Clone Sequence Records
BS13471.3prime Sequence
764 bp (676 high quality bases) assembled on 2006-10-13
> BS13471.3prime
ATGGTCTAGAAAGCTTCTAATGGGGACCGCCGCCACTGGGCTCCTGCTGC
TTGAGCGTCTTGAGGTTCTTTTCGAAGCGCTCAAACTCGCTCTCGATCAT
CCTGTCCGCCTCGTCGAAGACCTGCTCAACGGACTCCACCTCCGGTATGT
AGAATTGCAGCATGTTCTGCACTCCGTTCTTCAGCGTCACAATGGAGCTG
GGACAGGAGGAGCAGGAGCCTTGCATCTTTAGCTTGACCACGCCGCCCTC
GTAGCCCATGAAGACGATGTCGCCGCCGTCCTCCTGGACGGTGGGTCGGA
TGCGCGTGTCCAGCAGCTCCTTGATCATCATTACCGTCTCGTCGTCGTCC
TCGAGGATCTCGGTGTCCGCATTGGGCTGGGCATCGTTGAGAACTGGTAA
GCCGCTGGCAAAGAAGTCCATTATGACGGCAAACACCTCTGGCTTAATCA
GGCTCCACTCGGCGCCCTCCTGCTTCGAGATGGTGACGAAGTCGGCGCCA
AAGAACACGCCCTTAACGCCCTCCACGCGGAACAGCAATTTGGCCAAAGG
ACTGTTGTGGGCGGTGGTTCCGTTGGGGAAGTCGTACGTGTTCCCCTTTC
CCAGGACGTCCACGCCGGGCAGGAACTTCAAGCTCTCCGGATTCGGAGTG
TCCTGCGTCTGGATGAACATGCTCCTCCTGCACGCCACCGGCATCCGCAA
CTCTAGCCGCCCGCATCCCACTGAGTGACCACATCCCGATTCCTGGTGAG
CCGGTATGCGATGG
BS13471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32500-PA | 852 | CG32500-RA | 105..852 | 764..17 | 3715 | 99.8 | Minus |
CG33502-PA | 852 | CG33502-RA | 105..852 | 764..17 | 3715 | 99.8 | Minus |
CG32857-PA | 852 | CG32857-RA | 105..852 | 764..17 | 3715 | 99.8 | Minus |
CG32500-PB | 333 | CG32500-RB | 105..325 | 764..544 | 1080 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33502-RA | 1060 | CG33502-RA | 162..910 | 764..16 | 3730 | 99.9 | Minus |
CG32857-RA | 1059 | CG32857-RA | 161..909 | 764..16 | 3730 | 99.9 | Minus |
CG32500-RA | 1084 | CG32500-RA | 186..934 | 764..16 | 3730 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21609507..21610035 | 16..544 | 2645 | 100 | Plus |
X | 23542271 | X | 21615599..21616127 | 16..544 | 2645 | 100 | Plus |
X | 23542271 | X | 21621691..21622219 | 16..544 | 2645 | 100 | Plus |
X | 23542271 | X | 21611086..21611306 | 544..764 | 1090 | 99.5 | Plus |
X | 23542271 | X | 21617178..21617398 | 544..764 | 1090 | 99.5 | Plus |
X | 23542271 | X | 21623286..21623506 | 544..764 | 1090 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:45:31 has no hits.
BS13471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:12 Download gff for
BS13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32857-PA | 105..852 | 17..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:40 Download gff for
BS13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32500-RA | 186..941 | 9..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:00 Download gff for
BS13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32500-RA | 186..941 | 9..764 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:00 Download gff for
BS13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21609500..21610034 | 9..543 | 99 | <- | Plus |
X | 21611086..21611306 | 544..764 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:40 Download gff for
BS13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21480527..21481061 | 9..543 | 99 | <- | Plus |
arm_X | 21482113..21482333 | 544..764 | 99 | | Plus |
BS13471.5prime Sequence
689 bp (630 high quality bases) assembled on 2006-10-13
> BS13471.5prime
GAAGTTATCAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATA
CGCTGCGAAACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAG
GGCATCTCCAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGG
ATGTGGTCACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGG
CGTGCAGGAGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAG
AGCTTGAAGTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTA
CGACTTCCCCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGC
TGTTCCGCGTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTC
ACCATCTCGAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGT
GTTTGCCGTCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACG
ATGCCCAGCCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACG
GTAATGATGATCAAGGAGCTGCTGGACACGCGCATCCGACCCACCGTCCA
GGAGGACGGCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTCA
AGCTAAAGATGCAAGGCTCCTGCTCCTCCTGTCCCAGCT
BS13471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32500-PA | 852 | CG32500-RA | 1..673 | 17..689 | 3365 | 100 | Plus |
CG33502-PA | 852 | CG33502-RA | 1..673 | 17..689 | 3365 | 100 | Plus |
CG32857-PA | 852 | CG32857-RA | 1..673 | 17..689 | 3365 | 100 | Plus |
CG32500-PB | 333 | CG32500-RB | 1..325 | 17..341 | 1625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33502-RA | 1060 | CG33502-RA | 58..730 | 17..689 | 3365 | 100 | Plus |
CG32857-RA | 1059 | CG32857-RA | 57..729 | 17..689 | 3365 | 100 | Plus |
CG32500-RA | 1084 | CG32500-RA | 82..754 | 17..689 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21609687..21610035 | 689..341 | 1745 | 100 | Minus |
X | 23542271 | X | 21615779..21616127 | 689..341 | 1745 | 100 | Minus |
X | 23542271 | X | 21621871..21622219 | 689..341 | 1745 | 100 | Minus |
X | 23542271 | X | 21611086..21611342 | 341..85 | 1285 | 100 | Minus |
X | 23542271 | X | 21617178..21617434 | 341..85 | 1285 | 100 | Minus |
X | 23542271 | X | 21623286..21623542 | 341..85 | 1285 | 100 | Minus |
X | 23542271 | X | 21611401..21611469 | 85..17 | 345 | 100 | Minus |
X | 23542271 | X | 21617493..21617561 | 85..17 | 345 | 100 | Minus |
X | 23542271 | X | 21623601..21623669 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:01 has no hits.
BS13471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:13 Download gff for
BS13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32857-PA | 1..673 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:16 Download gff for
BS13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32500-RA | 82..754 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:25 Download gff for
BS13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32500-RA | 82..754 | 17..689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:25 Download gff for
BS13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21611086..21611342 | 85..341 | 100 | <- | Minus |
X | 21609687..21610034 | 342..689 | 100 | <- | Minus |
X | 21611402..21611469 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:16 Download gff for
BS13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21480714..21481061 | 342..689 | 100 | <- | Minus |
arm_X | 21482113..21482369 | 85..341 | 100 | <- | Minus |
arm_X | 21482429..21482496 | 17..84 | 100 | | Minus |
BS13471.complete Sequence
884 bp assembled on 2006-11-01
GenBank Submission: FJ637468
> BS13471.complete
GAAGTTATCAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATA
CGCTGCGAAACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAG
GGCATCTCCAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGG
ATGTGGTCACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGG
CGTGCAGGAGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAG
AGCTTGAAGTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTA
CGACTTCCCCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGC
TGTTCCGCGTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTC
ACCATCTCGAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGT
GTTTGCCGTCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACG
ATGCCCAGCCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACG
GTAATGATGATCAAGGAGCTGCTGGACACGCGCATCCGACCCACCGTCCA
GGAGGACGGCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTCA
AGCTAAAGATGCAAGGCTCCTGCTCCTCCTGTCCCAGCTCCATTGTGACG
CTGAAGAACGGAGTGCAGAACATGCTGCAATTCTACATACCGGAGGTGGA
GTCCGTTGAGCAGGTCTTCGACGAGGCGGACAGGATGATCGAGAGCGAGT
TTGAGCGCTTCGAAAAGAACCTCAAGACGCTCAAGCAGCAGGAGCCCAGT
GGCGGCGGTCCCCATTAGAAGCTTTCTAGACCAT
BS13471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33502-RA | 852 | CG33502-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG32857-RA | 852 | CG32857-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG32500-RA | 852 | CG32500-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33502-RA | 1060 | CG33502-RA | 58..910 | 17..869 | 4265 | 100 | Plus |
CG32857-RA | 1059 | CG32857-RA | 57..909 | 17..869 | 4265 | 100 | Plus |
CG32500-RA | 1084 | CG32500-RA | 82..934 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21609507..21610035 | 869..341 | 2645 | 100 | Minus |
X | 23542271 | X | 21615599..21616127 | 869..341 | 2645 | 100 | Minus |
X | 23542271 | X | 21621691..21622219 | 869..341 | 2645 | 100 | Minus |
X | 23542271 | X | 21611086..21611342 | 341..85 | 1285 | 100 | Minus |
X | 23542271 | X | 21623286..21623542 | 341..85 | 1285 | 100 | Minus |
X | 23542271 | X | 21617178..21617434 | 341..85 | 1285 | 100 | Minus |
X | 23542271 | X | 21611401..21611469 | 85..17 | 345 | 100 | Minus |
X | 23542271 | X | 21617493..21617561 | 85..17 | 345 | 100 | Minus |
X | 23542271 | X | 21623601..21623669 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:39:45 has no hits.
BS13471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:51 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33502-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:24 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32857-RA | 36..895 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:45 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32500-RA | 82..933 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:51 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32857-RA | 36..895 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:15 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32500-RA | 82..933 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:15 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21609508..21610034 | 342..868 | 100 | <- | Minus |
X | 21611086..21611342 | 85..341 | 100 | <- | Minus |
X | 21611402..21611469 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:45 Download gff for
BS13471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21480535..21481061 | 342..868 | 100 | <- | Minus |
arm_X | 21482113..21482369 | 85..341 | 100 | <- | Minus |
arm_X | 21482429..21482496 | 17..84 | 100 | | Minus |
BS13471.pep Sequence
Translation from 16 to 867
> BS13471.pep
MSKFLSQAALNTLRNTRLGSRQLVRSFKGISNTRNHRIPAHQESGCGHSV
GCGLLELRMPVACRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNG
TTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIM
DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGD
IVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQV
FDEADRMIESEFERFEKNLKTLKQQEPSGGGPH*
BS13471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33502-PA | 283 | CG33502-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
CG32857-PA | 283 | CG32857-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
CG32500-PA | 283 | CG32500-PA | 1..283 | 1..283 | 1468 | 100 | Plus |