Clone BS13484 Report

Search the DGRC for BS13484

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG7829-RA
Protein status:BS13484.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13484.3prime Sequence

742 bp (680 high quality bases) assembled on 2006-10-13

> BS13484.3prime
ATGGTCTAGAAAGCTTTTACTTTGACTTATTCAAGACCTGGTCTAGCCAG
GGATGCAGTGCATCGAGGCGGGAGTAGACTCCCGGCTTGTCCGCCAGGGC
GCACCCCACTCCCCACGACACGATGCCCACCAGCTGCTCCCTCACCGACA
AGGGTCCACCGGAGTCCATCTGGCAGGCATCCGTGCCGCCCTTGAGGTAG
CCTGCACAGAGCATCCGATCCGTCACAGTTTTGCCCAGTAGGTTCCTGCA
GGCGGTCTGATTCACGATCGGCACTCGGGCATATCTCAGACTGTCCGAGG
GAGGACCATTCATGGACTTAAATCCCCAGCCGGCAATGGTGGCATAGGTG
CCTTCGGCTACTCTCTCTGGGTTTATGGGAATGGCCTTTACCTTTCTAGA
TAGTGTTAGGTTTTTGGTCAACCTGATGATACCGATGTCATAGTCCATGG
TCTTGGGATTGAAATTCTCGTGGACTTGCAGGTCAGCGACCGAGAACAGT
TCCCCATCTTTTCGGTAGCGCGACGTTCCGCCGACCTTAACTTTTAGCAG
GCGATGTGGCACTCCGTTCAGACAATGGCCAGCCGTTAGGATGGTGTGGT
TATTTATTATGGAGCCGCCACAATGGTGGATGCCGTACAGTTGGATGGAC
ACTATGTACGGAATGTTGGCGATATCGGCTGGGAAGCCACCGACTATGCG
TGGATCTGGGCGACTCTCCAGAGATAGACACCCAGAAGCCTG

BS13484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 762 CG7829-RA 37..762 742..17 3605 99.8 Minus
CG7829-PB 393 CG7829-RB 37..389 742..390 1740 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 976 CG7829-RA 73..798 742..17 3615 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29816916..29817292 17..393 1885 100 Plus
3R 32079331 3R 29817340..29817692 390..742 1750 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 17:42:13 has no hits.

BS13484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:22 Download gff for BS13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-PA 37..762 17..742 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:35 Download gff for BS13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 73..801 13..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:04 Download gff for BS13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 73..801 13..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:04 Download gff for BS13484.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29816913..29817290 13..391 99 <- Plus
3R 29817342..29817692 392..742 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:35 Download gff for BS13484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25643064..25643414 392..742 99   Plus
arm_3R 25642635..25643012 13..391 99 <- Plus

BS13484.5prime Sequence

756 bp (660 high quality bases) assembled on 2006-10-13

> BS13484.5prime
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGAGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCA

BS13484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 762 CG7829-RA 1..740 17..756 3650 99.7 Plus
CG7829-PB 393 CG7829-RB 1..389 17..405 1920 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 976 CG7829-RA 37..776 17..756 3670 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29817340..29817728 405..17 1930 99.7 Minus
3R 32079331 3R 29816938..29817292 756..402 1760 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 21:13:10 has no hits.

BS13484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:23 Download gff for BS13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-PA 1..739 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:45 Download gff for BS13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..775 5..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:00 Download gff for BS13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..775 5..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:00 Download gff for BS13484.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29816939..29817290 404..755 99 <- Minus
3R 29817342..29817726 19..403 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:45 Download gff for BS13484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25642661..25643012 404..755 99 <- Minus
arm_3R 25643064..25643448 19..403 99 -> Minus

BS13484.complete Sequence

794 bp assembled on 2006-11-01

GenBank Submission: FJ637476

> BS13484.complete
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGGGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCAGGTCTTGAATAAGTCAAAGTAAAAGCTTTCTAGACCAT

BS13484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 762 CG7829-PA 1..762 17..778 3795 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 976 CG7829-RA 37..798 17..778 3795 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29817340..29817728 405..17 1930 99.7 Minus
3R 32079331 3R 29816916..29817292 778..402 1885 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:20:29 has no hits.

BS13484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:32 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:39 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..801 5..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:40 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 37..796 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:32 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..801 5..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:40 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 37..796 17..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:40 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816918..29817290 404..776 100 <- Minus
3R 29817342..29817728 17..403 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:40 Download gff for BS13484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25642640..25643012 404..776 100 <- Minus
arm_3R 25643064..25643450 17..403 99   Minus

BS13484.pep Sequence

Translation from 16 to 777

> BS13484.pep
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKVKAIPINPERVAEGTYATIAG
WGFKSMNGPPSDSLRYARVPIVNQTACRNLLGKTVTDRMLCAGYLKGGTD
ACQMDSGGPLSVREQLVGIVSWGVGCALADKPGVYSRLDALHPWLDQVLN
KSK*

BS13484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 253 CG7829-PA 1..253 1..253 1349 100 Plus
kappaTry-PC 263 CG12388-PC 7..257 9..249 464 39.4 Plus
zetaTry-PA 280 CG12387-PA 29..277 18..249 435 41.4 Plus
Try29F-PD 267 CG9564-PD 23..264 9..248 434 41.5 Plus
Try29F-PC 267 CG9564-PC 23..264 9..248 434 41.5 Plus