Clone BS13471 Report

Search the DGRC for BS13471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG32500-RA
Protein status:BS13471.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13471.3prime Sequence

764 bp (676 high quality bases) assembled on 2006-10-13

> BS13471.3prime
ATGGTCTAGAAAGCTTCTAATGGGGACCGCCGCCACTGGGCTCCTGCTGC
TTGAGCGTCTTGAGGTTCTTTTCGAAGCGCTCAAACTCGCTCTCGATCAT
CCTGTCCGCCTCGTCGAAGACCTGCTCAACGGACTCCACCTCCGGTATGT
AGAATTGCAGCATGTTCTGCACTCCGTTCTTCAGCGTCACAATGGAGCTG
GGACAGGAGGAGCAGGAGCCTTGCATCTTTAGCTTGACCACGCCGCCCTC
GTAGCCCATGAAGACGATGTCGCCGCCGTCCTCCTGGACGGTGGGTCGGA
TGCGCGTGTCCAGCAGCTCCTTGATCATCATTACCGTCTCGTCGTCGTCC
TCGAGGATCTCGGTGTCCGCATTGGGCTGGGCATCGTTGAGAACTGGTAA
GCCGCTGGCAAAGAAGTCCATTATGACGGCAAACACCTCTGGCTTAATCA
GGCTCCACTCGGCGCCCTCCTGCTTCGAGATGGTGACGAAGTCGGCGCCA
AAGAACACGCCCTTAACGCCCTCCACGCGGAACAGCAATTTGGCCAAAGG
ACTGTTGTGGGCGGTGGTTCCGTTGGGGAAGTCGTACGTGTTCCCCTTTC
CCAGGACGTCCACGCCGGGCAGGAACTTCAAGCTCTCCGGATTCGGAGTG
TCCTGCGTCTGGATGAACATGCTCCTCCTGCACGCCACCGGCATCCGCAA
CTCTAGCCGCCCGCATCCCACTGAGTGACCACATCCCGATTCCTGGTGAG
CCGGTATGCGATGG

BS13471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32500-PA 852 CG32500-RA 105..852 764..17 3715 99.8 Minus
CG33502-PA 852 CG33502-RA 105..852 764..17 3715 99.8 Minus
CG32857-PA 852 CG32857-RA 105..852 764..17 3715 99.8 Minus
CG32500-PB 333 CG32500-RB 105..325 764..544 1080 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG33502-RA 1060 CG33502-RA 162..910 764..16 3730 99.9 Minus
CG32857-RA 1059 CG32857-RA 161..909 764..16 3730 99.9 Minus
CG32500-RA 1084 CG32500-RA 186..934 764..16 3730 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21609507..21610035 16..544 2645 100 Plus
X 23542271 X 21615599..21616127 16..544 2645 100 Plus
X 23542271 X 21621691..21622219 16..544 2645 100 Plus
X 23542271 X 21611086..21611306 544..764 1090 99.5 Plus
X 23542271 X 21617178..21617398 544..764 1090 99.5 Plus
X 23542271 X 21623286..21623506 544..764 1090 99.5 Plus
Blast to na_te.dros performed on 2015-02-08 11:45:31 has no hits.

BS13471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:12 Download gff for BS13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32857-PA 105..852 17..764 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:40 Download gff for BS13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32500-RA 186..941 9..764 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:00 Download gff for BS13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32500-RA 186..941 9..764 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:00 Download gff for BS13471.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21609500..21610034 9..543 99 <- Plus
X 21611086..21611306 544..764 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:40 Download gff for BS13471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21480527..21481061 9..543 99 <- Plus
arm_X 21482113..21482333 544..764 99   Plus

BS13471.5prime Sequence

689 bp (630 high quality bases) assembled on 2006-10-13

> BS13471.5prime
GAAGTTATCAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATA
CGCTGCGAAACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAG
GGCATCTCCAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGG
ATGTGGTCACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGG
CGTGCAGGAGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAG
AGCTTGAAGTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTA
CGACTTCCCCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGC
TGTTCCGCGTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTC
ACCATCTCGAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGT
GTTTGCCGTCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACG
ATGCCCAGCCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACG
GTAATGATGATCAAGGAGCTGCTGGACACGCGCATCCGACCCACCGTCCA
GGAGGACGGCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTCA
AGCTAAAGATGCAAGGCTCCTGCTCCTCCTGTCCCAGCT

BS13471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32500-PA 852 CG32500-RA 1..673 17..689 3365 100 Plus
CG33502-PA 852 CG33502-RA 1..673 17..689 3365 100 Plus
CG32857-PA 852 CG32857-RA 1..673 17..689 3365 100 Plus
CG32500-PB 333 CG32500-RB 1..325 17..341 1625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33502-RA 1060 CG33502-RA 58..730 17..689 3365 100 Plus
CG32857-RA 1059 CG32857-RA 57..729 17..689 3365 100 Plus
CG32500-RA 1084 CG32500-RA 82..754 17..689 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21609687..21610035 689..341 1745 100 Minus
X 23542271 X 21615779..21616127 689..341 1745 100 Minus
X 23542271 X 21621871..21622219 689..341 1745 100 Minus
X 23542271 X 21611086..21611342 341..85 1285 100 Minus
X 23542271 X 21617178..21617434 341..85 1285 100 Minus
X 23542271 X 21623286..21623542 341..85 1285 100 Minus
X 23542271 X 21611401..21611469 85..17 345 100 Minus
X 23542271 X 21617493..21617561 85..17 345 100 Minus
X 23542271 X 21623601..21623669 85..17 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:01 has no hits.

BS13471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:13 Download gff for BS13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32857-PA 1..673 17..689 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:16 Download gff for BS13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32500-RA 82..754 17..689 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:25 Download gff for BS13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32500-RA 82..754 17..689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:25 Download gff for BS13471.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21611086..21611342 85..341 100 <- Minus
X 21609687..21610034 342..689 100 <- Minus
X 21611402..21611469 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:16 Download gff for BS13471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21480714..21481061 342..689 100 <- Minus
arm_X 21482113..21482369 85..341 100 <- Minus
arm_X 21482429..21482496 17..84 100   Minus

BS13471.complete Sequence

884 bp assembled on 2006-11-01

GenBank Submission: FJ637468

> BS13471.complete
GAAGTTATCAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATA
CGCTGCGAAACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAG
GGCATCTCCAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGG
ATGTGGTCACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGG
CGTGCAGGAGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAG
AGCTTGAAGTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTA
CGACTTCCCCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGC
TGTTCCGCGTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTC
ACCATCTCGAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGT
GTTTGCCGTCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACG
ATGCCCAGCCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACG
GTAATGATGATCAAGGAGCTGCTGGACACGCGCATCCGACCCACCGTCCA
GGAGGACGGCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTCA
AGCTAAAGATGCAAGGCTCCTGCTCCTCCTGTCCCAGCTCCATTGTGACG
CTGAAGAACGGAGTGCAGAACATGCTGCAATTCTACATACCGGAGGTGGA
GTCCGTTGAGCAGGTCTTCGACGAGGCGGACAGGATGATCGAGAGCGAGT
TTGAGCGCTTCGAAAAGAACCTCAAGACGCTCAAGCAGCAGGAGCCCAGT
GGCGGCGGTCCCCATTAGAAGCTTTCTAGACCAT

BS13471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33502-RA 852 CG33502-PA 1..852 17..868 4260 100 Plus
CG32857-RA 852 CG32857-PA 1..852 17..868 4260 100 Plus
CG32500-RA 852 CG32500-PA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33502-RA 1060 CG33502-RA 58..910 17..869 4265 100 Plus
CG32857-RA 1059 CG32857-RA 57..909 17..869 4265 100 Plus
CG32500-RA 1084 CG32500-RA 82..934 17..869 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21609507..21610035 869..341 2645 100 Minus
X 23542271 X 21615599..21616127 869..341 2645 100 Minus
X 23542271 X 21621691..21622219 869..341 2645 100 Minus
X 23542271 X 21611086..21611342 341..85 1285 100 Minus
X 23542271 X 21623286..21623542 341..85 1285 100 Minus
X 23542271 X 21617178..21617434 341..85 1285 100 Minus
X 23542271 X 21611401..21611469 85..17 345 100 Minus
X 23542271 X 21617493..21617561 85..17 345 100 Minus
X 23542271 X 21623601..21623669 85..17 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:39:45 has no hits.

BS13471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:51 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
CG33502-RA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:24 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32857-RA 36..895 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:45 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32500-RA 82..933 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:51 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32857-RA 36..895 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:15 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
CG32500-RA 82..933 17..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:15 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
X 21609508..21610034 342..868 100 <- Minus
X 21611086..21611342 85..341 100 <- Minus
X 21611402..21611469 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:45 Download gff for BS13471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21480535..21481061 342..868 100 <- Minus
arm_X 21482113..21482369 85..341 100 <- Minus
arm_X 21482429..21482496 17..84 100   Minus

BS13471.pep Sequence

Translation from 16 to 867

> BS13471.pep
MSKFLSQAALNTLRNTRLGSRQLVRSFKGISNTRNHRIPAHQESGCGHSV
GCGLLELRMPVACRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNG
TTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIM
DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGD
IVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQV
FDEADRMIESEFERFEKNLKTLKQQEPSGGGPH*

BS13471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33502-PA 283 CG33502-PA 1..283 1..283 1468 100 Plus
CG32857-PA 283 CG32857-PA 1..283 1..283 1468 100 Plus
CG32500-PA 283 CG32500-PA 1..283 1..283 1468 100 Plus