Clone Sequence Records
BS13480.3prime Sequence
591 bp (566 high quality bases) assembled on 2006-10-13
> BS13480.3prime
ATGGTCTAGAAAGCTTCTAGTCTCCGCGCAGAGCCTCCAGCTCGTCAGCA
GCCTCTTTCGAAATCCTGTGGTACTTGGCCACCGATGGTCGGTAGTAGTA
GGCCTGGTAATCATTGCGCTCCGACATCTTGCGACGTACTTCGTCCTCAA
GGAGTCGAATCTGGGCTTTTTCGTTCTCCTCGTAGAGATAGTGCAGGGAT
TTCTCGTAGTTTTGCTGATCCGAGTTCAAAATGTAGCGGGAAATAAAGCG
CGAGATGGGGTGCTTCTCGTACTCCCAGTGCTTGGGCTCATAGCCCTCGG
GAATCTCGGCGAGCTGCGCGGGTCCCACAAAGATGTTCGCGTAGAGAACC
AATGCGGTGACTGGGATGACGCCGAGCATTACGTAAAAGTGCAACAGATC
CTTGAACTTGTCCCACTGGAAGCGGGATGGCTTGATGATCATTTGGTGGT
GTCCATGATCGCCTCCCATTCTGCGCAGCTGTTGGTGCAGGGCATTCCGG
CACGCGGGCTCTTGCAGGACAGCCCGGTAGCTGGCGAACTTCGCCGCCGG
CGACAGCAAACGGCTCCAACCGACCATGTCGACTGATAACT
BS13480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9762-PA | 561 | l(3)neo18-RA | 1..561 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..635 | 577..15 | 2815 | 100 | Minus |
l(3)neo18-RA | 888 | CG9762-RA | 184..746 | 577..15 | 2815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 263..493 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 12137638..12137779 | 15..156 | 710 | 100 | Plus |
3L | 28110227 | 3L | 12137838..12137946 | 156..264 | 545 | 100 | Plus |
3L | 28110227 | 3L | 12138317..12138401 | 493..577 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:43:07 has no hits.
BS13480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:20 Download gff for
BS13480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:30 Download gff for
BS13480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..754 | 7..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:26 Download gff for
BS13480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..754 | 7..577 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:26 Download gff for
BS13480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137630..12137778 | 7..155 | 97 | <- | Plus |
3L | 12137838..12137944 | 156..262 | 100 | <- | Plus |
3L | 12138016..12138245 | 263..492 | 100 | <- | Plus |
3L | 12138317..12138404 | 493..578 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:30 Download gff for
BS13480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130730..12130878 | 7..155 | 97 | <- | Plus |
arm_3L | 12130938..12131044 | 156..262 | 100 | <- | Plus |
arm_3L | 12131116..12131345 | 263..492 | 100 | <- | Plus |
arm_3L | 12131417..12131504 | 493..578 | 96 | <- | Plus |
BS13480.5prime Sequence
571 bp (535 high quality bases) assembled on 2006-10-13
> BS13480.5prime
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGA
BS13480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9762-PA | 561 | l(3)neo18-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..627 | 17..571 | 2775 | 100 | Plus |
l(3)neo18-RA | 888 | CG9762-RA | 184..738 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 331..101 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12137646..12137779 | 571..438 | 670 | 100 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 438..330 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138401 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:14:10 has no hits.
BS13480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:20 Download gff for
BS13480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..554 | 17..570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:20 Download gff for
BS13480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..737 | 17..570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:47 Download gff for
BS13480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..737 | 17..570 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:47 Download gff for
BS13480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12138016..12138245 | 102..331 | 100 | <- | Minus |
3L | 12138317..12138404 | 14..101 | 97 | <- | Minus |
3L | 12137838..12137944 | 332..438 | 100 | <- | Minus |
3L | 12137647..12137778 | 439..570 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:20 Download gff for
BS13480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130938..12131044 | 332..438 | 100 | <- | Minus |
arm_3L | 12130747..12130878 | 439..570 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 102..331 | 100 | <- | Minus |
arm_3L | 12131417..12131504 | 14..101 | 97 | <- | Minus |
BS13480.complete Sequence
593 bp assembled on 2006-11-01
GenBank Submission: FJ637474
> BS13480.complete
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGAGACTAGAAGCTTTCTAGACCAT
BS13480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 561 | CG9762-PB | 1..561 | 17..577 | 2805 | 100 | Plus |
l(3)neo18-RA | 561 | CG9762-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..635 | 17..579 | 2815 | 100 | Plus |
l(3)neo18-RA | 888 | CG9762-RA | 184..746 | 17..579 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 331..101 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12137638..12137779 | 579..438 | 710 | 100 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 438..330 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138401 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:16:34 has no hits.
BS13480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:59 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:48 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..744 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:26 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..744 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:59 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..754 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:29 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..744 | 17..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:29 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12138016..12138245 | 102..331 | 100 | <- | Minus |
3L | 12138317..12138401 | 17..101 | 100 | | Minus |
3L | 12137640..12137778 | 439..577 | 100 | <- | Minus |
3L | 12137838..12137944 | 332..438 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:26 Download gff for
BS13480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130740..12130878 | 439..577 | 100 | <- | Minus |
arm_3L | 12130938..12131044 | 332..438 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 102..331 | 100 | <- | Minus |
arm_3L | 12131417..12131501 | 17..101 | 100 | | Minus |
BS13480.pep Sequence
Translation from 16 to 576
> BS13480.pep
MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP
SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH
WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK
MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD*
BS13480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-PB | 186 | CG9762-PB | 1..186 | 1..186 | 989 | 100 | Plus |
l(3)neo18-PA | 186 | CG9762-PA | 1..186 | 1..186 | 989 | 100 | Plus |