Clone BS13472 Report

Search the DGRC for BS13472

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG14881-RB
Protein status:BS13472.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13472.3prime Sequence

535 bp (533 high quality bases) assembled on 2006-10-13

> BS13472.3prime
ATGGTCTAGAAAGCTTTTAACCACTTGCACCTGCTTCACTGCTTTGCTGC
TCAGCTGTCGGAACGTTTGGGGAAGCCTTTTGCAGCTGGACAACCTCTGT
GCGTGTTGCGAAATCTTGCAGCAGCAACTGACAAAGTTTAACGATGCGTT
CATCGTGGGCCTTGACCCGCCACTCTTGCACCGTCCTTAGCACCGCAGGG
CTCAGAAGTAAATCCCGTTCAGTCCGTTCACCAAATTCCAGTAATTGGTA
AAAGAGCGCCAGGCTGTGAAGTACTATTTCCGGGTGATCAGTGCGCACAA
AGAGGCCGGTTAGCAGTTTTAGCTGCTCTCTGATAAATTTGGCAGCCGTT
TTGTCCAGGCAAAGGTTACACAATGCCGCAATTCCGTGCACTTTTAATAG
CTGATCCTGTGTCTCCAGCGATGCCACAAATACATCCAAGGCGTCCGCCT
CCAGGAGATGCGACCAGTTGATGGGATCGTATGCAAAATTGGCCAAATTA
GCAGTCACCTGCTGCTGGGCCTCGATGTTGGTTGT

BS13472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-PB 615 CG14881-RB 97..615 535..17 2595 100 Minus
CG14881-PA 861 CG14881-RA 97..489 535..143 1965 100 Minus
CG14881-PA 861 CG14881-RA 490..527 54..17 190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 1054 CG14881-RB 163..681 535..17 2595 100 Minus
CG14881-RA 966 CG14881-RA 163..555 535..143 1965 100 Minus
CG14881-RA 966 CG14881-RA 556..593 54..17 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16435355..16435693 355..17 1695 100 Minus
3R 32079331 3R 16435133..16435301 523..355 845 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:05 has no hits.

BS13472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:13 Download gff for BS13472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-PB 97..615 17..535 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:18 Download gff for BS13472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 163..688 10..535 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:35 Download gff for BS13472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 163..688 10..535 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:35 Download gff for BS13472.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16435134..16435301 355..522 100 -> Minus
3R 16435356..16435700 10..354 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:18 Download gff for BS13472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12260856..12261023 355..522 100 -> Minus
arm_3R 12261078..12261422 10..354 99   Minus

BS13472.5prime Sequence

537 bp (489 high quality bases) assembled on 2006-10-13

> BS13472.5prime
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTT

BS13472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-PB 615 CG14881-RB 1..521 17..537 2605 100 Plus
CG14881-PA 861 CG14881-RA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 1054 CG14881-RB 67..587 17..537 2605 100 Plus
CG14881-RA 966 CG14881-RA 67..555 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16435355..16435599 293..537 1225 100 Plus
3R 32079331 3R 16435133..16435301 125..293 845 100 Plus
3R 32079331 3R 16434965..16435073 17..125 545 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:42:23 has no hits.

BS13472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:14 Download gff for BS13472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-PB 1..521 17..537 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:18 Download gff for BS13472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 67..587 17..537 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:19 Download gff for BS13472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 67..587 17..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:19 Download gff for BS13472.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16434965..16435073 17..125 100 -> Plus
3R 16435134..16435301 126..293 100 -> Plus
3R 16435356..16435599 294..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:18 Download gff for BS13472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12260687..12260795 17..125 100 -> Plus
arm_3R 12260856..12261023 126..293 100 -> Plus
arm_3R 12261078..12261321 294..537 100   Plus

BS13472.complete Sequence

647 bp assembled on 2006-11-01

GenBank Submission: FJ637469

> BS13472.complete
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACA
GAGGTTGTCCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCA
GCAAAGCAGTGAAGCAGGTGCAAGTGGTTAAAAGCTTTCTAGACCAT

BS13472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 615 CG14881-PB 1..615 17..631 3075 100 Plus
CG14881-RA 861 CG14881-PA 1..489 17..505 2445 100 Plus
CG14881-RA 861 CG14881-PA 490..527 594..631 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 1054 CG14881-RB 67..681 17..631 3075 100 Plus
CG14881-RA 966 CG14881-RA 67..555 17..505 2445 100 Plus
CG14881-RA 966 CG14881-RA 556..593 594..631 190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16435355..16435693 293..631 1695 100 Plus
3R 32079331 3R 16435133..16435301 125..293 845 100 Plus
3R 32079331 3R 16434965..16435073 17..125 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:55:47 has no hits.

BS13472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:52 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:26 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 41..662 17..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:55 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 72..679 22..629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:53 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 41..662 17..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:50 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 72..679 22..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:50 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16434970..16435073 22..125 100 -> Plus
3R 16435134..16435301 126..293 100 -> Plus
3R 16435356..16435691 294..629 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:55 Download gff for BS13472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12260692..12260795 22..125 100 -> Plus
arm_3R 12260856..12261023 126..293 100 -> Plus
arm_3R 12261078..12261413 294..629 100   Plus

BS13472.pep Sequence

Translation from 16 to 630

> BS13472.pep
MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFA
YDPINWSHLLEADALDVFVASLETQDQLLKVHGIAALCNLCLDKTAAKFI
REQLKLLTGLFVRTDHPEIVLHSLALFYQLLEFGERTERDLLLSPAVLRT
VQEWRVKAHDERIVKLCQLLLQDFATRTEVVQLQKASPNVPTAEQQSSEA
GASG*

BS13472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-PB 204 CG14881-PB 1..204 1..204 1037 100 Plus
CG14881-PA 286 CG14881-PA 1..164 1..164 838 99.4 Plus