Clone Sequence Records
BS13489.3prime Sequence
661 bp (659 high quality bases) assembled on 2006-10-13
> BS13489.3prime
ATGGTCTAGAAAGCTTTCACAATATTCCGCATTTCTTGAGCACTATCTTT
CGCTTTCGGGCCACGCTGGAGCCATGGCCCTTCTTCGCCGGACGGAGGAC
GATGGTGCCGCTGCTGGACTTTGTGAAGGTCGGGCTGAAGGCGCTGATCG
TGGGCGTGCTGCTGTAAGGCGGATGGCTGGAGTTTTGCTGGTTTCCGGCC
ACCTGGTCGTAGCTCTGGGTCATTAGCTGATGGCACTTGGTGGCCAGGTA
GCGAAACACGGACGCCACGTTAATGTCCTCCTTGACGGAGGTGCGGATGA
GCCGGCAGTTGAGGAGCTTGGCCAGCGTCTCCACCTCGTCGGCCGTAACC
ACCGCCTGTTCGATAAGATCGATCTTGTTCTGCACAATCACTGTGGGTAT
CTCGTTGCACTCGTTCTCCACCTTGCGCTTCCAATCCTTGATCGCGTCGA
AGGATGCTCGATCCGTCGTCGAAAAGACCAGGACGGAAGCCTGGGCGCCG
CGGTAGTACGCCTTTGTGATGCAGTCGAACTCCTCCTGGCCGGCGGTGTC
CCACAGCATGATGCGCACATCCTCGCCGTCGATCTCGATCTGTCGCTCTA
GGAAGTCCACTCCAATCGTTTTCTTGTAGTCCTTCGTGAAAATGCCTTTG
CAATAGCGCTG
BS13489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2108-PA | 807 | Rab23-RA | 163..807 | 661..17 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab23-RA | 2267 | CG2108-RA | 446..1090 | 661..17 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5681231..5681875 | 17..661 | 3225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:35:05 has no hits.
BS13489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:24 Download gff for
BS13489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2108-PA | 163..807 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:58 Download gff for
BS13489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 446..1096 | 11..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:08 Download gff for
BS13489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 446..1096 | 11..661 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:08 Download gff for
BS13489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5681225..5681875 | 11..661 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:58 Download gff for
BS13489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1506947..1507597 | 11..661 | 99 | | Plus |
BS13489.5prime Sequence
707 bp (627 high quality bases) assembled on 2006-10-13
> BS13489.5prime
GAAGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTG
CTGCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGC
ATGCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAA
TGGCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTT
TCACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAG
ATCGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGG
CCAGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGG
CTTCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATC
AAGGATTGGAAGCGCAAGGTGGAGAACGAGTGCAACGAGATACCCACAGT
GATTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCG
ACGAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACC
TCCGTCAAGGAGGACATTAAACGTGGCGTCCGTGTTTCGCTACCTGGCCA
CCAAGTGCCATCAGCTAATGACCCAGAGCTACGACCAGGTGGCCGGAAAC
CAGCAAAACTCCAGCCATCCGCCTTACAGCAGCACGCCCACGATCAGCGC
CTTCAGC
BS13489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2108-PA | 807 | Rab23-RA | 1..554 | 17..570 | 2770 | 100 | Plus |
| CG2108-PA | 807 | Rab23-RA | 553..690 | 570..707 | 690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab23-RA | 2267 | CG2108-RA | 284..973 | 17..707 | 3430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5681348..5681918 | 707..136 | 2810 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5682620..5682741 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:14:45 has no hits.
BS13489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:24 Download gff for
BS13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2108-PA | 1..690 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:26 Download gff for
BS13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 284..973 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:53 Download gff for
BS13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 284..973 | 17..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:53 Download gff for
BS13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5681348..5681917 | 137..707 | 99 | <- | Minus |
| 3R | 5682622..5682741 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:26 Download gff for
BS13489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1507070..1507639 | 137..707 | 99 | <- | Minus |
| arm_3R | 1508344..1508463 | 17..136 | 100 | | Minus |
BS13489.complete Sequence
839 bp assembled on 2006-11-01
GenBank Submission: FJ637477
> BS13489.complete
GAAGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTG
CTGCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGC
ATGCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAA
TGGCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTT
TCACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAG
ATCGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGG
CCAGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGG
CTTCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATC
AAGGATTGGAAGCGCAAGGTGGAGAACGAGTGCAACGAGATACCCACAGT
GATTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCG
ACGAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACC
TCCGTCAAGGAGGACATTAACGTGGCGTCCGTGTTTCGCTACCTGGCCAC
CAAGTGCCATCAGCTAATGACCCAGAGCTACGACCAGGTGGCCGGAAACC
AGCAAAACTCCAGCCATCCGCCTTACAGCAGCACGCCCACGATCAGCGCC
TTCAGCCCGACCTTCACAAAGTCCAGCAGCGGCACCATCGTCCTCCGTCC
GGCGAAGAAGGGCCATGGCTCCAGCGTGGCCCGAAAGCGAAAGATAGTGC
TCAAGAAATGCGGAATATTGTGAAAGCTTTCTAGACCAT
BS13489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab23-RA | 807 | CG2108-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab23-RA | 2267 | CG2108-RA | 284..1090 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5681231..5681918 | 823..136 | 3440 | 100 | Minus |
| 3R | 32079331 | 3R | 5682620..5682741 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:22 has no hits.
BS13489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:47 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:18 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 276..1088 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:05 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 284..1089 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:48 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 276..1088 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:35 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab23-RA | 284..1089 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:35 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5681232..5681917 | 137..822 | 100 | <- | Minus |
| 3R | 5682622..5682741 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:05 Download gff for
BS13489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1506954..1507639 | 137..822 | 100 | <- | Minus |
| arm_3R | 1508344..1508463 | 17..136 | 100 | | Minus |
BS13489.pep Sequence
Translation from 16 to 822
> BS13489.pep
MRLIQTATGGAAASVLQTHSQAQYNYTSMREDDIELAIKVVIVGNGGVGK
SSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFD
CITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENECNEIPTVIVQNK
IDLIEQAVVTADEVETLAKLLNCRLIRTSVKEDINVASVFRYLATKCHQL
MTQSYDQVAGNQQNSSHPPYSSTPTISAFSPTFTKSSSGTIVLRPAKKGH
GSSVARKRKIVLKKCGIL*
BS13489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab23-PA | 268 | CG2108-PA | 1..268 | 1..268 | 1363 | 100 | Plus |
| Rab11-PA | 214 | CG5771-PA | 4..206 | 30..228 | 332 | 34 | Plus |
| Rab11-PB | 214 | CG5771-PB | 4..206 | 30..228 | 332 | 34 | Plus |
| Rab35-PB | 201 | CG9575-PB | 10..180 | 39..207 | 331 | 37.4 | Plus |
| Rab35-PD | 201 | CG9575-PD | 10..180 | 39..207 | 331 | 37.4 | Plus |
