Clone BS13493 Report

Search the DGRC for BS13493

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptpath-RA
Protein status:BS13493.pep: full length peptide match
Sequenced Size:1448

Clone Sequence Records

BS13493.complete Sequence

1448 bp assembled on 2009-12-07

GenBank Submission: KX800614

> BS13493.complete
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTG
GGCATTACGTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCG
CGAGTCCGTTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCT
TTGCAATGGAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAG
ACGCCACAGAGTTTCCTCGGAATCTGCGGTGTGCTCAGCCAGGGCATGTC
GGGCGTGACCCTTATTTATATGCTGCTGGGATTCCTTGGATATCTGCGTT
ACGGTTCCGCCACCGGTGAGAGCATCACCCTGAATCTGCCCATCGAGGAG
TGGCCCGCCCAGACGGTGAAGGTGCTCATTTCCCTGGCCGTATATTGCAC
ATTTGGACTGCAGTTCTTTGTGTGCCTGGAGATCATCTGGGATGGCATTA
AGGAGAAGTGCAAGAAGCGCCCGACATTGGTCAACTATGTGCTGCGCACA
GTCCTGGTGACCGCTGCCGTTGTTCTGGCCGTGGCTGTTCCTACAATTGG
CCCATTTATGGGTCTCATCGGTGCCTTCTGCTTCTCCATTCTGGGATTGA
TCTTCCCGGTGGTCATTGAGTTGATTGTCCATTGGGAGAGTGGCTTTGGT
AAATACAACTGGATCCTGTGGAAGAACGCAATCATCACGTTGTGCGGCAT
TGGCGCTCTTGTTTTCGGCACCCAGGCAGCCATCAAGGATATTGTGAAAG
CCTACAGTAATAATGAAAACGTCGGAGAATAGAAGCTTTCTAGACCAT

BS13493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
path-RD 1416 CG3424-PD 1..1416 17..1432 7080 100 Plus
path-RA 1416 CG3424-PA 1..1416 17..1432 7080 100 Plus
path-RE 1377 CG3424-PE 42..1377 97..1432 6680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
path-RD 3122 CG3424-RD 584..2000 17..1433 7085 100 Plus
path-RA 2772 CG3424-RA 234..1650 17..1433 7085 100 Plus
path-RE 2532 CG3424-RE 74..1410 97..1433 6685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9495915..9496832 1260..343 4590 100 Minus
3L 28110227 3L 9495677..9495852 1433..1258 880 100 Minus
3L 28110227 3L 9496895..9497048 346..193 770 100 Minus
3L 28110227 3L 9497116..9497211 192..97 480 100 Minus
3L 28110227 3L 9499020..9499087 98..31 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:51:25 has no hits.

BS13493.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:16 Download gff for BS13493.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 235..1650 17..1432 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:41 Download gff for BS13493.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 234..1649 17..1432 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:58 Download gff for BS13493.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 235..1650 17..1432 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:28 Download gff for BS13493.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 234..1649 17..1432 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:28 Download gff for BS13493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9495678..9495851 1259..1432 100 <- Minus
3L 9495917..9496831 344..1258 100 <- Minus
3L 9496898..9497048 193..343 100 <- Minus
3L 9497116..9497211 97..192 100 <- Minus
3L 9499022..9499086 32..96 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:41 Download gff for BS13493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9488778..9488951 1259..1432 100 <- Minus
arm_3L 9489017..9489931 344..1258 100 <- Minus
arm_3L 9489998..9490148 193..343 100 <- Minus
arm_3L 9490216..9490311 97..192 100 <- Minus
arm_3L 9492122..9492186 32..96 100 <- Minus

BS13493.3prime Sequence

668 bp (611 high quality bases) assembled on 2006-10-13

> BS13493.3prime
ATGGTCTAGAAAGCTTCTATTCTCCGACGTTTTCATTATTACTGTAGGCT
TTCACAATATCCTTGATGGCTGCCTGGGTGCCGAAAACAAGAGCGCCAAT
GCCGCACAACGTGATGATTGCGTTCTTCCACAGGATCCAGTTGTATTTAC
CAAAGCCACTCTCCCAATGGACAATCAACTCAATGACCACCGGGAAGATC
AATCCCAGAATGGAGAAGCAGAAGGCACCGATGAGACCCATAAATGGGCC
AATTGTAGGAACAGCCACGGCCAGAACAACGGCAGCGGTCACCAGGACTG
TGCGCAGCACATAGTTGACCAATGTCGGGCGCTTCTTGCACTTCTCCTTA
ATGCCATCCCAGATGATCTCCAGGCACACAAAGAACTGCAGTCCAAATGT
GCAATATACGGCCAGGGAAATGAGCACCTTCACCGTCTGGGCGGGCCACT
CCTCGATGGGCAGATTCAGGGTGATGCTCTCACCGGTGGCGGAACCGTAA
CGCAGATATCCAAGGAATCCCAGCAGCATATAAATAAGGGTCACGCCCGA
CATGCCCTGGCTGAGCACACCGCAGATTCCGAGGAAACTCTGTGGCGTCT
TCATGTTGTTCTCCAGCGGCATAACCACACCGATTGCCTCCATTGCAAAA
ATGGTGATCGAGAAAAAC

BS13493.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3424-PA 1416 path-RA 769..1416 664..17 3215 99.8 Minus
CG3424-PC 1503 path-RC 856..1503 664..17 3215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
path-RE 2532 CG3424-RE 758..1410 668..16 3235 99.7 Minus
path-RD 3122 CG3424-RD 1348..2000 668..16 3235 99.7 Minus
path-RA 2772 CG3424-RA 998..1650 668..16 3235 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9495915..9496394 189..668 2370 99.6 Plus
3L 28110227 3L 9495677..9495852 16..191 880 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:11:52 has no hits.

BS13493.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:26 Download gff for BS13493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3424-PC 852..1503 17..668 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:53 Download gff for BS13493.3prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 998..1655 11..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:03:19 Download gff for BS13493.3prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 998..1655 11..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:03:19 Download gff for BS13493.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9495672..9495851 11..190 98 <- Plus
3L 9495917..9496394 191..668 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:53 Download gff for BS13493.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9488772..9488951 11..190 98 <- Plus
arm_3L 9489017..9489494 191..668 99   Plus

BS13493.5prime Sequence

704 bp (668 high quality bases) assembled on 2006-10-13

> BS13493.5prime
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGGCCATGTTTTCATGGGCCTGGGACTG
GGCA

BS13493.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3424-PA 1416 path-RA 1..688 17..704 3390 99.7 Plus
CG3424-PC 1503 path-RC 168..775 97..704 2990 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
path-RD 3122 CG3424-RD 584..1271 17..704 3410 99.7 Plus
path-RA 2772 CG3424-RA 234..921 17..704 3410 99.7 Plus
path-RE 2532 CG3424-RE 74..681 97..704 3010 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9496471..9496832 704..343 1780 99.4 Minus
3L 28110227 3L 9496895..9497048 346..193 770 100 Minus
3L 28110227 3L 9497116..9497211 192..97 480 100 Minus
3L 28110227 3L 9499020..9499087 98..31 340 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:51:22 has no hits.

BS13493.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:26 Download gff for BS13493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3424-PA 1..687 17..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:51 Download gff for BS13493.5prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 227..920 8..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:54 Download gff for BS13493.5prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 227..920 8..703 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:54 Download gff for BS13493.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9496472..9496831 344..703 99 <- Minus
3L 9496898..9497048 193..343 100 <- Minus
3L 9497116..9497211 97..192 100 <- Minus
3L 9499022..9499086 32..96 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:51 Download gff for BS13493.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9489572..9489931 344..703 99 <- Minus
arm_3L 9489998..9490148 193..343 100 <- Minus
arm_3L 9490216..9490311 97..192 100 <- Minus
arm_3L 9492122..9492186 32..96 100 <- Minus

BS13493.pep Sequence

Translation from 16 to 1431

> BS13493.pep
MVNIVDSGSKHAPQEMEQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFA
LRDNPHPTTDNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAF
ICTHCSYVLVKCGHKLYYRTRRTKMTFAEIAEAAFQKGPKWCRGFAPVAK
FSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLRMLICIMLVP
LILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVW
STLPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLI
YMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQF
FVCLEIIWDGIKEKCKKRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMGL
IGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALVF
GTQAAIKDIVKAYSNNENVGE*

BS13493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
path-PD 471 CG3424-PD 1..471 1..471 2465 100 Plus
path-PA 471 CG3424-PA 1..471 1..471 2465 100 Plus
path-PE 458 CG3424-PE 2..458 15..471 2331 97.6 Plus
CG43693-PF 455 CG43693-PF 18..453 30..465 912 43.3 Plus
CG43693-PC 482 CG43693-PC 45..480 30..465 912 43.3 Plus