Clone Sequence Records
BS13478.3prime Sequence
482 bp (473 high quality bases) assembled on 2006-10-13
> BS13478.3prime
ATGGTCTAGAAAGCTTTCACCAGATTTCCCGACAGCGACCACGATGGTCG
GGCAGATAGCCGGGCTGGCAGGGGAAGTCGATCATGGCCACCATCATGGT
CTTCTCGGTGGTGGTTTGGCCGGCGACCGGAGGCTCCGTGTTTGCCTCGT
GGACGGCCAGCACCTGTTGCTCGTCGAGATCGACACACTGGTTGGGCTGA
ACGGGACTGGTCTGGTTATTGGGACAGGTGATCCTGTGCAGGCAGTATTT
CACACACGGTTTTGGAGCCTGAACATTCGCCAGCTTCTTTTTGCACTTGA
ACTGCGCCACACAGTCCTTCGGGATTTCGGGAATATTGTTGTTGATGTAG
AAGGGTCGGCGGGGCTCCTCTGTGGTCGTCGTAGTTGTGCTGGTTGTTGT
GGAGGTGGACTCCCTGTGGAAAATTCTGCCCAGAATTCCGCCCTGGACGG
CGGCTACCAGCAGAGCGGCCAATAAGGCCACA
BS13478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-PA | 480 | CG17244-RA | 15..480 | 482..17 | 2330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 895 | CG17244-RB | 53..518 | 482..17 | 2330 | 100 | Minus |
CG17244-RA | 633 | CG17244-RA | 53..518 | 482..17 | 2330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22977322..22977787 | 482..17 | 2330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:51:07 has no hits.
BS13478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:19 Download gff for
BS13478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-PA | 16..480 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:47 Download gff for
BS13478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 54..518 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:42 Download gff for
BS13478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 54..518 | 17..481 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:42 Download gff for
BS13478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22977323..22977787 | 17..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:47 Download gff for
BS13478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18803045..18803509 | 17..481 | 100 | | Minus |
BS13478.5prime Sequence
512 bp (470 high quality bases) assembled on 2006-10-13
> BS13478.5prime
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTTCCCCCTGCCAG
CCCGGCTATCTGCCCGACCATCGGGGTCGCTGTCGGGAAATCTGGTGAAA
GCTTTCTAGACC
BS13478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-PA | 480 | CG17244-RA | 1..422 | 17..438 | 2110 | 100 | Plus |
CG17244-PA | 480 | CG17244-RA | 423..480 | 441..498 | 265 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 895 | CG17244-RB | 39..518 | 17..498 | 2355 | 99.4 | Plus |
CG17244-RA | 633 | CG17244-RA | 39..518 | 17..498 | 2355 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22977308..22977787 | 17..498 | 2330 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:08 has no hits.
BS13478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:19 Download gff for
BS13478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-PA | 1..480 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:20 Download gff for
BS13478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 31..518 | 10..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:45 Download gff for
BS13478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 31..518 | 10..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:45 Download gff for
BS13478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22977300..22977787 | 10..498 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:20 Download gff for
BS13478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18803022..18803509 | 10..498 | 98 | | Plus |
BS13478.complete Sequence
512 bp assembled on 2006-11-01
GenBank Submission: FJ637472
> BS13478.complete
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTCCCCTGCCAGCC
CGGCTATCTGCCCGACCATCGTGGTCGCTGTCGGGAAATCTGGTGAAAGC
TTTCTAGACCAT
BS13478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 480 | CG17244-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG17244-RA | 480 | CG17244-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 895 | CG17244-RB | 39..518 | 17..496 | 2400 | 100 | Plus |
CG17244-RA | 633 | CG17244-RA | 39..518 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22977308..22977787 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:02:36 has no hits.
BS13478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:57 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:32 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 30..517 | 10..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:49 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 39..517 | 17..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:57 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 30..517 | 10..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:33 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 39..517 | 17..495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:33 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22977308..22977786 | 17..495 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:49 Download gff for
BS13478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18803030..18803508 | 17..495 | 100 | | Plus |
BS13478.pep Sequence
Translation from 16 to 495
> BS13478.pep
MKRFLVALLAALLVAAVQGGILGRIFHRESTSTTTSTTTTTTEEPRRPFY
INNNIPEIPKDCVAQFKCKKKLANVQAPKPCVKYCLHRITCPNNQTSPVQ
PNQCVDLDEQQVLAVHEANTEPPVAGQTTTEKTMMVAMIDFPCQPGYLPD
HRGRCREIW*
BS13478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-PB | 159 | CG17244-PB | 1..159 | 1..159 | 856 | 100 | Plus |
CG17244-PA | 159 | CG17244-PA | 1..159 | 1..159 | 856 | 100 | Plus |