Clone Sequence Records
BS13479.3prime Sequence
582 bp (540 high quality bases) assembled on 2006-10-13
> BS13479.3prime
ATGGTCTAGAAAGCTTCTACTTGGTGGAGACGCGCGTGCGCTTGTTCCAG
GCAAAGTTGATGCCGTAGTTCTTGACGCGCTCCTTCTTGGGCTTCGCGGC
GCCGTCGACGTACCAGCGCCATCCGTTCCGTTCGCAGAACGTGATGGCCT
CCTCTGGGGATCCGAACTGCACGTTCATGTTGGACAATGGGTCGCCGCTG
GAGGCCCAGCCCATGAGCGGATTCTCCCAGCGCTCGCGGTTGTCGAACTC
GATTTGCCAGGTGTTCACGTTATCGGTGCCGCTCTGCATTGCGTTCTTGG
GCGGAATATGGATGCGCACACGGCGCTCCCGAATGTGCTCCTCCGGAACG
CCGCTGATCGGGCTGAGATTGACGGCAGTCGGCACGGTGATCTTGCCACT
CAGCTTGTTGCGCTGCTCCAGCTCTTCGGGGCGGGCCAGGGCCGTCTTGG
GGTCCAGCGGACCGCCGTCCGTGGCGGTGGATGCCCAGCGGGCAGCGGCT
GCCCTGTTGGCCTGGTACAGCTGCAGGGAGGCGGTGCTTCTGCACATCAC
TTGGCGGAGGGCCGAACTGTCGACTGATACCT
BS13479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-PA | 552 | CG12203-RA | 4..552 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-RA | 768 | CG12203-RA | 120..673 | 565..12 | 2755 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19492677..19492997 | 518..198 | 1605 | 100 | Minus |
X | 23542271 | X | 19493052..19493242 | 202..12 | 940 | 99.5 | Minus |
X | 23542271 | X | 19492540..19492589 | 565..516 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:47:07 has no hits.
BS13479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:19 Download gff for
BS13479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-PA | 2..552 | 17..566 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:54 Download gff for
BS13479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 111..673 | 12..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:09 Download gff for
BS13479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 111..673 | 12..575 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:09 Download gff for
BS13479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19492531..19492586 | 519..575 | 93 | -> | Minus |
X | 19492677..19492997 | 198..518 | 100 | -> | Minus |
X | 19493057..19493242 | 12..197 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:54 Download gff for
BS13479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19386564..19386619 | 519..575 | 93 | -> | Minus |
arm_X | 19386710..19387030 | 198..518 | 100 | -> | Minus |
arm_X | 19387090..19387275 | 12..197 | 99 | | Minus |
BS13479.5prime Sequence
560 bp (508 high quality bases) assembled on 2006-10-13
> BS13479.5prime
GAAGTTATCAGTCGACATGTCGGCCCTCCGCCAAGTGATGTGCAGAAGCA
CCGCCTCCCTGCAGCTGTACCAGGCCAACAGGGCAGCCGCTGCCCGCTGG
GCATCCACCGCCACGGACGGCGGTCCGCTGGACCCCAAGACGGCCCTGGC
CCGCCCCGAAGAGCTGGAGCAGCGCAACAAGCTGAGTGGCAAGATCACCG
TGCCGACTGCCGTCAATCTCAGCCCGATCAGCGGCGTTCCGGAGGAGCAC
ATTCGGGAGCGCCGTGTGCGCATCCATATTCCGCCCAAGAACGCAATGCA
GAGCGGCACCGATAACGTGAACACCTGGCAAATCGAGTTCGACAACCGCG
AGCGCTGGGAGAATCCGCTCATGGGCTGGGCCTCCAGCGGCGACCCATTG
TCCAACATGAACGTGCAGTTCGGATCCCCAGAGGAGGCCATCACGTTCTG
CGAACGGAACGGATGGCGCTGGTACGTCGACGGCGCCGCGAAGCCCAAGA
AGGAGCGCGTCAAGAACTACGGCATCAACTTTGCCTGGAACAAGCGCACG
CGCGTCTCCA
BS13479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-PA | 552 | CG12203-RA | 1..544 | 17..560 | 2720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-RA | 768 | CG12203-RA | 113..660 | 13..560 | 2725 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19492677..19492997 | 67..387 | 1605 | 100 | Plus |
X | 23542271 | X | 19493052..19493229 | 383..560 | 890 | 100 | Plus |
X | 23542271 | X | 19492533..19492589 | 13..69 | 270 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:07:19 has no hits.
BS13479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:20 Download gff for
BS13479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:22 Download gff for
BS13479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 111..659 | 10..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:57 Download gff for
BS13479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 111..659 | 10..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:57 Download gff for
BS13479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19492531..19492586 | 10..66 | 96 | -> | Plus |
X | 19492677..19492997 | 67..387 | 100 | -> | Plus |
X | 19493057..19493228 | 388..559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:22 Download gff for
BS13479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19386564..19386619 | 10..66 | 96 | -> | Plus |
arm_X | 19386710..19387030 | 67..387 | 100 | -> | Plus |
arm_X | 19387090..19387261 | 388..559 | 100 | | Plus |
BS13479.complete Sequence
584 bp assembled on 2006-11-01
GenBank Submission: FJ637473
> BS13479.complete
GAAGTTATCAGTCGACATGTCGGCCCTCCGCCAAGTGATGTGCAGAAGCA
CCGCCTCCCTGCAGCTGTACCAGGCCAACAGGGCAGCCGCTGCCCGCTGG
GCATCCACCGCCACGGACGGCGGTCCGCTGGACCCCAAGACGGCCCTGGC
CCGCCCCGAAGAGCTGGAGCAGCGCAACAAGCTGAGTGGCAAGATCACCG
TGCCGACTGCCGTCAATCTCAGCCCGATCAGCGGCGTTCCGGAGGAGCAC
ATTCGGGAGCGCCGTGTGCGCATCCATATTCCGCCCAAGAACGCAATGCA
GAGCGGCACCGATAACGTGAACACCTGGCAAATCGAGTTCGACAACCGCG
AGCGCTGGGAGAATCCGCTCATGGGCTGGGCCTCCAGCGGCGACCCATTG
TCCAACATGAACGTGCAGTTCGGATCCCCAGAGGAGGCCATCACGTTCTG
CGAACGGAACGGATGGCGCTGGTACGTCGACGGCGCCGCGAAGCCCAAGA
AGGAGCGCGTCAAGAACTACGGCATCAACTTTGCCTGGAACAAGCGCACG
CGCGTCTCCACCAAGTAGAAGCTTTCTAGACCAT
BS13479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-RA | 552 | CG12203-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-RA | 768 | CG12203-RA | 113..673 | 13..573 | 2775 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19492677..19492997 | 67..387 | 1605 | 100 | Plus |
X | 23542271 | X | 19493052..19493242 | 383..573 | 940 | 99.5 | Plus |
X | 23542271 | X | 19492533..19492589 | 13..69 | 270 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:54:12 has no hits.
BS13479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:58 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:34 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 109..671 | 10..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:01 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 117..668 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:58 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 109..671 | 10..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:57 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12203-RA | 117..668 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:57 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19492537..19492586 | 17..66 | 100 | -> | Plus |
X | 19492677..19492997 | 67..387 | 100 | -> | Plus |
X | 19493057..19493237 | 388..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:01 Download gff for
BS13479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19386570..19386619 | 17..66 | 100 | -> | Plus |
arm_X | 19386710..19387030 | 67..387 | 100 | -> | Plus |
arm_X | 19387090..19387270 | 388..568 | 100 | | Plus |
BS13479.pep Sequence
Translation from 16 to 567
> BS13479.pep
MSALRQVMCRSTASLQLYQANRAAAARWASTATDGGPLDPKTALARPEEL
EQRNKLSGKITVPTAVNLSPISGVPEEHIRERRVRIHIPPKNAMQSGTDN
VNTWQIEFDNRERWENPLMGWASSGDPLSNMNVQFGSPEEAITFCERNGW
RWYVDGAAKPKKERVKNYGINFAWNKRTRVSTK*
BS13479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12203-PA | 183 | CG12203-PA | 1..183 | 1..183 | 977 | 100 | Plus |