Clone Sequence Records
BS13493.complete Sequence
1448 bp assembled on 2009-12-07
GenBank Submission: KX800614
> BS13493.complete
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTG
GGCATTACGTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCG
CGAGTCCGTTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCT
TTGCAATGGAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAG
ACGCCACAGAGTTTCCTCGGAATCTGCGGTGTGCTCAGCCAGGGCATGTC
GGGCGTGACCCTTATTTATATGCTGCTGGGATTCCTTGGATATCTGCGTT
ACGGTTCCGCCACCGGTGAGAGCATCACCCTGAATCTGCCCATCGAGGAG
TGGCCCGCCCAGACGGTGAAGGTGCTCATTTCCCTGGCCGTATATTGCAC
ATTTGGACTGCAGTTCTTTGTGTGCCTGGAGATCATCTGGGATGGCATTA
AGGAGAAGTGCAAGAAGCGCCCGACATTGGTCAACTATGTGCTGCGCACA
GTCCTGGTGACCGCTGCCGTTGTTCTGGCCGTGGCTGTTCCTACAATTGG
CCCATTTATGGGTCTCATCGGTGCCTTCTGCTTCTCCATTCTGGGATTGA
TCTTCCCGGTGGTCATTGAGTTGATTGTCCATTGGGAGAGTGGCTTTGGT
AAATACAACTGGATCCTGTGGAAGAACGCAATCATCACGTTGTGCGGCAT
TGGCGCTCTTGTTTTCGGCACCCAGGCAGCCATCAAGGATATTGTGAAAG
CCTACAGTAATAATGAAAACGTCGGAGAATAGAAGCTTTCTAGACCAT
BS13493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RD | 1416 | CG3424-PD | 1..1416 | 17..1432 | 7080 | 100 | Plus |
path-RA | 1416 | CG3424-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
path-RE | 1377 | CG3424-PE | 42..1377 | 97..1432 | 6680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RD | 3122 | CG3424-RD | 584..2000 | 17..1433 | 7085 | 100 | Plus |
path-RA | 2772 | CG3424-RA | 234..1650 | 17..1433 | 7085 | 100 | Plus |
path-RE | 2532 | CG3424-RE | 74..1410 | 97..1433 | 6685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9495915..9496832 | 1260..343 | 4590 | 100 | Minus |
3L | 28110227 | 3L | 9495677..9495852 | 1433..1258 | 880 | 100 | Minus |
3L | 28110227 | 3L | 9496895..9497048 | 346..193 | 770 | 100 | Minus |
3L | 28110227 | 3L | 9497116..9497211 | 192..97 | 480 | 100 | Minus |
3L | 28110227 | 3L | 9499020..9499087 | 98..31 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:51:25 has no hits.
BS13493.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:16 Download gff for
BS13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 235..1650 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:41 Download gff for
BS13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 234..1649 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:58 Download gff for
BS13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 235..1650 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:28 Download gff for
BS13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 234..1649 | 17..1432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:28 Download gff for
BS13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9495678..9495851 | 1259..1432 | 100 | <- | Minus |
3L | 9495917..9496831 | 344..1258 | 100 | <- | Minus |
3L | 9496898..9497048 | 193..343 | 100 | <- | Minus |
3L | 9497116..9497211 | 97..192 | 100 | <- | Minus |
3L | 9499022..9499086 | 32..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:41 Download gff for
BS13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9488778..9488951 | 1259..1432 | 100 | <- | Minus |
arm_3L | 9489017..9489931 | 344..1258 | 100 | <- | Minus |
arm_3L | 9489998..9490148 | 193..343 | 100 | <- | Minus |
arm_3L | 9490216..9490311 | 97..192 | 100 | <- | Minus |
arm_3L | 9492122..9492186 | 32..96 | 100 | <- | Minus |
BS13493.3prime Sequence
668 bp (611 high quality bases) assembled on 2006-10-13
> BS13493.3prime
ATGGTCTAGAAAGCTTCTATTCTCCGACGTTTTCATTATTACTGTAGGCT
TTCACAATATCCTTGATGGCTGCCTGGGTGCCGAAAACAAGAGCGCCAAT
GCCGCACAACGTGATGATTGCGTTCTTCCACAGGATCCAGTTGTATTTAC
CAAAGCCACTCTCCCAATGGACAATCAACTCAATGACCACCGGGAAGATC
AATCCCAGAATGGAGAAGCAGAAGGCACCGATGAGACCCATAAATGGGCC
AATTGTAGGAACAGCCACGGCCAGAACAACGGCAGCGGTCACCAGGACTG
TGCGCAGCACATAGTTGACCAATGTCGGGCGCTTCTTGCACTTCTCCTTA
ATGCCATCCCAGATGATCTCCAGGCACACAAAGAACTGCAGTCCAAATGT
GCAATATACGGCCAGGGAAATGAGCACCTTCACCGTCTGGGCGGGCCACT
CCTCGATGGGCAGATTCAGGGTGATGCTCTCACCGGTGGCGGAACCGTAA
CGCAGATATCCAAGGAATCCCAGCAGCATATAAATAAGGGTCACGCCCGA
CATGCCCTGGCTGAGCACACCGCAGATTCCGAGGAAACTCTGTGGCGTCT
TCATGTTGTTCTCCAGCGGCATAACCACACCGATTGCCTCCATTGCAAAA
ATGGTGATCGAGAAAAAC
BS13493.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3424-PA | 1416 | path-RA | 769..1416 | 664..17 | 3215 | 99.8 | Minus |
CG3424-PC | 1503 | path-RC | 856..1503 | 664..17 | 3215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RE | 2532 | CG3424-RE | 758..1410 | 668..16 | 3235 | 99.7 | Minus |
path-RD | 3122 | CG3424-RD | 1348..2000 | 668..16 | 3235 | 99.7 | Minus |
path-RA | 2772 | CG3424-RA | 998..1650 | 668..16 | 3235 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9495915..9496394 | 189..668 | 2370 | 99.6 | Plus |
3L | 28110227 | 3L | 9495677..9495852 | 16..191 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:11:52 has no hits.
BS13493.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:26 Download gff for
BS13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3424-PC | 852..1503 | 17..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:53 Download gff for
BS13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 998..1655 | 11..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:19 Download gff for
BS13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 998..1655 | 11..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:19 Download gff for
BS13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9495672..9495851 | 11..190 | 98 | <- | Plus |
3L | 9495917..9496394 | 191..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:53 Download gff for
BS13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9488772..9488951 | 11..190 | 98 | <- | Plus |
arm_3L | 9489017..9489494 | 191..668 | 99 | | Plus |
BS13493.5prime Sequence
704 bp (668 high quality bases) assembled on 2006-10-13
> BS13493.5prime
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGGCCATGTTTTCATGGGCCTGGGACTG
GGCA
BS13493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3424-PA | 1416 | path-RA | 1..688 | 17..704 | 3390 | 99.7 | Plus |
CG3424-PC | 1503 | path-RC | 168..775 | 97..704 | 2990 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RD | 3122 | CG3424-RD | 584..1271 | 17..704 | 3410 | 99.7 | Plus |
path-RA | 2772 | CG3424-RA | 234..921 | 17..704 | 3410 | 99.7 | Plus |
path-RE | 2532 | CG3424-RE | 74..681 | 97..704 | 3010 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9496471..9496832 | 704..343 | 1780 | 99.4 | Minus |
3L | 28110227 | 3L | 9496895..9497048 | 346..193 | 770 | 100 | Minus |
3L | 28110227 | 3L | 9497116..9497211 | 192..97 | 480 | 100 | Minus |
3L | 28110227 | 3L | 9499020..9499087 | 98..31 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:51:22 has no hits.
BS13493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:26 Download gff for
BS13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3424-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:51 Download gff for
BS13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 227..920 | 8..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:54 Download gff for
BS13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 227..920 | 8..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:54 Download gff for
BS13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9496472..9496831 | 344..703 | 99 | <- | Minus |
3L | 9496898..9497048 | 193..343 | 100 | <- | Minus |
3L | 9497116..9497211 | 97..192 | 100 | <- | Minus |
3L | 9499022..9499086 | 32..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:51 Download gff for
BS13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9489572..9489931 | 344..703 | 99 | <- | Minus |
arm_3L | 9489998..9490148 | 193..343 | 100 | <- | Minus |
arm_3L | 9490216..9490311 | 97..192 | 100 | <- | Minus |
arm_3L | 9492122..9492186 | 32..96 | 100 | <- | Minus |
BS13493.pep Sequence
Translation from 16 to 1431
> BS13493.pep
MVNIVDSGSKHAPQEMEQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFA
LRDNPHPTTDNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAF
ICTHCSYVLVKCGHKLYYRTRRTKMTFAEIAEAAFQKGPKWCRGFAPVAK
FSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLRMLICIMLVP
LILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVW
STLPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLI
YMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQF
FVCLEIIWDGIKEKCKKRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMGL
IGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALVF
GTQAAIKDIVKAYSNNENVGE*
BS13493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-PD | 471 | CG3424-PD | 1..471 | 1..471 | 2465 | 100 | Plus |
path-PA | 471 | CG3424-PA | 1..471 | 1..471 | 2465 | 100 | Plus |
path-PE | 458 | CG3424-PE | 2..458 | 15..471 | 2331 | 97.6 | Plus |
CG43693-PF | 455 | CG43693-PF | 18..453 | 30..465 | 912 | 43.3 | Plus |
CG43693-PC | 482 | CG43693-PC | 45..480 | 30..465 | 912 | 43.3 | Plus |