Clone Sequence Records
BS13490.3prime Sequence
495 bp (484 high quality bases) assembled on 2006-10-13
> BS13490.3prime
ATGGTCTAGAAAGCTTTTAATCAACTTTGGTTGAATTCACGCCGGTCCAC
TTCTCGCTCTCCGCCCAGAGGAACTTTCCAGTCTTGTCGTCCTGGGCAGC
TGCGGACACTTCCTTTGGCTGGCAGTCGCTAAAGTAGAGCCCGGAAACAT
CCTTTAGTGCAGGATCCAGGGCTGCGTAGAGAGTGGTCTGCGCTCCATTG
CGAGGGGTTTTGAAGAGTACCCACAGGAGGGGCTTGAGCAGTAGCTGTGC
AAAGGGGTGTTTCAGGAACTTCCAATTCCTCGACAGCTCCGTGTCCACGG
CACCGGGATGTAGGGAGTTGGTTGTGACCCCCGTTCCCTCCAGGCGCTTG
GCCAATTCCCGGGTGAACAGGACGTTGGCCAGCTTGCTCTGACTATAGGC
ACCGATTCTGCTGTACGACTTTTCACTGTTTAGGTCGGCAGTTTTAATGA
AACCTTGGGTGTGCACCAGGCTGGAAACGTTCACGATGCGACTGG
BS13490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-PA | 903 | CG2065-RA | 425..903 | 495..17 | 2395 | 100 | Minus |
CG2064-PA | 993 | CG2064-RA | 616..662 | 391..345 | 210 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 610..1088 | 495..17 | 2395 | 100 | Minus |
CG2065-RA | 1204 | CG2065-RA | 581..1059 | 495..17 | 2395 | 100 | Minus |
CG2064-RA | 1210 | CG2064-RA | 716..844 | 400..272 | 300 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664585..7664835 | 495..245 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 7664896..7665124 | 245..17 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 7666792..7666920 | 400..272 | 300 | 82.2 | Minus |
2R | 25286936 | 2R | 7662724..7662878 | 437..283 | 235 | 76.8 | Minus |
2R | 25286936 | 2R | 7667052..7667207 | 197..42 | 180 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:35:16 has no hits.
BS13490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:25 Download gff for
BS13490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-PA | 425..903 | 17..495 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:02 Download gff for
BS13490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 581..1061 | 13..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:10 Download gff for
BS13490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 581..1061 | 13..495 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:10 Download gff for
BS13490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664585..7664834 | 246..495 | 100 | -> | Minus |
2R | 7664896..7665126 | 13..245 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:02 Download gff for
BS13490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3552090..3552339 | 246..495 | 100 | -> | Minus |
arm_2R | 3552401..3552631 | 13..245 | 99 | | Minus |
BS13490.5prime Sequence
512 bp (477 high quality bases) assembled on 2006-10-13
> BS13490.5prime
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
AACTAAACAGTG
BS13490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-PA | 903 | CG2065-RA | 1..496 | 17..512 | 2455 | 99.7 | Plus |
CG2064-PA | 993 | CG2064-RA | 115..178 | 44..107 | 245 | 95.3 | Plus |
CG2064-PA | 993 | CG2064-RA | 205..335 | 134..264 | 230 | 87 | Plus |
CG30491-PA | 996 | CG30491-RA | 125..185 | 48..108 | 230 | 95 | Plus |
CG3842-PA | 1221 | CG3842-RA | 246..275 | 82..111 | 150 | 100 | Plus |
CG3842-PB | 1221 | CG3842-RB | 246..275 | 82..111 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 184..681 | 15..512 | 2475 | 99.8 | Plus |
CG2065-RA | 1204 | CG2065-RA | 155..652 | 15..512 | 2475 | 99.8 | Plus |
CG2064-RA | 1210 | CG2064-RA | 195..630 | 15..450 | 1055 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664038..7664296 | 15..273 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 7664352..7664509 | 273..430 | 790 | 100 | Plus |
2R | 25286936 | 2R | 7666151..7666400 | 15..264 | 710 | 85.6 | Plus |
2R | 25286936 | 2R | 7655578..7655712 | 17..151 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7664573..7664656 | 429..512 | 405 | 98.8 | Plus |
2R | 25286936 | 2R | 7662173..7662429 | 17..273 | 340 | 75.5 | Plus |
2R | 25286936 | 2R | 7666475..7666630 | 275..430 | 315 | 80.1 | Plus |
X | 23542271 | X | 6342357..6342458 | 56..157 | 255 | 83.3 | Plus |
2R | 25286936 | 2R | 7657419..7657555 | 17..153 | 250 | 78.8 | Plus |
X | 23542271 | X | 6342606..6342755 | 305..454 | 180 | 74.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:34:58 has no hits.
BS13490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:25 Download gff for
BS13490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-PA | 1..496 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:13 Download gff for
BS13490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..652 | 15..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:38 Download gff for
BS13490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..652 | 15..512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:38 Download gff for
BS13490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664038..7664296 | 15..273 | 100 | -> | Plus |
2R | 7664353..7664509 | 274..430 | 100 | -> | Plus |
2R | 7664575..7664656 | 431..512 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:13 Download gff for
BS13490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3551543..3551801 | 15..273 | 100 | -> | Plus |
arm_2R | 3551858..3552014 | 274..430 | 100 | -> | Plus |
arm_2R | 3552080..3552161 | 431..512 | 98 | | Plus |
BS13490.complete Sequence
935 bp assembled on 2006-11-01
GenBank Submission: FJ637478
> BS13490.complete
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
ACCTAAACAGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGC
AAGCTGGCCAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGG
AACGGGGGTCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGC
TGTCGAGGAATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTC
AAGCCCCTCCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGAC
CACTCTCTACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCT
ACTTTAGCGACTGCCAGCCAAAGGAAGTGTCCGCAGCTGCCCAGGACGAC
AAGACTGGAAAGTTCCTCTGGGCGGAGAGCGAGAAGTGGACCGGCGTGAA
TTCAACCAAAGTTGATTAAAAGCTTTCTAGACCAT
BS13490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 903 | CG2065-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
CG2065-RA | 903 | CG2065-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
CG2064-RA | 993 | CG2064-PA | 86..735 | 15..664 | 1255 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 184..1088 | 15..919 | 4525 | 100 | Plus |
CG2065-RA | 1204 | CG2065-RA | 155..1059 | 15..919 | 4525 | 100 | Plus |
CG2064-RA | 1210 | CG2064-RA | 195..844 | 15..664 | 1255 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664573..7664835 | 429..691 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 7664038..7664296 | 15..273 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 7664896..7665124 | 691..919 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 7664352..7664509 | 273..430 | 790 | 100 | Plus |
2R | 25286936 | 2R | 7666151..7666400 | 15..264 | 710 | 85.6 | Plus |
2R | 25286936 | 2R | 7655578..7655712 | 17..151 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7662173..7662429 | 17..273 | 340 | 75.5 | Plus |
2R | 25286936 | 2R | 7666475..7666630 | 275..430 | 315 | 80.1 | Plus |
2R | 25286936 | 2R | 7666792..7666920 | 536..664 | 300 | 82.2 | Plus |
X | 23542271 | X | 6342357..6342458 | 56..157 | 255 | 83.3 | Plus |
2R | 25286936 | 2R | 7657419..7657555 | 17..153 | 250 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:56:48 has no hits.
BS13490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:49 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:20 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..1061 | 15..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:16 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 157..1057 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:49 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..1061 | 15..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:20 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 157..1057 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:20 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664040..7664296 | 17..273 | 100 | -> | Plus |
2R | 7664353..7664509 | 274..430 | 100 | -> | Plus |
2R | 7664575..7664834 | 431..690 | 100 | -> | Plus |
2R | 7664896..7665122 | 691..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:16 Download gff for
BS13490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3551545..3551801 | 17..273 | 100 | -> | Plus |
arm_2R | 3551858..3552014 | 274..430 | 100 | -> | Plus |
arm_2R | 3552080..3552339 | 431..690 | 100 | -> | Plus |
arm_2R | 3552401..3552627 | 691..917 | 100 | | Plus |
BS13490.pep Sequence
Translation from 16 to 918
> BS13490.pep
MQGGQFTKQTDETGKVFIVTGANTGIGKETVLEIAKRGGTVYMACRDMNR
CEKARQDIIRETNNQNIFSRELDLSSLESIRKFAAGFKKEQDKLHVLINN
AGVMHCPRTLTKDGFEMQLGVNHMGHFLLTHLLLDVLKKTAPSRIVNVSS
LVHTQGFIKTADLNSEKSYSRIGAYSQSKLANVLFTRELAKRLEGTGVTT
NSLHPGAVDTELSRNWKFLKHPFAQLLLKPLLWVLFKTPRNGAQTTLYAA
LDPALKDVSGLYFSDCQPKEVSAAAQDDKTGKFLWAESEKWTGVNSTKVD
*
BS13490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-PB | 300 | CG2065-PB | 1..300 | 1..300 | 1551 | 100 | Plus |
CG2065-PA | 300 | CG2065-PA | 1..300 | 1..300 | 1551 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 30..329 | 1..300 | 1217 | 76.3 | Plus |
CG2070-PB | 325 | CG2070-PB | 30..324 | 1..295 | 1105 | 71.2 | Plus |
CG2070-PA | 325 | CG2070-PA | 30..324 | 1..295 | 1105 | 71.2 | Plus |