Clone BS13479 Report

Search the DGRC for BS13479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG12203-RA
Protein status:BS13479.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13479.3prime Sequence

582 bp (540 high quality bases) assembled on 2006-10-13

> BS13479.3prime
ATGGTCTAGAAAGCTTCTACTTGGTGGAGACGCGCGTGCGCTTGTTCCAG
GCAAAGTTGATGCCGTAGTTCTTGACGCGCTCCTTCTTGGGCTTCGCGGC
GCCGTCGACGTACCAGCGCCATCCGTTCCGTTCGCAGAACGTGATGGCCT
CCTCTGGGGATCCGAACTGCACGTTCATGTTGGACAATGGGTCGCCGCTG
GAGGCCCAGCCCATGAGCGGATTCTCCCAGCGCTCGCGGTTGTCGAACTC
GATTTGCCAGGTGTTCACGTTATCGGTGCCGCTCTGCATTGCGTTCTTGG
GCGGAATATGGATGCGCACACGGCGCTCCCGAATGTGCTCCTCCGGAACG
CCGCTGATCGGGCTGAGATTGACGGCAGTCGGCACGGTGATCTTGCCACT
CAGCTTGTTGCGCTGCTCCAGCTCTTCGGGGCGGGCCAGGGCCGTCTTGG
GGTCCAGCGGACCGCCGTCCGTGGCGGTGGATGCCCAGCGGGCAGCGGCT
GCCCTGTTGGCCTGGTACAGCTGCAGGGAGGCGGTGCTTCTGCACATCAC
TTGGCGGAGGGCCGAACTGTCGACTGATACCT

BS13479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-PA 552 CG12203-RA 4..552 565..17 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-RA 768 CG12203-RA 120..673 565..12 2755 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19492677..19492997 518..198 1605 100 Minus
X 23542271 X 19493052..19493242 202..12 940 99.5 Minus
X 23542271 X 19492540..19492589 565..516 250 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:47:07 has no hits.

BS13479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:19 Download gff for BS13479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12203-PA 2..552 17..566 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:54 Download gff for BS13479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 111..673 12..575 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:09 Download gff for BS13479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 111..673 12..575 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:09 Download gff for BS13479.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19492531..19492586 519..575 93 -> Minus
X 19492677..19492997 198..518 100 -> Minus
X 19493057..19493242 12..197 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:54 Download gff for BS13479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19386564..19386619 519..575 93 -> Minus
arm_X 19386710..19387030 198..518 100 -> Minus
arm_X 19387090..19387275 12..197 99   Minus

BS13479.5prime Sequence

560 bp (508 high quality bases) assembled on 2006-10-13

> BS13479.5prime
GAAGTTATCAGTCGACATGTCGGCCCTCCGCCAAGTGATGTGCAGAAGCA
CCGCCTCCCTGCAGCTGTACCAGGCCAACAGGGCAGCCGCTGCCCGCTGG
GCATCCACCGCCACGGACGGCGGTCCGCTGGACCCCAAGACGGCCCTGGC
CCGCCCCGAAGAGCTGGAGCAGCGCAACAAGCTGAGTGGCAAGATCACCG
TGCCGACTGCCGTCAATCTCAGCCCGATCAGCGGCGTTCCGGAGGAGCAC
ATTCGGGAGCGCCGTGTGCGCATCCATATTCCGCCCAAGAACGCAATGCA
GAGCGGCACCGATAACGTGAACACCTGGCAAATCGAGTTCGACAACCGCG
AGCGCTGGGAGAATCCGCTCATGGGCTGGGCCTCCAGCGGCGACCCATTG
TCCAACATGAACGTGCAGTTCGGATCCCCAGAGGAGGCCATCACGTTCTG
CGAACGGAACGGATGGCGCTGGTACGTCGACGGCGCCGCGAAGCCCAAGA
AGGAGCGCGTCAAGAACTACGGCATCAACTTTGCCTGGAACAAGCGCACG
CGCGTCTCCA

BS13479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-PA 552 CG12203-RA 1..544 17..560 2720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-RA 768 CG12203-RA 113..660 13..560 2725 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19492677..19492997 67..387 1605 100 Plus
X 23542271 X 19493052..19493229 383..560 890 100 Plus
X 23542271 X 19492533..19492589 13..69 270 98.2 Plus
Blast to na_te.dros performed on 2015-01-31 10:07:19 has no hits.

BS13479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:20 Download gff for BS13479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12203-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:22 Download gff for BS13479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 111..659 10..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:57 Download gff for BS13479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 111..659 10..559 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:57 Download gff for BS13479.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19492531..19492586 10..66 96 -> Plus
X 19492677..19492997 67..387 100 -> Plus
X 19493057..19493228 388..559 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:22 Download gff for BS13479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19386564..19386619 10..66 96 -> Plus
arm_X 19386710..19387030 67..387 100 -> Plus
arm_X 19387090..19387261 388..559 100   Plus

BS13479.complete Sequence

584 bp assembled on 2006-11-01

GenBank Submission: FJ637473

> BS13479.complete
GAAGTTATCAGTCGACATGTCGGCCCTCCGCCAAGTGATGTGCAGAAGCA
CCGCCTCCCTGCAGCTGTACCAGGCCAACAGGGCAGCCGCTGCCCGCTGG
GCATCCACCGCCACGGACGGCGGTCCGCTGGACCCCAAGACGGCCCTGGC
CCGCCCCGAAGAGCTGGAGCAGCGCAACAAGCTGAGTGGCAAGATCACCG
TGCCGACTGCCGTCAATCTCAGCCCGATCAGCGGCGTTCCGGAGGAGCAC
ATTCGGGAGCGCCGTGTGCGCATCCATATTCCGCCCAAGAACGCAATGCA
GAGCGGCACCGATAACGTGAACACCTGGCAAATCGAGTTCGACAACCGCG
AGCGCTGGGAGAATCCGCTCATGGGCTGGGCCTCCAGCGGCGACCCATTG
TCCAACATGAACGTGCAGTTCGGATCCCCAGAGGAGGCCATCACGTTCTG
CGAACGGAACGGATGGCGCTGGTACGTCGACGGCGCCGCGAAGCCCAAGA
AGGAGCGCGTCAAGAACTACGGCATCAACTTTGCCTGGAACAAGCGCACG
CGCGTCTCCACCAAGTAGAAGCTTTCTAGACCAT

BS13479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-RA 552 CG12203-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-RA 768 CG12203-RA 113..673 13..573 2775 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19492677..19492997 67..387 1605 100 Plus
X 23542271 X 19493052..19493242 383..573 940 99.5 Plus
X 23542271 X 19492533..19492589 13..69 270 98.2 Plus
Blast to na_te.dros performed on 2014-11-27 07:54:12 has no hits.

BS13479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:58 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:34 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 109..671 10..573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:01 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 117..668 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:58 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 109..671 10..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:57 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
CG12203-RA 117..668 17..568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:57 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
X 19492537..19492586 17..66 100 -> Plus
X 19492677..19492997 67..387 100 -> Plus
X 19493057..19493237 388..568 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:01 Download gff for BS13479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19386570..19386619 17..66 100 -> Plus
arm_X 19386710..19387030 67..387 100 -> Plus
arm_X 19387090..19387270 388..568 100   Plus

BS13479.pep Sequence

Translation from 16 to 567

> BS13479.pep
MSALRQVMCRSTASLQLYQANRAAAARWASTATDGGPLDPKTALARPEEL
EQRNKLSGKITVPTAVNLSPISGVPEEHIRERRVRIHIPPKNAMQSGTDN
VNTWQIEFDNRERWENPLMGWASSGDPLSNMNVQFGSPEEAITFCERNGW
RWYVDGAAKPKKERVKNYGINFAWNKRTRVSTK*

BS13479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12203-PA 183 CG12203-PA 1..183 1..183 977 100 Plus