Clone BS13490 Report

Search the DGRC for BS13490

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG2065-RA
Protein status:BS13490.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13490.3prime Sequence

495 bp (484 high quality bases) assembled on 2006-10-13

> BS13490.3prime
ATGGTCTAGAAAGCTTTTAATCAACTTTGGTTGAATTCACGCCGGTCCAC
TTCTCGCTCTCCGCCCAGAGGAACTTTCCAGTCTTGTCGTCCTGGGCAGC
TGCGGACACTTCCTTTGGCTGGCAGTCGCTAAAGTAGAGCCCGGAAACAT
CCTTTAGTGCAGGATCCAGGGCTGCGTAGAGAGTGGTCTGCGCTCCATTG
CGAGGGGTTTTGAAGAGTACCCACAGGAGGGGCTTGAGCAGTAGCTGTGC
AAAGGGGTGTTTCAGGAACTTCCAATTCCTCGACAGCTCCGTGTCCACGG
CACCGGGATGTAGGGAGTTGGTTGTGACCCCCGTTCCCTCCAGGCGCTTG
GCCAATTCCCGGGTGAACAGGACGTTGGCCAGCTTGCTCTGACTATAGGC
ACCGATTCTGCTGTACGACTTTTCACTGTTTAGGTCGGCAGTTTTAATGA
AACCTTGGGTGTGCACCAGGCTGGAAACGTTCACGATGCGACTGG

BS13490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-PA 903 CG2065-RA 425..903 495..17 2395 100 Minus
CG2064-PA 993 CG2064-RA 616..662 391..345 210 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 610..1088 495..17 2395 100 Minus
CG2065-RA 1204 CG2065-RA 581..1059 495..17 2395 100 Minus
CG2064-RA 1210 CG2064-RA 716..844 400..272 300 82.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664585..7664835 495..245 1255 100 Minus
2R 25286936 2R 7664896..7665124 245..17 1145 100 Minus
2R 25286936 2R 7666792..7666920 400..272 300 82.2 Minus
2R 25286936 2R 7662724..7662878 437..283 235 76.8 Minus
2R 25286936 2R 7667052..7667207 197..42 180 74.4 Minus
Blast to na_te.dros performed on 2015-02-10 16:35:16 has no hits.

BS13490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:25 Download gff for BS13490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-PA 425..903 17..495 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:02 Download gff for BS13490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 581..1061 13..495 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:10 Download gff for BS13490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 581..1061 13..495 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:10 Download gff for BS13490.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7664585..7664834 246..495 100 -> Minus
2R 7664896..7665126 13..245 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:02 Download gff for BS13490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3552090..3552339 246..495 100 -> Minus
arm_2R 3552401..3552631 13..245 99   Minus

BS13490.5prime Sequence

512 bp (477 high quality bases) assembled on 2006-10-13

> BS13490.5prime
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
AACTAAACAGTG

BS13490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-PA 903 CG2065-RA 1..496 17..512 2455 99.7 Plus
CG2064-PA 993 CG2064-RA 115..178 44..107 245 95.3 Plus
CG2064-PA 993 CG2064-RA 205..335 134..264 230 87 Plus
CG30491-PA 996 CG30491-RA 125..185 48..108 230 95 Plus
CG3842-PA 1221 CG3842-RA 246..275 82..111 150 100 Plus
CG3842-PB 1221 CG3842-RB 246..275 82..111 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 184..681 15..512 2475 99.8 Plus
CG2065-RA 1204 CG2065-RA 155..652 15..512 2475 99.8 Plus
CG2064-RA 1210 CG2064-RA 195..630 15..450 1055 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664038..7664296 15..273 1295 100 Plus
2R 25286936 2R 7664352..7664509 273..430 790 100 Plus
2R 25286936 2R 7666151..7666400 15..264 710 85.6 Plus
2R 25286936 2R 7655578..7655712 17..151 435 88.1 Plus
2R 25286936 2R 7664573..7664656 429..512 405 98.8 Plus
2R 25286936 2R 7662173..7662429 17..273 340 75.5 Plus
2R 25286936 2R 7666475..7666630 275..430 315 80.1 Plus
X 23542271 X 6342357..6342458 56..157 255 83.3 Plus
2R 25286936 2R 7657419..7657555 17..153 250 78.8 Plus
X 23542271 X 6342606..6342755 305..454 180 74.7 Plus
Blast to na_te.dros performed on 2015-02-03 06:34:58 has no hits.

BS13490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:25 Download gff for BS13490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-PA 1..496 17..512 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:13 Download gff for BS13490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..652 15..512 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:38 Download gff for BS13490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..652 15..512 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:38 Download gff for BS13490.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7664038..7664296 15..273 100 -> Plus
2R 7664353..7664509 274..430 100 -> Plus
2R 7664575..7664656 431..512 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:13 Download gff for BS13490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3551543..3551801 15..273 100 -> Plus
arm_2R 3551858..3552014 274..430 100 -> Plus
arm_2R 3552080..3552161 431..512 98   Plus

BS13490.complete Sequence

935 bp assembled on 2006-11-01

GenBank Submission: FJ637478

> BS13490.complete
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
ACCTAAACAGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGC
AAGCTGGCCAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGG
AACGGGGGTCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGC
TGTCGAGGAATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTC
AAGCCCCTCCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGAC
CACTCTCTACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCT
ACTTTAGCGACTGCCAGCCAAAGGAAGTGTCCGCAGCTGCCCAGGACGAC
AAGACTGGAAAGTTCCTCTGGGCGGAGAGCGAGAAGTGGACCGGCGTGAA
TTCAACCAAAGTTGATTAAAAGCTTTCTAGACCAT

BS13490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 903 CG2065-PB 1..903 17..919 4515 100 Plus
CG2065-RA 903 CG2065-PA 1..903 17..919 4515 100 Plus
CG2064-RA 993 CG2064-PA 86..735 15..664 1255 79.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 184..1088 15..919 4525 100 Plus
CG2065-RA 1204 CG2065-RA 155..1059 15..919 4525 100 Plus
CG2064-RA 1210 CG2064-RA 195..844 15..664 1255 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664573..7664835 429..691 1315 100 Plus
2R 25286936 2R 7664038..7664296 15..273 1295 100 Plus
2R 25286936 2R 7664896..7665124 691..919 1145 100 Plus
2R 25286936 2R 7664352..7664509 273..430 790 100 Plus
2R 25286936 2R 7666151..7666400 15..264 710 85.6 Plus
2R 25286936 2R 7655578..7655712 17..151 435 88.1 Plus
2R 25286936 2R 7662173..7662429 17..273 340 75.5 Plus
2R 25286936 2R 7666475..7666630 275..430 315 80.1 Plus
2R 25286936 2R 7666792..7666920 536..664 300 82.2 Plus
X 23542271 X 6342357..6342458 56..157 255 83.3 Plus
2R 25286936 2R 7657419..7657555 17..153 250 78.8 Plus
Blast to na_te.dros performed on 2014-11-27 19:56:48 has no hits.

BS13490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:49 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:20 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..1061 15..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:16 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 157..1057 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:49 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..1061 15..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:20 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 157..1057 17..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:20 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7664040..7664296 17..273 100 -> Plus
2R 7664353..7664509 274..430 100 -> Plus
2R 7664575..7664834 431..690 100 -> Plus
2R 7664896..7665122 691..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:16 Download gff for BS13490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3551545..3551801 17..273 100 -> Plus
arm_2R 3551858..3552014 274..430 100 -> Plus
arm_2R 3552080..3552339 431..690 100 -> Plus
arm_2R 3552401..3552627 691..917 100   Plus

BS13490.pep Sequence

Translation from 16 to 918

> BS13490.pep
MQGGQFTKQTDETGKVFIVTGANTGIGKETVLEIAKRGGTVYMACRDMNR
CEKARQDIIRETNNQNIFSRELDLSSLESIRKFAAGFKKEQDKLHVLINN
AGVMHCPRTLTKDGFEMQLGVNHMGHFLLTHLLLDVLKKTAPSRIVNVSS
LVHTQGFIKTADLNSEKSYSRIGAYSQSKLANVLFTRELAKRLEGTGVTT
NSLHPGAVDTELSRNWKFLKHPFAQLLLKPLLWVLFKTPRNGAQTTLYAA
LDPALKDVSGLYFSDCQPKEVSAAAQDDKTGKFLWAESEKWTGVNSTKVD
*

BS13490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-PB 300 CG2065-PB 1..300 1..300 1551 100 Plus
CG2065-PA 300 CG2065-PA 1..300 1..300 1551 100 Plus
CG2064-PA 330 CG2064-PA 30..329 1..300 1217 76.3 Plus
CG2070-PB 325 CG2070-PB 30..324 1..295 1105 71.2 Plus
CG2070-PA 325 CG2070-PA 30..324 1..295 1105 71.2 Plus