Clone BS13467 Report

Search the DGRC for BS13467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptProc-RA
Protein status:BS13467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13467.3prime Sequence

453 bp (453 high quality bases) assembled on 2006-10-13

> BS13467.3prime
ATGGTCTAGAAAGCTTTTAATAACGCCCATAGTTGGGCCCGAACCGGGCT
CCATCTCCGCCCAACTCGTCCAGGGCACCCATGGCACTCAGTTTCTGCAG
CCAGGCGGCATTAGAGTTGCCGTTGGACACGCGTGGATTGTTGATGTTGC
TGCTGCTGCTGCTGCCACCGGTGGCCTCATTGTGGAGACGCAGCTGTGGG
TGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTGGGTCCTCATTGCT
CAACTCCAAAATCTGCAGCATCAGTTCACGCAACTTGTCCAAATCGTCGC
CATGCGACCTTGTCGGCAGGTAACGGCCGTCGACCAGATGCGGTGGGACG
ACCAGGAGCAGCACCGTCATCCAAACCAAGAGCCACCTGTGTCCACTTCC
ACAGCCAATTCCAGTTCCGTGACTCCGTGGCACTCCCATGTCGACTGATA
ACT

BS13467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7105-PA 423 Proct-RA 1..423 439..17 2115 100 Minus
CG15478-PA 1659 CG15478-RA 561..587 165..139 135 100 Minus
CG17265-PA 1824 CG17265-RA 1524..1550 165..139 135 100 Minus
CG1770-PB 3546 HDAC4-RB 171..197 165..139 135 100 Minus
CG1770-PC 3600 HDAC4-RC 384..410 165..139 135 100 Minus
CG1770-PA 3747 HDAC4-RA 384..410 165..139 135 100 Minus
CG32133-PA 6885 CG32133-RA 750..776 165..139 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 1886 CG7105-RB 202..624 439..17 2115 100 Minus
Proc-RA 1977 CG7105-RA 293..715 439..17 2115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7865904..7866154 17..267 1255 100 Plus
2L 23513712 2L 7870267..7870443 263..439 885 100 Plus
Blast to na_te.dros performed 2015-01-31 10:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 216..131 171 67.8 Minus

BS13467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:09 Download gff for BS13467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7105-PA 1..423 17..439 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:59 Download gff for BS13467.3prime
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..722 8..439 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:34 Download gff for BS13467.3prime
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 293..722 8..439 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:34 Download gff for BS13467.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7865897..7866149 8..262 98 <- Plus
2L 7870267..7870443 263..439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:59 Download gff for BS13467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7865897..7866149 8..262 98 <- Plus
arm_2L 7870267..7870443 263..439 100   Plus

BS13467.5prime Sequence

453 bp (453 high quality bases) assembled on 2006-10-13

> BS13467.5prime
GAAGTTATCAGTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATTAAAAGCTTTCTAG
ACC

BS13467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7105-PA 423 Proct-RA 1..423 17..439 2115 100 Plus
CG15478-PA 1659 CG15478-RA 561..587 291..317 135 100 Plus
CG17265-PA 1824 CG17265-RA 1524..1550 291..317 135 100 Plus
CG1770-PB 3546 HDAC4-RB 171..197 291..317 135 100 Plus
CG1770-PC 3600 HDAC4-RC 384..410 291..317 135 100 Plus
CG1770-PA 3747 HDAC4-RA 384..410 291..317 135 100 Plus
CG32133-PA 6885 CG32133-RA 750..776 291..317 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 1886 CG7105-RB 202..624 17..439 2115 100 Plus
Proc-RA 1977 CG7105-RA 293..715 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7865904..7866154 439..189 1255 100 Minus
2L 23513712 2L 7870267..7870443 193..17 885 100 Minus
Blast to na_te.dros performed 2015-01-31 10:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 240..325 171 67.8 Plus

BS13467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:09 Download gff for BS13467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7105-PA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:01 Download gff for BS13467.5prime
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..722 17..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:36 Download gff for BS13467.5prime
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 293..722 17..448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:36 Download gff for BS13467.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7870267..7870443 17..193 100   Minus
2L 7865897..7866149 194..448 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:01 Download gff for BS13467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7865897..7866149 194..448 98 <- Minus
arm_2L 7870267..7870443 17..193 100   Minus

BS13467.complete Sequence

455 bp assembled on 2006-11-01

GenBank Submission: FJ637465

> BS13467.complete
GAAGTTATCAGTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATTAAAAGCTTTCTAG
ACCAT

BS13467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 423 CG7105-PB 1..423 17..439 2115 100 Plus
Proc-RA 423 CG7105-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 1886 CG7105-RB 202..624 17..439 2115 100 Plus
Proc-RA 1977 CG7105-RA 293..715 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7865904..7866154 439..189 1255 100 Minus
2L 23513712 2L 7870267..7870443 193..17 885 100 Minus
Blast to na_te.dros performed 2014-11-27 14:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 240..325 171 67.8 Plus

BS13467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:06 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
Smr-RC 589..605 221..238 94 -> Plus
Smr-RC 751..767 239..255 100 == Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:43 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..722 17..448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:50 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..713 17..437 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:06 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
Smr-RC 1947..1963 221..238 94 -> Plus
Smr-RC 2109..2125 239..255 100 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:12 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 293..713 17..437 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:12 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7865906..7866149 194..437 100 <- Minus
2L 7870267..7870443 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:50 Download gff for BS13467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7865906..7866149 194..437 100 <- Minus
arm_2L 7870267..7870443 17..193 100   Minus

BS13467.pep Sequence

Translation from 16 to 438

> BS13467.pep
MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL
DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN
NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRY*

BS13467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-PB 140 CG7105-PB 1..140 1..140 749 100 Plus
Proc-PA 140 CG7105-PA 1..140 1..140 749 100 Plus