Clone Sequence Records
BS13474.3prime Sequence
357 bp (357 high quality bases) assembled on 2006-10-13
> BS13474.3prime
ATGGTCTAGAAAGCTTTTACTTGGTCGCCGACTTCAGGTAGGCGATCAGA
TCGCCGCGCTCGTTGGGCTTCTTCAGACCGGCGAAGATCATCTTGGTGCC
GGGGATGTACTTCTTGGGGTTCTCCAGGTACTCGAACAGGGTGTCCTCGT
TCCAGGTGATGCCCTTGGCCTTGTTGGCGTCCGTGTACGCGAATCCGGCC
GCCTGTCCGGTCTTGCGACCGATCAGACCATGCAGATTGGGTCCAACCTT
GTGCTTGCCACCAGCCTCAACGGTGTGGCACTGGGCGCAGCGCTGCACGA
ACAGCTTCTTTCCCTTCTCAACATCACCAGCAGGAACGCCCATGTCGACT
GATAACT
BS13474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17903-PA | 327 | Cyt-c-p-RA | 1..327 | 343..17 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-c-p-RB | 634 | CG17903-RB | 40..366 | 343..17 | 1635 | 100 | Minus |
Cyt-c-p-RA | 681 | CG17903-RA | 87..413 | 343..17 | 1635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16722050..16722376 | 343..17 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:46:26 has no hits.
BS13474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:15 Download gff for
BS13474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17903-PA | 1..327 | 17..343 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:48 Download gff for
BS13474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 83..413 | 17..351 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:06 Download gff for
BS13474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 83..413 | 17..351 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:06 Download gff for
BS13474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16722046..16722376 | 17..351 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:48 Download gff for
BS13474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16722046..16722376 | 17..351 | 98 | | Minus |
BS13474.5prime Sequence
357 bp (357 high quality bases) assembled on 2006-10-13
> BS13474.5prime
GAAGTTATCAGTCGACATGGGCGTTCCTGCTGGTGATGTTGAGAAGGGAA
AGAAGCTGTTCGTGCAGCGCTGCGCCCAGTGCCACACCGTTGAGGCTGGT
GGCAAGCACAAGGTTGGACCCAATCTGCATGGTCTGATCGGTCGCAAGAC
CGGACAGGCGGCCGGATTCGCGTACACGGACGCCAACAAGGCCAAGGGCA
TCACCTGGAACGAGGACACCCTGTTCGAGTACCTGGAGAACCCCAAGAAG
TACATCCCCGGCACCAAGATGATCTTCGCCGGTCTGAAGAAGCCCAACGA
GCGCGGCGATCTGATCGCCTACCTGAAGTCGGCGACCAAGTAAAAGCTTT
CTAGACC
BS13474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17903-PA | 327 | Cyt-c-p-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-c-p-RB | 634 | CG17903-RB | 40..366 | 17..343 | 1635 | 100 | Plus |
Cyt-c-p-RA | 681 | CG17903-RA | 87..413 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16722050..16722376 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:01 has no hits.
BS13474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:15 Download gff for
BS13474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17903-PA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:45 Download gff for
BS13474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 83..413 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:32 Download gff for
BS13474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 83..413 | 9..343 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:32 Download gff for
BS13474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16722046..16722376 | 9..343 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:45 Download gff for
BS13474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16722046..16722376 | 9..343 | 98 | | Plus |
BS13474.complete Sequence
359 bp assembled on 2006-11-01
GenBank Submission: FJ637471
> BS13474.complete
GAAGTTATCAGTCGACATGGGCGTTCCTGCTGGTGATGTTGAGAAGGGAA
AGAAGCTGTTCGTGCAGCGCTGCGCCCAGTGCCACACCGTTGAGGCTGGT
GGCAAGCACAAGGTTGGACCCAATCTGCATGGTCTGATCGGTCGCAAGAC
CGGACAGGCGGCCGGATTCGCGTACACGGACGCCAACAAGGCCAAGGGCA
TCACCTGGAACGAGGACACCCTGTTCGAGTACCTGGAGAACCCCAAGAAG
TACATCCCCGGCACCAAGATGATCTTCGCCGGTCTGAAGAAGCCCAACGA
GCGCGGCGATCTGATCGCCTACCTGAAGTCGGCGACCAAGTAAAAGCTTT
CTAGACCAT
BS13474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-c-p-RB | 327 | CG17903-PB | 1..327 | 17..343 | 1635 | 100 | Plus |
Cyt-c-p-RA | 327 | CG17903-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-c-p-RB | 634 | CG17903-RB | 40..366 | 17..343 | 1635 | 100 | Plus |
Cyt-c-p-RA | 681 | CG17903-RA | 87..413 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16722050..16722376 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:48:48 has no hits.
BS13474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:55 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 1..327 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:29 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 141..471 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:36 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 87..411 | 17..341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:55 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 141..471 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:14 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-c-p-RA | 87..411 | 17..341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:14 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16722050..16722374 | 17..341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:36 Download gff for
BS13474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16722050..16722374 | 17..341 | 100 | | Plus |
BS13474.pep Sequence
Translation from 16 to 342
> BS13474.pep
MGVPAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAG
FAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLI
AYLKSATK*
BS13474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-c-p-PB | 108 | CG17903-PB | 1..108 | 1..108 | 578 | 100 | Plus |
Cyt-c-p-PA | 108 | CG17903-PA | 1..108 | 1..108 | 578 | 100 | Plus |
Cyt-c-d-PB | 105 | CG13263-PB | 3..103 | 5..105 | 407 | 72.3 | Plus |
Cyt-c-d-PA | 105 | CG13263-PA | 3..103 | 5..105 | 407 | 72.3 | Plus |