Clone BS13468 Report

Search the DGRC for BS13468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptVamp7-RA
Protein status:BS13468.pep: full length peptide match
Sequenced Size:689

Clone Sequence Records

BS13468.complete Sequence

689 bp assembled on 2010-02-09

GenBank Submission: KX803052

> BS13468.complete
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCG
AAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTG
GCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCT
GGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCC
TCGCTTGGCAGTCCTGTGTTTAGAAGCTTTCTAGACCAT

BS13468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 657 CG1599-PC 1..657 17..673 3285 100 Plus
Vamp7-RA 657 CG1599-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 377..1034 16..673 3290 100 Plus
Vamp7-RA 1090 CG1599-RA 319..976 16..673 3290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 449..221 1145 100 Minus
2R 25286936 2R 9841846..9842051 221..16 1030 100 Minus
2R 25286936 2R 9841194..9841349 673..518 780 100 Minus
2R 25286936 2R 9841408..9841476 517..449 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:22:46 has no hits.

BS13468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:43 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:33 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 331..987 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:55 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 320..976 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:02 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 331..987 17..673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:08 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 320..976 17..673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:08 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9841194..9841349 518..673 100 <- Minus
2R 9841408..9841475 450..517 100 <- Minus
2R 9841540..9841768 221..449 100 <- Minus
2R 9841847..9842050 17..220 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:55 Download gff for BS13468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728699..5728854 518..673 100 <- Minus
arm_2R 5728913..5728980 450..517 100 <- Minus
arm_2R 5729045..5729273 221..449 100 <- Minus
arm_2R 5729352..5729555 17..220 100   Minus

BS13468.3prime Sequence

637 bp (478 high quality bases) assembled on 2006-10-13

> BS13468.3prime
ATGGTCTAGAAAGCTTCTAAACACAGGACTGCCAAGCGAGGCCACCACAG
GCCATGCTCACAATCACGTAAACGATGAAGGTTATCACCAGACCCACCAC
CACGTAGACGCGGATGTTCTTCCAAAACATTTGACGAGCCAAATTTCGGG
AGGCCTTACGGAATGCAACGGAATTATTGCTCAAGTTTTCGGTCTTGTTG
ACGAGCAGCTCTAGTTTCTCGCCGCGATCCCGCAAGCTGTCAATATTCTT
AACCATAATGTCTTTAAGCTCGTCAATCTGACCATGTACTCGCGAAATGG
TGTCCACCTCCCGGGACTGACTGAAATAGACCATCTGCTGGGCCAGGATC
TTGGAGAACTCGGTGTTCATGGAGTAGGCGATGGCGGTGGCCACCTGTAG
GCCGTAAGTCTGGATAAACTTCTGCTTGATATCCGCCAAGAAGAGGAAGG
CCCGCGACCGTTCGAACTCGTTGTCGGTGATGCACATGTAGACCAGTTTG
TTCTCGCAGGTGTAGTGGATCAGGTAGTCTCCGTGTGTGTAGGTCATCTT
GTGGTTATGCACCCCGATCCGTCCGATTATGTGCTCCCGTCACTTCGGCA
AAGTTGCCGACGCACTCCCGCAAACTTCGCCAGGACT

BS13468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1599-PA 657 CG1599-RA 43..657 633..17 3005 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 416..1034 637..17 3040 99.5 Minus
Vamp7-RA 1090 CG1599-RA 358..976 637..17 3040 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 241..469 1145 100 Plus
2R 25286936 2R 9841194..9841349 17..172 780 100 Plus
2R 25286936 2R 9841846..9842012 469..637 730 98.2 Plus
2R 25286936 2R 9841408..9841476 173..241 345 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:53:56 has no hits.

BS13468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:10 Download gff for BS13468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-PA 39..657 17..637 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:53 Download gff for BS13468.3prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 358..990 6..637 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:42 Download gff for BS13468.3prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 358..990 6..637 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:42 Download gff for BS13468.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9841180..9841349 6..172 97 <- Plus
2R 9841408..9841475 173..240 100 <- Plus
2R 9841540..9841768 241..469 100 <- Plus
2R 9841847..9842012 470..637 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:53 Download gff for BS13468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5729045..5729273 241..469 100 <- Plus
arm_2R 5729352..5729517 470..637 98   Plus
arm_2R 5728685..5728854 6..172 97 <- Plus
arm_2R 5728913..5728980 173..240 100 <- Plus

BS13468.5prime Sequence

591 bp (493 high quality bases) assembled on 2006-10-13

> BS13468.5prime
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAAACTAGAGCTGCTCGTCAACAATACC
GAAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGACATTT
GGCTCGTCAAATGTTTTGGAAGAACATCCCCGTCTACGTGG

BS13468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1599-PA 657 CG1599-RA 1..574 17..591 2760 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 377..951 16..591 2810 99.3 Plus
Vamp7-RA 1090 CG1599-RA 319..893 16..591 2810 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 449..221 1145 100 Minus
2R 25286936 2R 9841846..9842051 221..16 1030 100 Minus
2R 25286936 2R 9841277..9841349 591..519 335 97.3 Minus
2R 25286936 2R 9841408..9841476 518..449 285 97.1 Minus
Blast to na_te.dros performed 2015-02-13 06:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 4528..4577 429..479 108 73.1 Plus

BS13468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:10 Download gff for BS13468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-PA 1..574 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:38:21 Download gff for BS13468.5prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..893 7..591 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:59 Download gff for BS13468.5prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..893 7..591 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:59 Download gff for BS13468.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9841277..9841349 519..591 97 <- Minus
2R 9841408..9841475 450..518 97 <- Minus
2R 9841540..9841768 221..449 100 <- Minus
2R 9841847..9842062 7..220 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:38:21 Download gff for BS13468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728782..5728854 519..591 97 <- Minus
arm_2R 5728913..5728980 450..518 97 <- Minus
arm_2R 5729045..5729273 221..449 100 <- Minus
arm_2R 5729352..5729567 7..220 98   Minus

BS13468.pep Sequence

Translation from 16 to 672

> BS13468.pep
MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY
LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY
SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR
GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI
VYVIVSMACGGLAWQSCV*

BS13468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-PC 218 CG1599-PC 1..218 1..218 1118 100 Plus
Vamp7-PA 218 CG1599-PA 1..218 1..218 1118 100 Plus
Sec22-PA 211 CG7359-PA 43..207 35..202 191 28.4 Plus
Sec22-PB 213 CG7359-PB 45..209 35..202 191 28.4 Plus