Clone Sequence Records
BS13473.3prime Sequence
483 bp (483 high quality bases) assembled on 2006-10-13
> BS13473.3prime
ATGGTCTAGAAAGCTTCTAAACCACATTCATGGCGCGCGGTGTTTGTTTG
CTGGCTTCGCTGTTTTTCAGCTGGAGGTAGAAGGAGTACACAATTCGTGC
GCTGAAGAGGATCAATAGAAATGTGATGATGTAAACGAGCAGGGCACCGA
AAACGTTGTTCATTCCGGTAGCCTCGCGATATCCTCCGTAGTGGAAGATA
ACCCCGAAGACGGCAAACGGAAAGGAGATGGCTTCAATGGCAGCGAAGAT
CAGCCAGACGAACACCAGAATTGGCTTTTCCTTCAGGGTTCCTATCAATA
AGCAAATATTGGCGACTACTACGATGGCAAATCCAATAAAGGTAAGAACG
TTTGGAGCGAATATAACGTTGAAAGTCATGCTCAATAGCCAATAGATCGC
GATTCCCAGGCACCAGCTCCGCAAATCGGTATTGCACGGGCCATTTTCCA
CCGTCAGATCGATTTTCATGTCGACTGATAACT
BS13473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-PA | 453 | CG15083-RA | 1..453 | 469..17 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-RA | 669 | CG15083-RA | 130..582 | 469..17 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18836414..18836578 | 282..118 | 825 | 100 | Minus |
2R | 25286936 | 2R | 18835392..18835512 | 469..349 | 605 | 100 | Minus |
2R | 25286936 | 2R | 18836655..18836755 | 117..17 | 505 | 100 | Minus |
2R | 25286936 | 2R | 18836279..18836352 | 349..276 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:33:52 has no hits.
BS13473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:14 Download gff for
BS13473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-PA | 1..453 | 17..469 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:58 Download gff for
BS13473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 125..587 | 11..474 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:29 Download gff for
BS13473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 125..587 | 11..474 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:29 Download gff for
BS13473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18836280..18836347 | 281..348 | 100 | -> | Minus |
2R | 18835387..18835512 | 349..474 | 98 | -> | Minus |
2R | 18836416..18836578 | 118..280 | 100 | -> | Minus |
2R | 18836655..18836760 | 11..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:58 Download gff for
BS13473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14724160..14724265 | 11..117 | 97 | | Minus |
arm_2R | 14722892..14723017 | 349..474 | 98 | -> | Minus |
arm_2R | 14723785..14723852 | 281..348 | 100 | -> | Minus |
arm_2R | 14723921..14724083 | 118..280 | 100 | -> | Minus |
BS13473.5prime Sequence
483 bp (483 high quality bases) assembled on 2006-10-13
> BS13473.5prime
GAAGTTATCAGTCGACATGAAAATCGATCTGACGGTGGAAAATGGCCCGT
GCAATACCGATTTGCGGAGCTGGTGCCTGGGAATCGCGATCTATTGGCTA
TTGAGCATGACTTTCAACGTTATATTCGCTCCAAACGTTCTTACCTTTAT
TGGATTTGCCATCGTAGTAGTCGCCAATATTTGCTTATTGATAGGAACCC
TGAAGGAAAAGCCAATTCTGGTGTTCGTCTGGCTGATCTTCGCTGCCATT
GAAGCCATCTCCTTTCCGTTTGCCGTCTTCGGGGTTATCTTCCACTACGG
AGGATATCGCGAGGCTACCGGAATGAACAACGTTTTCGGTGCCCTGCTCG
TTTACATCATCACATTTCTATTGATCCTCTTCAGCGCACGAATTGTGTAC
TCCTTCTACCTCCAGCTGAAAAACAGCGAAGCCAGCAAACAAACACCGCG
CGCCATGAATGTGGTTTAGAAGCTTTCTAGACC
BS13473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-PA | 453 | CG15083-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-RA | 669 | CG15083-RA | 130..582 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18836414..18836578 | 204..368 | 825 | 100 | Plus |
2R | 25286936 | 2R | 18835392..18835512 | 17..137 | 605 | 100 | Plus |
2R | 25286936 | 2R | 18836655..18836755 | 369..469 | 505 | 100 | Plus |
2R | 25286936 | 2R | 18836279..18836352 | 137..210 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:46:13 has no hits.
BS13473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:14 Download gff for
BS13473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-PA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:46 Download gff for
BS13473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 125..587 | 12..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:04 Download gff for
BS13473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 125..587 | 12..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:04 Download gff for
BS13473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18836280..18836347 | 138..205 | 100 | -> | Plus |
2R | 18835387..18835512 | 12..137 | 98 | -> | Plus |
2R | 18836416..18836578 | 206..368 | 100 | -> | Plus |
2R | 18836655..18836760 | 369..475 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:46 Download gff for
BS13473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14722892..14723017 | 12..137 | 98 | -> | Plus |
arm_2R | 14723785..14723852 | 138..205 | 100 | -> | Plus |
arm_2R | 14723921..14724083 | 206..368 | 100 | -> | Plus |
arm_2R | 14724160..14724265 | 369..475 | 97 | | Plus |
BS13473.complete Sequence
485 bp assembled on 2006-11-01
GenBank Submission: FJ637470
> BS13473.complete
GAAGTTATCAGTCGACATGAAAATCGATCTGACGGTGGAAAATGGCCCGT
GCAATACCGATTTGCGGAGCTGGTGCCTGGGAATCGCGATCTATTGGCTA
TTGAGCATGACTTTCAACGTTATATTCGCTCCAAACGTTCTTACCTTTAT
TGGATTTGCCATCGTAGTAGTCGCCAATATTTGCTTATTGATAGGAACCC
TGAAGGAAAAGCCAATTCTGGTGTTCGTCTGGCTGATCTTCGCTGCCATT
GAAGCCATCTCCTTTCCGTTTGCCGTCTTCGGGGTTATCTTCCACTACGG
AGGATATCGCGAGGCTACCGGAATGAACAACGTTTTCGGTGCCCTGCTCG
TTTACATCATCACATTTCTATTGATCCTCTTCAGCGCACGAATTGTGTAC
TCCTTCTACCTCCAGCTGAAAAACAGCGAAGCCAGCAAACAAACACCGCG
CGCCATGAATGTGGTTTAGAAGCTTTCTAGACCAT
BS13473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-RA | 453 | CG15083-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-RA | 669 | CG15083-RA | 130..582 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18836414..18836578 | 204..368 | 825 | 100 | Plus |
2R | 25286936 | 2R | 18835392..18835512 | 17..137 | 605 | 100 | Plus |
2R | 25286936 | 2R | 18836655..18836755 | 369..469 | 505 | 100 | Plus |
2R | 25286936 | 2R | 18836279..18836352 | 137..210 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:30 has no hits.
BS13473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:54 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:28 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 127..589 | 12..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:47 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 130..582 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:54 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 127..589 | 12..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:20 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15083-RA | 130..582 | 17..469 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:20 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18835392..18835512 | 17..137 | 100 | -> | Plus |
2R | 18836280..18836347 | 138..205 | 100 | -> | Plus |
2R | 18836416..18836578 | 206..368 | 100 | -> | Plus |
2R | 18836655..18836755 | 369..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:47 Download gff for
BS13473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14723785..14723852 | 138..205 | 100 | -> | Plus |
arm_2R | 14723921..14724083 | 206..368 | 100 | -> | Plus |
arm_2R | 14724160..14724260 | 369..469 | 100 | | Plus |
arm_2R | 14722897..14723017 | 17..137 | 100 | -> | Plus |
BS13473.pep Sequence
Translation from 16 to 468
> BS13473.pep
MKIDLTVENGPCNTDLRSWCLGIAIYWLLSMTFNVIFAPNVLTFIGFAIV
VVANICLLIGTLKEKPILVFVWLIFAAIEAISFPFAVFGVIFHYGGYREA
TGMNNVFGALLVYIITFLLILFSARIVYSFYLQLKNSEASKQTPRAMNVV
*
BS13473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15083-PA | 150 | CG15083-PA | 1..150 | 1..150 | 769 | 100 | Plus |