Clone BS13478 Report

Search the DGRC for BS13478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG17244-RA
Protein status:BS13478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13478.3prime Sequence

482 bp (473 high quality bases) assembled on 2006-10-13

> BS13478.3prime
ATGGTCTAGAAAGCTTTCACCAGATTTCCCGACAGCGACCACGATGGTCG
GGCAGATAGCCGGGCTGGCAGGGGAAGTCGATCATGGCCACCATCATGGT
CTTCTCGGTGGTGGTTTGGCCGGCGACCGGAGGCTCCGTGTTTGCCTCGT
GGACGGCCAGCACCTGTTGCTCGTCGAGATCGACACACTGGTTGGGCTGA
ACGGGACTGGTCTGGTTATTGGGACAGGTGATCCTGTGCAGGCAGTATTT
CACACACGGTTTTGGAGCCTGAACATTCGCCAGCTTCTTTTTGCACTTGA
ACTGCGCCACACAGTCCTTCGGGATTTCGGGAATATTGTTGTTGATGTAG
AAGGGTCGGCGGGGCTCCTCTGTGGTCGTCGTAGTTGTGCTGGTTGTTGT
GGAGGTGGACTCCCTGTGGAAAATTCTGCCCAGAATTCCGCCCTGGACGG
CGGCTACCAGCAGAGCGGCCAATAAGGCCACA

BS13478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-PA 480 CG17244-RA 15..480 482..17 2330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 895 CG17244-RB 53..518 482..17 2330 100 Minus
CG17244-RA 633 CG17244-RA 53..518 482..17 2330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22977322..22977787 482..17 2330 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:51:07 has no hits.

BS13478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:19 Download gff for BS13478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-PA 16..480 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:47 Download gff for BS13478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 54..518 17..481 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:42 Download gff for BS13478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 54..518 17..481 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:42 Download gff for BS13478.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22977323..22977787 17..481 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:47 Download gff for BS13478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18803045..18803509 17..481 100   Minus

BS13478.5prime Sequence

512 bp (470 high quality bases) assembled on 2006-10-13

> BS13478.5prime
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTTCCCCCTGCCAG
CCCGGCTATCTGCCCGACCATCGGGGTCGCTGTCGGGAAATCTGGTGAAA
GCTTTCTAGACC

BS13478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-PA 480 CG17244-RA 1..422 17..438 2110 100 Plus
CG17244-PA 480 CG17244-RA 423..480 441..498 265 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 895 CG17244-RB 39..518 17..498 2355 99.4 Plus
CG17244-RA 633 CG17244-RA 39..518 17..498 2355 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22977308..22977787 17..498 2330 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 09:07:08 has no hits.

BS13478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:19 Download gff for BS13478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-PA 1..480 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:20 Download gff for BS13478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 31..518 10..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:45 Download gff for BS13478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 31..518 10..498 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:45 Download gff for BS13478.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22977300..22977787 10..498 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:20 Download gff for BS13478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18803022..18803509 10..498 98   Plus

BS13478.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637472

> BS13478.complete
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTCCCCTGCCAGCC
CGGCTATCTGCCCGACCATCGTGGTCGCTGTCGGGAAATCTGGTGAAAGC
TTTCTAGACCAT

BS13478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 480 CG17244-PB 1..480 17..496 2400 100 Plus
CG17244-RA 480 CG17244-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 895 CG17244-RB 39..518 17..496 2400 100 Plus
CG17244-RA 633 CG17244-RA 39..518 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22977308..22977787 17..496 2400 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:02:36 has no hits.

BS13478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:57 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:32 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 30..517 10..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:49 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 39..517 17..495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:57 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 30..517 10..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:33 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 39..517 17..495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:33 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22977308..22977786 17..495 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:49 Download gff for BS13478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18803030..18803508 17..495 100   Plus

BS13478.pep Sequence

Translation from 16 to 495

> BS13478.pep
MKRFLVALLAALLVAAVQGGILGRIFHRESTSTTTSTTTTTTEEPRRPFY
INNNIPEIPKDCVAQFKCKKKLANVQAPKPCVKYCLHRITCPNNQTSPVQ
PNQCVDLDEQQVLAVHEANTEPPVAGQTTTEKTMMVAMIDFPCQPGYLPD
HRGRCREIW*

BS13478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-PB 159 CG17244-PB 1..159 1..159 856 100 Plus
CG17244-PA 159 CG17244-PA 1..159 1..159 856 100 Plus