Clone Sequence Records
BS13470.3prime Sequence
327 bp (327 high quality bases) assembled on 2006-10-13
> BS13470.3prime
ATGGTCTAGAAAGCTTTTAATAGGGATCCACGTTGCAGTGCTGACATCTG
CCATTGACGATGGTATTACCACCCCTCCGGTAAATGGTGCCACCTCCACC
GCCACTACCGTCATTTCCACGGGAAATGACCACATTACCATCGCCAGGGG
ATGAGGAGAAGCTGCGGTACTGCTGGCCATCCAGGTAGACGGGTTCACCA
TTCGGATTGGGACAAGTCAGACAGACGCCATTCACCACCACTGTGCTGGG
ATGAGCGCCGATCAGAGTCGGAATTAAAGCCAACGGGAGCAGCACACACG
TCAGGTACTTCATGTCGACTGATAACT
BS13470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-PA | 297 | CG5791-RA | 1..297 | 313..17 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-RB | 629 | CG5791-RB | 129..431 | 313..11 | 1500 | 99.7 | Minus |
CG5791-RC | 1193 | CG5791-RC | 21..323 | 313..11 | 1500 | 99.7 | Minus |
CG5791-RA | 350 | CG5791-RA | 22..324 | 313..11 | 1500 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22087429..22087631 | 213..11 | 1000 | 99.5 | Minus |
3R | 32079331 | 3R | 22087203..22087260 | 313..256 | 290 | 100 | Minus |
3R | 32079331 | 3R | 22087317..22087361 | 256..212 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:45:17 has no hits.
BS13470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:11 Download gff for
BS13470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-PA | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:38 Download gff for
BS13470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 71..377 | 4..313 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:58 Download gff for
BS13470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 22..328 | 4..313 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:58 Download gff for
BS13470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22087203..22087260 | 256..313 | 100 | -> | Minus |
3R | 22087318..22087359 | 214..255 | 100 | -> | Minus |
3R | 22087429..22087635 | 4..213 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:38 Download gff for
BS13470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17912925..17912982 | 256..313 | 100 | -> | Minus |
arm_3R | 17913040..17913081 | 214..255 | 100 | -> | Minus |
arm_3R | 17913151..17913357 | 4..213 | 97 | | Minus |
BS13470.5prime Sequence
327 bp (327 high quality bases) assembled on 2006-10-13
> BS13470.5prime
GAAGTTATCAGTCGACATGAAGTACCTGACGTGTGTGCTGCTCCCGTTGG
CTTTAATTCCGACTCTGATCGGCGCTCATCCCAGCACAGTGGTGGTGAAT
GGCGTCTGTCTGACTTGTCCCAATCCGAATGGTGAACCCGTCTACCTGGA
TGGCCAGCAGTACCGCAGCTTCTCCTCATCCCCTGGCGATGGTAATGTGG
TCATTTCCCGTGGAAATGACGGTAGTGGCGGTGGAGGTGGCACCATTTAC
CGGAGGGGTGGTAATACCATCGTCAATGGCAGATGTCAGCACTGCAACGT
GGATCCCTATTAAAAGCTTTCTAGACC
BS13470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-PA | 297 | CG5791-RA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-RB | 629 | CG5791-RB | 129..431 | 17..319 | 1500 | 99.7 | Plus |
CG5791-RC | 1193 | CG5791-RC | 21..323 | 17..319 | 1500 | 99.7 | Plus |
CG5791-RA | 350 | CG5791-RA | 22..324 | 17..319 | 1500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22087429..22087631 | 117..319 | 1000 | 99.5 | Plus |
3R | 32079331 | 3R | 22087203..22087260 | 17..74 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22087317..22087361 | 74..118 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:33:09 has no hits.
BS13470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:12 Download gff for
BS13470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-PA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:41 Download gff for
BS13470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 71..377 | 17..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:50 Download gff for
BS13470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 22..328 | 17..326 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:50 Download gff for
BS13470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22087203..22087260 | 17..74 | 100 | -> | Plus |
3R | 22087318..22087359 | 75..116 | 100 | -> | Plus |
3R | 22087429..22087635 | 117..326 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:41 Download gff for
BS13470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17912925..17912982 | 17..74 | 100 | -> | Plus |
arm_3R | 17913040..17913081 | 75..116 | 100 | -> | Plus |
arm_3R | 17913151..17913357 | 117..326 | 97 | | Plus |
BS13470.complete Sequence
329 bp assembled on 2006-11-01
GenBank Submission: FJ637467
> BS13470.complete
GAAGTTATCAGTCGACATGAAGTACCTGACGTGTGTGCTGCTCCCGTTGG
CTTTAATTCCGACTCTGATCGGCGCTCATCCCAGCACAGTGGTGGTGAAT
GGCGTCTGTCTGACTTGTCCCAATCCGAATGGTGAACCCGTCTACCTGGA
TGGCCAGCAGTACCGCAGCTTCTCCTCATCCCCTGGCGATGGTAATGTGG
TCATTTCCCGTGGAAATGACGGTAGTGGCGGTGGAGGTGGCACCATTTAC
CGGAGGGGTGGTAATACCATCGTCAATGGCAGATGTCAGCACTGCAACGT
GGATCCCTATTAAAAGCTTTCTAGACCAT
BS13470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-RB | 297 | CG5791-PB | 1..297 | 17..313 | 1485 | 100 | Plus |
CG5791-RC | 297 | CG5791-PC | 1..297 | 17..313 | 1485 | 100 | Plus |
CG5791-RA | 297 | CG5791-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-RB | 629 | CG5791-RB | 129..431 | 17..319 | 1500 | 99.7 | Plus |
CG5791-RC | 1193 | CG5791-RC | 21..323 | 17..319 | 1500 | 99.7 | Plus |
CG5791-RA | 350 | CG5791-RA | 22..324 | 17..319 | 1500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22087429..22087631 | 117..319 | 1000 | 99.5 | Plus |
3R | 32079331 | 3R | 22087203..22087260 | 17..74 | 290 | 100 | Plus |
3R | 32079331 | 3R | 22087317..22087361 | 74..118 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:24:13 has no hits.
BS13470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:17 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:27 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 71..377 | 17..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:18 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 71..365 | 17..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:17 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 71..377 | 17..326 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:42 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5791-RA | 22..316 | 17..311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:42 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22087203..22087260 | 17..74 | 100 | -> | Plus |
3R | 22087318..22087359 | 75..116 | 100 | -> | Plus |
3R | 22087429..22087623 | 117..311 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:18 Download gff for
BS13470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17912925..17912982 | 17..74 | 100 | -> | Plus |
arm_3R | 17913040..17913081 | 75..116 | 100 | -> | Plus |
arm_3R | 17913151..17913345 | 117..311 | 100 | | Plus |
BS13470.pep Sequence
Translation from 16 to 312
> BS13470.pep
MKYLTCVLLPLALIPTLIGAHPSTVVVNGVCLTCPNPNGEPVYLDGQQYR
SFSSSPGDGNVVISRGNDGSGGGGGTIYRRGGNTIVNGRCQHCNVDPY*
BS13470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5791-PB | 98 | CG5791-PB | 1..98 | 1..98 | 539 | 100 | Plus |
CG5791-PC | 98 | CG5791-PC | 1..98 | 1..98 | 539 | 100 | Plus |
CG5791-PA | 98 | CG5791-PA | 1..98 | 1..98 | 539 | 100 | Plus |