Clone Sequence Records
BS13484.3prime Sequence
742 bp (680 high quality bases) assembled on 2006-10-13
> BS13484.3prime
ATGGTCTAGAAAGCTTTTACTTTGACTTATTCAAGACCTGGTCTAGCCAG
GGATGCAGTGCATCGAGGCGGGAGTAGACTCCCGGCTTGTCCGCCAGGGC
GCACCCCACTCCCCACGACACGATGCCCACCAGCTGCTCCCTCACCGACA
AGGGTCCACCGGAGTCCATCTGGCAGGCATCCGTGCCGCCCTTGAGGTAG
CCTGCACAGAGCATCCGATCCGTCACAGTTTTGCCCAGTAGGTTCCTGCA
GGCGGTCTGATTCACGATCGGCACTCGGGCATATCTCAGACTGTCCGAGG
GAGGACCATTCATGGACTTAAATCCCCAGCCGGCAATGGTGGCATAGGTG
CCTTCGGCTACTCTCTCTGGGTTTATGGGAATGGCCTTTACCTTTCTAGA
TAGTGTTAGGTTTTTGGTCAACCTGATGATACCGATGTCATAGTCCATGG
TCTTGGGATTGAAATTCTCGTGGACTTGCAGGTCAGCGACCGAGAACAGT
TCCCCATCTTTTCGGTAGCGCGACGTTCCGCCGACCTTAACTTTTAGCAG
GCGATGTGGCACTCCGTTCAGACAATGGCCAGCCGTTAGGATGGTGTGGT
TATTTATTATGGAGCCGCCACAATGGTGGATGCCGTACAGTTGGATGGAC
ACTATGTACGGAATGTTGGCGATATCGGCTGGGAAGCCACCGACTATGCG
TGGATCTGGGCGACTCTCCAGAGATAGACACCCAGAAGCCTG
BS13484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-PA | 762 | CG7829-RA | 37..762 | 742..17 | 3605 | 99.8 | Minus |
CG7829-PB | 393 | CG7829-RB | 37..389 | 742..390 | 1740 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 976 | CG7829-RA | 73..798 | 742..17 | 3615 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29816916..29817292 | 17..393 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 29817340..29817692 | 390..742 | 1750 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:42:13 has no hits.
BS13484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:22 Download gff for
BS13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-PA | 37..762 | 17..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:35 Download gff for
BS13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 73..801 | 13..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:04 Download gff for
BS13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 73..801 | 13..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:04 Download gff for
BS13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29816913..29817290 | 13..391 | 99 | <- | Plus |
3R | 29817342..29817692 | 392..742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:35 Download gff for
BS13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25643064..25643414 | 392..742 | 99 | | Plus |
arm_3R | 25642635..25643012 | 13..391 | 99 | <- | Plus |
BS13484.5prime Sequence
756 bp (660 high quality bases) assembled on 2006-10-13
> BS13484.5prime
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGAGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCA
BS13484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-PA | 762 | CG7829-RA | 1..740 | 17..756 | 3650 | 99.7 | Plus |
CG7829-PB | 393 | CG7829-RB | 1..389 | 17..405 | 1920 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 976 | CG7829-RA | 37..776 | 17..756 | 3670 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29817340..29817728 | 405..17 | 1930 | 99.7 | Minus |
3R | 32079331 | 3R | 29816938..29817292 | 756..402 | 1760 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:10 has no hits.
BS13484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:23 Download gff for
BS13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-PA | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:45 Download gff for
BS13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..775 | 5..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:00 Download gff for
BS13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..775 | 5..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:00 Download gff for
BS13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29816939..29817290 | 404..755 | 99 | <- | Minus |
3R | 29817342..29817726 | 19..403 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:45 Download gff for
BS13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25642661..25643012 | 404..755 | 99 | <- | Minus |
arm_3R | 25643064..25643448 | 19..403 | 99 | -> | Minus |
BS13484.complete Sequence
794 bp assembled on 2006-11-01
GenBank Submission: FJ637476
> BS13484.complete
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGGGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCAGGTCTTGAATAAGTCAAAGTAAAAGCTTTCTAGACCAT
BS13484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 762 | CG7829-PA | 1..762 | 17..778 | 3795 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 976 | CG7829-RA | 37..798 | 17..778 | 3795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29817340..29817728 | 405..17 | 1930 | 99.7 | Minus |
3R | 32079331 | 3R | 29816916..29817292 | 778..402 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:29 has no hits.
BS13484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:32 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:39 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..801 | 5..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:40 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 37..796 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:32 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..801 | 5..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:40 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 37..796 | 17..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:40 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29816918..29817290 | 404..776 | 100 | <- | Minus |
3R | 29817342..29817728 | 17..403 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:40 Download gff for
BS13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25642640..25643012 | 404..776 | 100 | <- | Minus |
arm_3R | 25643064..25643450 | 17..403 | 99 | | Minus |
BS13484.pep Sequence
Translation from 16 to 777
> BS13484.pep
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKVKAIPINPERVAEGTYATIAG
WGFKSMNGPPSDSLRYARVPIVNQTACRNLLGKTVTDRMLCAGYLKGGTD
ACQMDSGGPLSVREQLVGIVSWGVGCALADKPGVYSRLDALHPWLDQVLN
KSK*
BS13484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-PA | 253 | CG7829-PA | 1..253 | 1..253 | 1349 | 100 | Plus |
kappaTry-PC | 263 | CG12388-PC | 7..257 | 9..249 | 464 | 39.4 | Plus |
zetaTry-PA | 280 | CG12387-PA | 29..277 | 18..249 | 435 | 41.4 | Plus |
Try29F-PD | 267 | CG9564-PD | 23..264 | 9..248 | 434 | 41.5 | Plus |
Try29F-PC | 267 | CG9564-PC | 23..264 | 9..248 | 434 | 41.5 | Plus |