Clone Sequence Records
BS13469.3prime Sequence
426 bp (426 high quality bases) assembled on 2006-10-13
> BS13469.3prime
ATGGTCTAGAAAGCTTTCACTTGGCCTTGGAGGCGCTGGGCAGGGCCATC
AGCATGTTCTCAATGGTGTTCGTGCGCAGCTCCTGGTTGTCGCCCACCTC
CGCAAAGAATCGCCGGATGTTCCGGATGATGCGATGGTGGGGCAGCTCCT
GCTCCTCCTCGTCGGACGACTCGTCCTCGCTGAGCTCAATGACCACCTCG
TTGCCCTCGTCGTCCAGCTGCGTTTTCGTTTTCTTTTTCTTGGGCTTCGG
CGGCTCCGGAGGGTCTTGCCACATTATCGGATGCCAACAACGCGAGCCAA
GCAGGGGGGTTGGGGTGAATTCACTGGGCGGCGGCAAAGGCTTTGGAACC
CGCATCACAATCGACTTCTCCTCCCCAGCCTCAAACTGGCCCATGGGATC
GTCCTCCTCCATGTCGACTGATAACT
BS13469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17041-PA | 396 | CG17041-RA | 1..396 | 412..17 | 1980 | 100 | Minus |
CG17041-PB | 396 | CG17041-RB | 1..396 | 412..17 | 1980 | 100 | Minus |
CG17041-PC | 396 | CG17041-RC | 1..396 | 412..17 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 1466 | CG42319-RD | 886..1283 | 414..17 | 1990 | 100 | Minus |
CG42319-RC | 890 | CG42319-RC | 310..707 | 414..17 | 1990 | 100 | Minus |
CG42319-RB | 1043 | CG42319-RB | 250..647 | 414..17 | 1990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13263492..13263666 | 322..148 | 875 | 100 | Minus |
2R | 25286936 | 2R | 13263797..13263931 | 151..17 | 675 | 100 | Minus |
2R | 25286936 | 2R | 13262906..13262997 | 413..322 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:11:20 has no hits.
BS13469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:10 Download gff for
BS13469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17041-PC | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:34 Download gff for
BS13469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..657 | 9..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:07 Download gff for
BS13469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..657 | 9..414 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:07 Download gff for
BS13469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13262906..13262997 | 322..413 | 100 | -> | Minus |
2R | 13263493..13263665 | 149..321 | 100 | -> | Minus |
2R | 13263800..13263941 | 9..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:34 Download gff for
BS13469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9150411..9150502 | 322..413 | 100 | -> | Minus |
arm_2R | 9150998..9151170 | 149..321 | 100 | -> | Minus |
arm_2R | 9151305..9151446 | 9..148 | 97 | | Minus |
BS13469.5prime Sequence
426 bp (426 high quality bases) assembled on 2006-10-13
> BS13469.5prime
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGTGAAAGCTTTCTAGACC
BS13469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17041-PA | 396 | CG17041-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
CG17041-PB | 396 | CG17041-RB | 1..396 | 17..412 | 1980 | 100 | Plus |
CG17041-PC | 396 | CG17041-RC | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 1466 | CG42319-RD | 886..1283 | 15..412 | 1990 | 100 | Plus |
CG42319-RC | 890 | CG42319-RC | 310..707 | 15..412 | 1990 | 100 | Plus |
CG42319-RB | 1043 | CG42319-RB | 250..647 | 15..412 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13263492..13263666 | 107..281 | 875 | 100 | Plus |
2R | 25286936 | 2R | 13263797..13263931 | 278..412 | 675 | 100 | Plus |
2R | 25286936 | 2R | 13262906..13262997 | 16..107 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:23:41 has no hits.
BS13469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:11 Download gff for
BS13469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17041-PC | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:49 Download gff for
BS13469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..657 | 15..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:57 Download gff for
BS13469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..657 | 15..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:57 Download gff for
BS13469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13263800..13263941 | 281..420 | 97 | | Plus |
2R | 13262906..13262997 | 16..107 | 100 | -> | Plus |
2R | 13263493..13263665 | 108..280 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:49 Download gff for
BS13469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9150411..9150502 | 16..107 | 100 | -> | Plus |
arm_2R | 9150998..9151170 | 108..280 | 100 | -> | Plus |
arm_2R | 9151305..9151446 | 281..420 | 97 | | Plus |
BS13469.complete Sequence
428 bp assembled on 2006-11-01
GenBank Submission: FJ637466
> BS13469.complete
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGTGAAAGCTTTCTAGACCAT
BS13469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 756 | CG42319-PD | 359..756 | 15..412 | 1990 | 100 | Plus |
CG42319-RC | 396 | CG42319-PC | 1..396 | 17..412 | 1980 | 100 | Plus |
CG42319-RB | 396 | CG42319-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 1466 | CG42319-RD | 886..1283 | 15..412 | 1990 | 100 | Plus |
CG42319-RC | 890 | CG42319-RC | 310..707 | 15..412 | 1990 | 100 | Plus |
CG42319-RB | 1043 | CG42319-RB | 250..647 | 15..412 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13263492..13263666 | 107..281 | 875 | 100 | Plus |
2R | 25286936 | 2R | 13263797..13263931 | 278..412 | 675 | 100 | Plus |
2R | 25286936 | 2R | 13262906..13262997 | 16..107 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:56 has no hits.
BS13469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:07 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RD | 359..756 | 15..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:45 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RC | 266..673 | 15..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:18 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 252..646 | 17..411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:07 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RC | 266..673 | 15..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:14 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 252..646 | 17..411 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:14 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13262907..13262997 | 17..107 | 100 | -> | Plus |
2R | 13263493..13263665 | 108..280 | 100 | -> | Plus |
2R | 13263800..13263930 | 281..411 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:18 Download gff for
BS13469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9151305..9151435 | 281..411 | 100 | | Plus |
arm_2R | 9150412..9150502 | 17..107 | 100 | -> | Plus |
arm_2R | 9150998..9151170 | 108..280 | 100 | -> | Plus |
BS13469.pep Sequence
Translation from 16 to 411
> BS13469.pep
MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSEFTPTPLLGSRCWHPIMWQD
PPEPPKPKKKKTKTQLDDEGNEVVIELSEDESSDEEEQELPHHRIIRNIR
RFFAEVGDNQELRTNTIENMLMALPSASKAK*
BS13469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-PC | 131 | CG17041-PC | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PB | 131 | CG17041-PB | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PA | 131 | CG17041-PA | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PD | 251 | CG17041-PD | 121..251 | 1..131 | 700 | 100 | Plus |
CG42319-PF | 332 | CG42319-PF | 1..30 | 1..30 | 160 | 100 | Plus |