RA | 1977 | CG7105-RA | 293..715 | 439..17 | 2115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7865904..7866154 | 17..267 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 7870267..7870443 | 263..439 | 885 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 10:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 216..131 | 171 | 67.8 | Minus |
BS13467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:09 Download gff for
BS13467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7105-PA | 1..423 | 17..439 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:59 Download gff for
BS13467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..722 | 8..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:34 Download gff for
BS13467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-RA | 293..722 | 8..439 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:34 Download gff for
BS13467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7865897..7866149 | 8..262 | 98 | <- | Plus |
2L | 7870267..7870443 | 263..439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:59 Download gff for
BS13467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7865897..7866149 | 8..262 | 98 | <- | Plus |
arm_2L | 7870267..7870443 | 263..439 | 100 | | Plus |
BS13467.5prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-13
> BS13467.5prime
GAAGTTATCAGTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATTAAAAGCTTTCTAG
ACC
BS13467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7105-PA | 423 | Proct-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
CG15478-PA | 1659 | CG15478-RA | 561..587 | 291..317 | 135 | 100 | Plus |
CG17265-PA | 1824 | CG17265-RA | 1524..1550 | 291..317 | 135 | 100 | Plus |
CG1770-PB | 3546 | HDAC4-RB | 171..197 | 291..317 | 135 | 100 | Plus |
CG1770-PC | 3600 | HDAC4-RC | 384..410 | 291..317 | 135 | 100 | Plus |
CG1770-PA | 3747 | HDAC4-RA | 384..410 | 291..317 | 135 | 100 | Plus |
CG32133-PA | 6885 | CG32133-RA | 750..776 | 291..317 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 1886 | CG7105-RB | 202..624 | 17..439 | 2115 | 100 | Plus |
Proc-RA | 1977 | CG7105-RA | 293..715 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7865904..7866154 | 439..189 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 7870267..7870443 | 193..17 | 885 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 240..325 | 171 | 67.8 | Plus |
BS13467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:09 Download gff for
BS13467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7105-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:01 Download gff for
BS13467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..722 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:36 Download gff for
BS13467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-RA | 293..722 | 17..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:36 Download gff for
BS13467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7870267..7870443 | 17..193 | 100 | | Minus |
2L | 7865897..7866149 | 194..448 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:01 Download gff for
BS13467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7865897..7866149 | 194..448 | 98 | <- | Minus |
arm_2L | 7870267..7870443 | 17..193 | 100 | | Minus |
BS13467.complete Sequence
455 bp assembled on 2006-11-01
GenBank Submission: FJ637465
> BS13467.complete
GAAGTTATCAGTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATTAAAAGCTTTCTAG
ACCAT
BS13467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 423 | CG7105-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
Proc-RA | 423 | CG7105-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 1886 | CG7105-RB | 202..624 | 17..439 | 2115 | 100 | Plus |
Proc-RA | 1977 | CG7105-RA | 293..715 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7865904..7866154 | 439..189 | 1255 | 100 | Minus |
2L | 23513712 | 2L | 7870267..7870443 | 193..17 | 885 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 240..325 | 171 | 67.8 | Plus |
BS13467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:06 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smr-RC | 589..605 | 221..238 | 94 | -> | Plus |
Smr-RC | 751..767 | 239..255 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:43 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..722 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:50 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..713 | 17..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:06 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smr-RC | 1947..1963 | 221..238 | 94 | -> | Plus |
Smr-RC | 2109..2125 | 239..255 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:12 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-RA | 293..713 | 17..437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:12 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7865906..7866149 | 194..437 | 100 | <- | Minus |
2L | 7870267..7870443 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:50 Download gff for
BS13467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7865906..7866149 | 194..437 | 100 | <- | Minus |
arm_2L | 7870267..7870443 | 17..193 | 100 | | Minus |
BS13467.pep Sequence
Translation from 16 to 438
> BS13467.pep
MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL
DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN
NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY*
BS13467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-PB | 140 | CG7105-PB | 1..140 | 1..140 | 749 | 100 | Plus |
Proc-PA | 140 | CG7105-PA | 1..140 | 1..140 | 749 | 100 | Plus |