Clone Sequence Records
BS13472.3prime Sequence
535 bp (533 high quality bases) assembled on 2006-10-13
> BS13472.3prime
ATGGTCTAGAAAGCTTTTAACCACTTGCACCTGCTTCACTGCTTTGCTGC
TCAGCTGTCGGAACGTTTGGGGAAGCCTTTTGCAGCTGGACAACCTCTGT
GCGTGTTGCGAAATCTTGCAGCAGCAACTGACAAAGTTTAACGATGCGTT
CATCGTGGGCCTTGACCCGCCACTCTTGCACCGTCCTTAGCACCGCAGGG
CTCAGAAGTAAATCCCGTTCAGTCCGTTCACCAAATTCCAGTAATTGGTA
AAAGAGCGCCAGGCTGTGAAGTACTATTTCCGGGTGATCAGTGCGCACAA
AGAGGCCGGTTAGCAGTTTTAGCTGCTCTCTGATAAATTTGGCAGCCGTT
TTGTCCAGGCAAAGGTTACACAATGCCGCAATTCCGTGCACTTTTAATAG
CTGATCCTGTGTCTCCAGCGATGCCACAAATACATCCAAGGCGTCCGCCT
CCAGGAGATGCGACCAGTTGATGGGATCGTATGCAAAATTGGCCAAATTA
GCAGTCACCTGCTGCTGGGCCTCGATGTTGGTTGT
BS13472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-PB | 615 | CG14881-RB | 97..615 | 535..17 | 2595 | 100 | Minus |
CG14881-PA | 861 | CG14881-RA | 97..489 | 535..143 | 1965 | 100 | Minus |
CG14881-PA | 861 | CG14881-RA | 490..527 | 54..17 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 1054 | CG14881-RB | 163..681 | 535..17 | 2595 | 100 | Minus |
CG14881-RA | 966 | CG14881-RA | 163..555 | 535..143 | 1965 | 100 | Minus |
CG14881-RA | 966 | CG14881-RA | 556..593 | 54..17 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16435355..16435693 | 355..17 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 16435133..16435301 | 523..355 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:05 has no hits.
BS13472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:13 Download gff for
BS13472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-PB | 97..615 | 17..535 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:18 Download gff for
BS13472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 163..688 | 10..535 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:35 Download gff for
BS13472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 163..688 | 10..535 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:35 Download gff for
BS13472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16435134..16435301 | 355..522 | 100 | -> | Minus |
3R | 16435356..16435700 | 10..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:18 Download gff for
BS13472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12260856..12261023 | 355..522 | 100 | -> | Minus |
arm_3R | 12261078..12261422 | 10..354 | 99 | | Minus |
BS13472.5prime Sequence
537 bp (489 high quality bases) assembled on 2006-10-13
> BS13472.5prime
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTT
BS13472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-PB | 615 | CG14881-RB | 1..521 | 17..537 | 2605 | 100 | Plus |
CG14881-PA | 861 | CG14881-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 1054 | CG14881-RB | 67..587 | 17..537 | 2605 | 100 | Plus |
CG14881-RA | 966 | CG14881-RA | 67..555 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16435355..16435599 | 293..537 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 16435133..16435301 | 125..293 | 845 | 100 | Plus |
3R | 32079331 | 3R | 16434965..16435073 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:42:23 has no hits.
BS13472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:14 Download gff for
BS13472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-PB | 1..521 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:18 Download gff for
BS13472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 67..587 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:19 Download gff for
BS13472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 67..587 | 17..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:19 Download gff for
BS13472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16434965..16435073 | 17..125 | 100 | -> | Plus |
3R | 16435134..16435301 | 126..293 | 100 | -> | Plus |
3R | 16435356..16435599 | 294..537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:18 Download gff for
BS13472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12260687..12260795 | 17..125 | 100 | -> | Plus |
arm_3R | 12260856..12261023 | 126..293 | 100 | -> | Plus |
arm_3R | 12261078..12261321 | 294..537 | 100 | | Plus |
BS13472.complete Sequence
647 bp assembled on 2006-11-01
GenBank Submission: FJ637469
> BS13472.complete
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACA
GAGGTTGTCCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCA
GCAAAGCAGTGAAGCAGGTGCAAGTGGTTAAAAGCTTTCTAGACCAT
BS13472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 615 | CG14881-PB | 1..615 | 17..631 | 3075 | 100 | Plus |
CG14881-RA | 861 | CG14881-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG14881-RA | 861 | CG14881-PA | 490..527 | 594..631 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 1054 | CG14881-RB | 67..681 | 17..631 | 3075 | 100 | Plus |
CG14881-RA | 966 | CG14881-RA | 67..555 | 17..505 | 2445 | 100 | Plus |
CG14881-RA | 966 | CG14881-RA | 556..593 | 594..631 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16435355..16435693 | 293..631 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 16435133..16435301 | 125..293 | 845 | 100 | Plus |
3R | 32079331 | 3R | 16434965..16435073 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:55:47 has no hits.
BS13472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:52 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:26 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 41..662 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:55 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 72..679 | 22..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:53 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 41..662 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:50 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 72..679 | 22..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:50 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16434970..16435073 | 22..125 | 100 | -> | Plus |
3R | 16435134..16435301 | 126..293 | 100 | -> | Plus |
3R | 16435356..16435691 | 294..629 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:55 Download gff for
BS13472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12260692..12260795 | 22..125 | 100 | -> | Plus |
arm_3R | 12260856..12261023 | 126..293 | 100 | -> | Plus |
arm_3R | 12261078..12261413 | 294..629 | 100 | | Plus |
BS13472.pep Sequence
Translation from 16 to 630
> BS13472.pep
MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFA
YDPINWSHLLEADALDVFVASLETQDQLLKVHGIAALCNLCLDKTAAKFI
REQLKLLTGLFVRTDHPEIVLHSLALFYQLLEFGERTERDLLLSPAVLRT
VQEWRVKAHDERIVKLCQLLLQDFATRTEVVQLQKASPNVPTAEQQSSEA
GASG*
BS13472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-PB | 204 | CG14881-PB | 1..204 | 1..204 | 1037 | 100 | Plus |
CG14881-PA | 286 | CG14881-PA | 1..164 | 1..164 | 838 | 99.4 | Plus |