Clone BS13480 Report

Search the DGRC for BS13480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)neo18-RA
Protein status:BS13480.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13480.3prime Sequence

591 bp (566 high quality bases) assembled on 2006-10-13

> BS13480.3prime
ATGGTCTAGAAAGCTTCTAGTCTCCGCGCAGAGCCTCCAGCTCGTCAGCA
GCCTCTTTCGAAATCCTGTGGTACTTGGCCACCGATGGTCGGTAGTAGTA
GGCCTGGTAATCATTGCGCTCCGACATCTTGCGACGTACTTCGTCCTCAA
GGAGTCGAATCTGGGCTTTTTCGTTCTCCTCGTAGAGATAGTGCAGGGAT
TTCTCGTAGTTTTGCTGATCCGAGTTCAAAATGTAGCGGGAAATAAAGCG
CGAGATGGGGTGCTTCTCGTACTCCCAGTGCTTGGGCTCATAGCCCTCGG
GAATCTCGGCGAGCTGCGCGGGTCCCACAAAGATGTTCGCGTAGAGAACC
AATGCGGTGACTGGGATGACGCCGAGCATTACGTAAAAGTGCAACAGATC
CTTGAACTTGTCCCACTGGAAGCGGGATGGCTTGATGATCATTTGGTGGT
GTCCATGATCGCCTCCCATTCTGCGCAGCTGTTGGTGCAGGGCATTCCGG
CACGCGGGCTCTTGCAGGACAGCCCGGTAGCTGGCGAACTTCGCCGCCGG
CGACAGCAAACGGCTCCAACCGACCATGTCGACTGATAACT

BS13480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9762-PA 561 l(3)neo18-RA 1..561 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..635 577..15 2815 100 Minus
l(3)neo18-RA 888 CG9762-RA 184..746 577..15 2815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 263..493 1155 100 Plus
3L 28110227 3L 12137638..12137779 15..156 710 100 Plus
3L 28110227 3L 12137838..12137946 156..264 545 100 Plus
3L 28110227 3L 12138317..12138401 493..577 425 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:43:07 has no hits.

BS13480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:20 Download gff for BS13480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:30 Download gff for BS13480.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..754 7..577 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:26 Download gff for BS13480.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..754 7..577 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:26 Download gff for BS13480.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12137630..12137778 7..155 97 <- Plus
3L 12137838..12137944 156..262 100 <- Plus
3L 12138016..12138245 263..492 100 <- Plus
3L 12138317..12138404 493..578 96 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:30 Download gff for BS13480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130730..12130878 7..155 97 <- Plus
arm_3L 12130938..12131044 156..262 100 <- Plus
arm_3L 12131116..12131345 263..492 100 <- Plus
arm_3L 12131417..12131504 493..578 96 <- Plus

BS13480.5prime Sequence

571 bp (535 high quality bases) assembled on 2006-10-13

> BS13480.5prime
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGA

BS13480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9762-PA 561 l(3)neo18-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..627 17..571 2775 100 Plus
l(3)neo18-RA 888 CG9762-RA 184..738 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 331..101 1155 100 Minus
3L 28110227 3L 12137646..12137779 571..438 670 100 Minus
3L 28110227 3L 12137838..12137946 438..330 545 100 Minus
3L 28110227 3L 12138317..12138401 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:14:10 has no hits.

BS13480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:20 Download gff for BS13480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..554 17..570 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:20 Download gff for BS13480.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..737 17..570 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:47 Download gff for BS13480.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..737 17..570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:47 Download gff for BS13480.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12138016..12138245 102..331 100 <- Minus
3L 12138317..12138404 14..101 97 <- Minus
3L 12137838..12137944 332..438 100 <- Minus
3L 12137647..12137778 439..570 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:20 Download gff for BS13480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130938..12131044 332..438 100 <- Minus
arm_3L 12130747..12130878 439..570 100 <- Minus
arm_3L 12131116..12131345 102..331 100 <- Minus
arm_3L 12131417..12131504 14..101 97 <- Minus

BS13480.complete Sequence

593 bp assembled on 2006-11-01

GenBank Submission: FJ637474

> BS13480.complete
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGAGACTAGAAGCTTTCTAGACCAT

BS13480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 561 CG9762-PB 1..561 17..577 2805 100 Plus
l(3)neo18-RA 561 CG9762-PA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..635 17..579 2815 100 Plus
l(3)neo18-RA 888 CG9762-RA 184..746 17..579 2815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 331..101 1155 100 Minus
3L 28110227 3L 12137638..12137779 579..438 710 100 Minus
3L 28110227 3L 12137838..12137946 438..330 545 100 Minus
3L 28110227 3L 12138317..12138401 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:16:34 has no hits.

BS13480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:59 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:48 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..744 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:26 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..744 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:59 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..754 17..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:29 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..744 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:29 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12138016..12138245 102..331 100 <- Minus
3L 12138317..12138401 17..101 100   Minus
3L 12137640..12137778 439..577 100 <- Minus
3L 12137838..12137944 332..438 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:26 Download gff for BS13480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130740..12130878 439..577 100 <- Minus
arm_3L 12130938..12131044 332..438 100 <- Minus
arm_3L 12131116..12131345 102..331 100 <- Minus
arm_3L 12131417..12131501 17..101 100   Minus

BS13480.pep Sequence

Translation from 16 to 576

> BS13480.pep
MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP
SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH
WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK
MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD*

BS13480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-PB 186 CG9762-PB 1..186 1..186 989 100 Plus
l(3)neo18-PA 186 CG9762-PA 1..186 1..186 989 100 Plus