Clone BS13469 Report

Search the DGRC for BS13469

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG42319-RA
Protein status:BS13469.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13469.3prime Sequence

426 bp (426 high quality bases) assembled on 2006-10-13

> BS13469.3prime
ATGGTCTAGAAAGCTTTCACTTGGCCTTGGAGGCGCTGGGCAGGGCCATC
AGCATGTTCTCAATGGTGTTCGTGCGCAGCTCCTGGTTGTCGCCCACCTC
CGCAAAGAATCGCCGGATGTTCCGGATGATGCGATGGTGGGGCAGCTCCT
GCTCCTCCTCGTCGGACGACTCGTCCTCGCTGAGCTCAATGACCACCTCG
TTGCCCTCGTCGTCCAGCTGCGTTTTCGTTTTCTTTTTCTTGGGCTTCGG
CGGCTCCGGAGGGTCTTGCCACATTATCGGATGCCAACAACGCGAGCCAA
GCAGGGGGGTTGGGGTGAATTCACTGGGCGGCGGCAAAGGCTTTGGAACC
CGCATCACAATCGACTTCTCCTCCCCAGCCTCAAACTGGCCCATGGGATC
GTCCTCCTCCATGTCGACTGATAACT

BS13469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17041-PA 396 CG17041-RA 1..396 412..17 1980 100 Minus
CG17041-PB 396 CG17041-RB 1..396 412..17 1980 100 Minus
CG17041-PC 396 CG17041-RC 1..396 412..17 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 1466 CG42319-RD 886..1283 414..17 1990 100 Minus
CG42319-RC 890 CG42319-RC 310..707 414..17 1990 100 Minus
CG42319-RB 1043 CG42319-RB 250..647 414..17 1990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13263492..13263666 322..148 875 100 Minus
2R 25286936 2R 13263797..13263931 151..17 675 100 Minus
2R 25286936 2R 13262906..13262997 413..322 460 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:11:20 has no hits.

BS13469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:10 Download gff for BS13469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17041-PC 1..396 17..412 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:34 Download gff for BS13469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..657 9..414 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:07 Download gff for BS13469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..657 9..414 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:07 Download gff for BS13469.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13262906..13262997 322..413 100 -> Minus
2R 13263493..13263665 149..321 100 -> Minus
2R 13263800..13263941 9..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:34 Download gff for BS13469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9150411..9150502 322..413 100 -> Minus
arm_2R 9150998..9151170 149..321 100 -> Minus
arm_2R 9151305..9151446 9..148 97   Minus

BS13469.5prime Sequence

426 bp (426 high quality bases) assembled on 2006-10-13

> BS13469.5prime
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGTGAAAGCTTTCTAGACC

BS13469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17041-PA 396 CG17041-RA 1..396 17..412 1980 100 Plus
CG17041-PB 396 CG17041-RB 1..396 17..412 1980 100 Plus
CG17041-PC 396 CG17041-RC 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 1466 CG42319-RD 886..1283 15..412 1990 100 Plus
CG42319-RC 890 CG42319-RC 310..707 15..412 1990 100 Plus
CG42319-RB 1043 CG42319-RB 250..647 15..412 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13263492..13263666 107..281 875 100 Plus
2R 25286936 2R 13263797..13263931 278..412 675 100 Plus
2R 25286936 2R 13262906..13262997 16..107 460 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:23:41 has no hits.

BS13469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:11 Download gff for BS13469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17041-PC 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:49 Download gff for BS13469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..657 15..420 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:57 Download gff for BS13469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..657 15..420 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:57 Download gff for BS13469.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13263800..13263941 281..420 97   Plus
2R 13262906..13262997 16..107 100 -> Plus
2R 13263493..13263665 108..280 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:49 Download gff for BS13469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9150411..9150502 16..107 100 -> Plus
arm_2R 9150998..9151170 108..280 100 -> Plus
arm_2R 9151305..9151446 281..420 97   Plus

BS13469.complete Sequence

428 bp assembled on 2006-11-01

GenBank Submission: FJ637466

> BS13469.complete
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGTGAAAGCTTTCTAGACCAT

BS13469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 756 CG42319-PD 359..756 15..412 1990 100 Plus
CG42319-RC 396 CG42319-PC 1..396 17..412 1980 100 Plus
CG42319-RB 396 CG42319-PB 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 1466 CG42319-RD 886..1283 15..412 1990 100 Plus
CG42319-RC 890 CG42319-RC 310..707 15..412 1990 100 Plus
CG42319-RB 1043 CG42319-RB 250..647 15..412 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13263492..13263666 107..281 875 100 Plus
2R 25286936 2R 13263797..13263931 278..412 675 100 Plus
2R 25286936 2R 13262906..13262997 16..107 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:34:56 has no hits.

BS13469.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:07 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RD 359..756 15..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:45 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RC 266..673 15..420 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:18 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 252..646 17..411 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:07 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RC 266..673 15..420 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:14 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 252..646 17..411 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:14 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13262907..13262997 17..107 100 -> Plus
2R 13263493..13263665 108..280 100 -> Plus
2R 13263800..13263930 281..411 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:18 Download gff for BS13469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9151305..9151435 281..411 100   Plus
arm_2R 9150412..9150502 17..107 100 -> Plus
arm_2R 9150998..9151170 108..280 100 -> Plus

BS13469.pep Sequence

Translation from 16 to 411

> BS13469.pep
MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSEFTPTPLLGSRCWHPIMWQD
PPEPPKPKKKKTKTQLDDEGNEVVIELSEDESSDEEEQELPHHRIIRNIR
RFFAEVGDNQELRTNTIENMLMALPSASKAK*

BS13469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-PC 131 CG17041-PC 1..131 1..131 700 100 Plus
CG42319-PB 131 CG17041-PB 1..131 1..131 700 100 Plus
CG42319-PA 131 CG17041-PA 1..131 1..131 700 100 Plus
CG42319-PD 251 CG17041-PD 121..251 1..131 700 100 Plus
CG42319-PF 332 CG42319-PF 1..30 1..30 160 100 Plus