Clone BS13473 Report

Search the DGRC for BS13473

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG15083-RA
Protein status:BS13473.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13473.3prime Sequence

483 bp (483 high quality bases) assembled on 2006-10-13

> BS13473.3prime
ATGGTCTAGAAAGCTTCTAAACCACATTCATGGCGCGCGGTGTTTGTTTG
CTGGCTTCGCTGTTTTTCAGCTGGAGGTAGAAGGAGTACACAATTCGTGC
GCTGAAGAGGATCAATAGAAATGTGATGATGTAAACGAGCAGGGCACCGA
AAACGTTGTTCATTCCGGTAGCCTCGCGATATCCTCCGTAGTGGAAGATA
ACCCCGAAGACGGCAAACGGAAAGGAGATGGCTTCAATGGCAGCGAAGAT
CAGCCAGACGAACACCAGAATTGGCTTTTCCTTCAGGGTTCCTATCAATA
AGCAAATATTGGCGACTACTACGATGGCAAATCCAATAAAGGTAAGAACG
TTTGGAGCGAATATAACGTTGAAAGTCATGCTCAATAGCCAATAGATCGC
GATTCCCAGGCACCAGCTCCGCAAATCGGTATTGCACGGGCCATTTTCCA
CCGTCAGATCGATTTTCATGTCGACTGATAACT

BS13473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-PA 453 CG15083-RA 1..453 469..17 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-RA 669 CG15083-RA 130..582 469..17 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18836414..18836578 282..118 825 100 Minus
2R 25286936 2R 18835392..18835512 469..349 605 100 Minus
2R 25286936 2R 18836655..18836755 117..17 505 100 Minus
2R 25286936 2R 18836279..18836352 349..276 355 98.6 Minus
Blast to na_te.dros performed on 2015-02-03 06:33:52 has no hits.

BS13473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:14 Download gff for BS13473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15083-PA 1..453 17..469 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:58 Download gff for BS13473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 125..587 11..474 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:29 Download gff for BS13473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 125..587 11..474 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:29 Download gff for BS13473.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18836280..18836347 281..348 100 -> Minus
2R 18835387..18835512 349..474 98 -> Minus
2R 18836416..18836578 118..280 100 -> Minus
2R 18836655..18836760 11..117 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:58 Download gff for BS13473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14724160..14724265 11..117 97   Minus
arm_2R 14722892..14723017 349..474 98 -> Minus
arm_2R 14723785..14723852 281..348 100 -> Minus
arm_2R 14723921..14724083 118..280 100 -> Minus

BS13473.5prime Sequence

483 bp (483 high quality bases) assembled on 2006-10-13

> BS13473.5prime
GAAGTTATCAGTCGACATGAAAATCGATCTGACGGTGGAAAATGGCCCGT
GCAATACCGATTTGCGGAGCTGGTGCCTGGGAATCGCGATCTATTGGCTA
TTGAGCATGACTTTCAACGTTATATTCGCTCCAAACGTTCTTACCTTTAT
TGGATTTGCCATCGTAGTAGTCGCCAATATTTGCTTATTGATAGGAACCC
TGAAGGAAAAGCCAATTCTGGTGTTCGTCTGGCTGATCTTCGCTGCCATT
GAAGCCATCTCCTTTCCGTTTGCCGTCTTCGGGGTTATCTTCCACTACGG
AGGATATCGCGAGGCTACCGGAATGAACAACGTTTTCGGTGCCCTGCTCG
TTTACATCATCACATTTCTATTGATCCTCTTCAGCGCACGAATTGTGTAC
TCCTTCTACCTCCAGCTGAAAAACAGCGAAGCCAGCAAACAAACACCGCG
CGCCATGAATGTGGTTTAGAAGCTTTCTAGACC

BS13473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-PA 453 CG15083-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-RA 669 CG15083-RA 130..582 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18836414..18836578 204..368 825 100 Plus
2R 25286936 2R 18835392..18835512 17..137 605 100 Plus
2R 25286936 2R 18836655..18836755 369..469 505 100 Plus
2R 25286936 2R 18836279..18836352 137..210 355 98.6 Plus
Blast to na_te.dros performed on 2015-02-08 11:46:13 has no hits.

BS13473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:14 Download gff for BS13473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15083-PA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:46 Download gff for BS13473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 125..587 12..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:04 Download gff for BS13473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 125..587 12..475 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:04 Download gff for BS13473.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18836280..18836347 138..205 100 -> Plus
2R 18835387..18835512 12..137 98 -> Plus
2R 18836416..18836578 206..368 100 -> Plus
2R 18836655..18836760 369..475 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:46 Download gff for BS13473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14722892..14723017 12..137 98 -> Plus
arm_2R 14723785..14723852 138..205 100 -> Plus
arm_2R 14723921..14724083 206..368 100 -> Plus
arm_2R 14724160..14724265 369..475 97   Plus

BS13473.complete Sequence

485 bp assembled on 2006-11-01

GenBank Submission: FJ637470

> BS13473.complete
GAAGTTATCAGTCGACATGAAAATCGATCTGACGGTGGAAAATGGCCCGT
GCAATACCGATTTGCGGAGCTGGTGCCTGGGAATCGCGATCTATTGGCTA
TTGAGCATGACTTTCAACGTTATATTCGCTCCAAACGTTCTTACCTTTAT
TGGATTTGCCATCGTAGTAGTCGCCAATATTTGCTTATTGATAGGAACCC
TGAAGGAAAAGCCAATTCTGGTGTTCGTCTGGCTGATCTTCGCTGCCATT
GAAGCCATCTCCTTTCCGTTTGCCGTCTTCGGGGTTATCTTCCACTACGG
AGGATATCGCGAGGCTACCGGAATGAACAACGTTTTCGGTGCCCTGCTCG
TTTACATCATCACATTTCTATTGATCCTCTTCAGCGCACGAATTGTGTAC
TCCTTCTACCTCCAGCTGAAAAACAGCGAAGCCAGCAAACAAACACCGCG
CGCCATGAATGTGGTTTAGAAGCTTTCTAGACCAT

BS13473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-RA 453 CG15083-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-RA 669 CG15083-RA 130..582 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18836414..18836578 204..368 825 100 Plus
2R 25286936 2R 18835392..18835512 17..137 605 100 Plus
2R 25286936 2R 18836655..18836755 369..469 505 100 Plus
2R 25286936 2R 18836279..18836352 137..210 355 98.6 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:30 has no hits.

BS13473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:54 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:28 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 127..589 12..475 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:47 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 130..582 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:54 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 127..589 12..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:20 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15083-RA 130..582 17..469 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:20 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18835392..18835512 17..137 100 -> Plus
2R 18836280..18836347 138..205 100 -> Plus
2R 18836416..18836578 206..368 100 -> Plus
2R 18836655..18836755 369..469 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:47 Download gff for BS13473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14723785..14723852 138..205 100 -> Plus
arm_2R 14723921..14724083 206..368 100 -> Plus
arm_2R 14724160..14724260 369..469 100   Plus
arm_2R 14722897..14723017 17..137 100 -> Plus

BS13473.pep Sequence

Translation from 16 to 468

> BS13473.pep
MKIDLTVENGPCNTDLRSWCLGIAIYWLLSMTFNVIFAPNVLTFIGFAIV
VVANICLLIGTLKEKPILVFVWLIFAAIEAISFPFAVFGVIFHYGGYREA
TGMNNVFGALLVYIITFLLILFSARIVYSFYLQLKNSEASKQTPRAMNVV
*

BS13473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15083-PA 150 CG15083-PA 1..150 1..150 769 100 Plus