Clone Sequence Records
BS13468.complete Sequence
689 bp assembled on 2010-02-09
GenBank Submission: KX803052
> BS13468.complete
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCG
AAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTG
GCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCT
GGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCC
TCGCTTGGCAGTCCTGTGTTTAGAAGCTTTCTAGACCAT
BS13468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 657 | CG1599-PC | 1..657 | 17..673 | 3285 | 100 | Plus |
Vamp7-RA | 657 | CG1599-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 377..1034 | 16..673 | 3290 | 100 | Plus |
Vamp7-RA | 1090 | CG1599-RA | 319..976 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 449..221 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 9841846..9842051 | 221..16 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 9841194..9841349 | 673..518 | 780 | 100 | Minus |
2R | 25286936 | 2R | 9841408..9841476 | 517..449 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:22:46 has no hits.
BS13468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:43 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:33 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 331..987 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:55 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 320..976 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:02 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 331..987 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:08 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 320..976 | 17..673 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:08 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841194..9841349 | 518..673 | 100 | <- | Minus |
2R | 9841408..9841475 | 450..517 | 100 | <- | Minus |
2R | 9841540..9841768 | 221..449 | 100 | <- | Minus |
2R | 9841847..9842050 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:55 Download gff for
BS13468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5728699..5728854 | 518..673 | 100 | <- | Minus |
arm_2R | 5728913..5728980 | 450..517 | 100 | <- | Minus |
arm_2R | 5729045..5729273 | 221..449 | 100 | <- | Minus |
arm_2R | 5729352..5729555 | 17..220 | 100 | | Minus |
BS13468.3prime Sequence
637 bp (478 high quality bases) assembled on 2006-10-13
> BS13468.3prime
ATGGTCTAGAAAGCTTCTAAACACAGGACTGCCAAGCGAGGCCACCACAG
GCCATGCTCACAATCACGTAAACGATGAAGGTTATCACCAGACCCACCAC
CACGTAGACGCGGATGTTCTTCCAAAACATTTGACGAGCCAAATTTCGGG
AGGCCTTACGGAATGCAACGGAATTATTGCTCAAGTTTTCGGTCTTGTTG
ACGAGCAGCTCTAGTTTCTCGCCGCGATCCCGCAAGCTGTCAATATTCTT
AACCATAATGTCTTTAAGCTCGTCAATCTGACCATGTACTCGCGAAATGG
TGTCCACCTCCCGGGACTGACTGAAATAGACCATCTGCTGGGCCAGGATC
TTGGAGAACTCGGTGTTCATGGAGTAGGCGATGGCGGTGGCCACCTGTAG
GCCGTAAGTCTGGATAAACTTCTGCTTGATATCCGCCAAGAAGAGGAAGG
CCCGCGACCGTTCGAACTCGTTGTCGGTGATGCACATGTAGACCAGTTTG
TTCTCGCAGGTGTAGTGGATCAGGTAGTCTCCGTGTGTGTAGGTCATCTT
GTGGTTATGCACCCCGATCCGTCCGATTATGTGCTCCCGTCACTTCGGCA
AAGTTGCCGACGCACTCCCGCAAACTTCGCCAGGACT
BS13468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1599-PA | 657 | CG1599-RA | 43..657 | 633..17 | 3005 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 416..1034 | 637..17 | 3040 | 99.5 | Minus |
Vamp7-RA | 1090 | CG1599-RA | 358..976 | 637..17 | 3040 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 241..469 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 9841194..9841349 | 17..172 | 780 | 100 | Plus |
2R | 25286936 | 2R | 9841846..9842012 | 469..637 | 730 | 98.2 | Plus |
2R | 25286936 | 2R | 9841408..9841476 | 173..241 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:53:56 has no hits.
BS13468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:10 Download gff for
BS13468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-PA | 39..657 | 17..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:53 Download gff for
BS13468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 358..990 | 6..637 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:42 Download gff for
BS13468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 358..990 | 6..637 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:42 Download gff for
BS13468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841180..9841349 | 6..172 | 97 | <- | Plus |
2R | 9841408..9841475 | 173..240 | 100 | <- | Plus |
2R | 9841540..9841768 | 241..469 | 100 | <- | Plus |
2R | 9841847..9842012 | 470..637 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:53 Download gff for
BS13468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5729045..5729273 | 241..469 | 100 | <- | Plus |
arm_2R | 5729352..5729517 | 470..637 | 98 | | Plus |
arm_2R | 5728685..5728854 | 6..172 | 97 | <- | Plus |
arm_2R | 5728913..5728980 | 173..240 | 100 | <- | Plus |
BS13468.5prime Sequence
591 bp (493 high quality bases) assembled on 2006-10-13
> BS13468.5prime
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAAACTAGAGCTGCTCGTCAACAATACC
GAAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGACATTT
GGCTCGTCAAATGTTTTGGAAGAACATCCCCGTCTACGTGG
BS13468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1599-PA | 657 | CG1599-RA | 1..574 | 17..591 | 2760 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 377..951 | 16..591 | 2810 | 99.3 | Plus |
Vamp7-RA | 1090 | CG1599-RA | 319..893 | 16..591 | 2810 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 449..221 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 9841846..9842051 | 221..16 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 9841277..9841349 | 591..519 | 335 | 97.3 | Minus |
2R | 25286936 | 2R | 9841408..9841476 | 518..449 | 285 | 97.1 | Minus |
Blast to na_te.dros performed 2015-02-13 06:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 4528..4577 | 429..479 | 108 | 73.1 | Plus |
BS13468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:10 Download gff for
BS13468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-PA | 1..574 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:38:21 Download gff for
BS13468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..893 | 7..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:59 Download gff for
BS13468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..893 | 7..591 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:59 Download gff for
BS13468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841277..9841349 | 519..591 | 97 | <- | Minus |
2R | 9841408..9841475 | 450..518 | 97 | <- | Minus |
2R | 9841540..9841768 | 221..449 | 100 | <- | Minus |
2R | 9841847..9842062 | 7..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:38:21 Download gff for
BS13468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5728782..5728854 | 519..591 | 97 | <- | Minus |
arm_2R | 5728913..5728980 | 450..518 | 97 | <- | Minus |
arm_2R | 5729045..5729273 | 221..449 | 100 | <- | Minus |
arm_2R | 5729352..5729567 | 7..220 | 98 | | Minus |
BS13468.pep Sequence
Translation from 16 to 672
> BS13468.pep
MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY
LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY
SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR
GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI
VYVIVSMACGGLAWQSCV*
BS13468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-PC | 218 | CG1599-PC | 1..218 | 1..218 | 1118 | 100 | Plus |
Vamp7-PA | 218 | CG1599-PA | 1..218 | 1..218 | 1118 | 100 | Plus |
Sec22-PA | 211 | CG7359-PA | 43..207 | 35..202 | 191 | 28.4 | Plus |
Sec22-PB | 213 | CG7359-PB | 45..209 | 35..202 | 191 | 28.4 | Plus |