Clone BS13494 Report

Search the DGRC for BS13494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptscf-RA
Protein status:BS13494.pep: full length peptide match
Sequenced Size:1022

Clone Sequence Records

BS13494.3prime Sequence

453 bp (452 high quality bases) assembled on 2006-10-13

> BS13494.3prime
ATGGTCTAGAAAGCTTCTAGAACTCATCGTGGCGGGCCAAGGCCTCGCCG
AAATCGGTGGCCTGGGAGCCGACGAAAACGTCGTACTTGTCTAGTATTTC
CTCCTTTGTCAACTTATCATCGTGGTCCGCATCGGCCTCGAACAGCAGGT
GCTTGGCCTCCGCCTCCGAATGATCGAAGTCATGGGGCGCAATCCACTGC
TTCACTTCCTCCTCGTTCAAATAACCATCTTTGTCCAGGTCGCGATGTGT
GGAGAACGCCTCCCTTTCGTTAGCCACCCACTCGGGCTCCTCGTCTTCCG
CGCCCGTCGATCGGTACATGTCGCCAATGTACTCGTCCACCGAGATCTTG
CCATCGTGGTCCTTGTCCAGATCGGTAATGGTCTCGCGCAGAACCACACC
CTTCATGCTGGGATGGTCCTCGGGGTGCAGGAAGGCGGTAAACTCATCCT
TGG

BS13494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9148-PC 990 scf-RC 554..990 453..17 2185 100 Minus
CG9148-PB 579 scf-RB 143..579 453..17 2185 100 Minus
CG9148-PA 990 scf-RA 554..990 453..17 2185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1600 CG9148-RA 608..1045 453..16 2190 100 Minus
scf-RB 1386 CG9148-RB 394..831 453..16 2190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1299397..1299834 453..16 2190 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:14:02 has no hits.

BS13494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:26 Download gff for BS13494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9148-PA 554..990 17..453 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:51 Download gff for BS13494.3prime
Subject Subject Range Query Range Percent Splice Strand
scf-RB 394..840 5..453 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:32 Download gff for BS13494.3prime
Subject Subject Range Query Range Percent Splice Strand
scf-RB 394..840 5..453 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:32 Download gff for BS13494.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1299397..1299843 5..453 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:51 Download gff for BS13494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1299397..1299843 5..453 99   Minus

BS13494.5prime Sequence

514 bp (464 high quality bases) assembled on 2006-10-13

> BS13494.5prime
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGGAGAAAATGGAGTCAGCT
ACAAGAGCCTGCTG

BS13494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9148-PC 990 scf-RC 1..498 17..514 2440 99.5 Plus
CG9148-PA 990 scf-RA 1..498 17..514 2440 99.5 Plus
CG9148-PB 579 scf-RB 1..87 428..514 385 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1600 CG9148-RA 55..552 17..514 2460 99.6 Plus
scf-RB 1386 CG9148-RB 1..338 177..514 1660 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1298726..1299201 17..492 2350 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 01:01:46 has no hits.

BS13494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:27 Download gff for BS13494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9148-PA 1..498 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:39 Download gff for BS13494.5prime
Subject Subject Range Query Range Percent Splice Strand
scf-RA 46..552 8..514 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:55 Download gff for BS13494.5prime
Subject Subject Range Query Range Percent Splice Strand
scf-RA 46..552 8..514 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:55 Download gff for BS13494.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1298717..1299200 8..491 98 -> Plus
3L 1299319..1299341 492..514 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:39 Download gff for BS13494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1298717..1299200 8..491 98 -> Plus
arm_3L 1299319..1299341 492..514 100   Plus

BS13494.complete Sequence

1022 bp assembled on 2010-02-09

GenBank Submission: KX806346

> BS13494.complete
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCT
ACAAGAGCCTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAG
GACTTGGATGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCC
CGAGGACCATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCG
ATCTGGACAAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGC
GACATGTACCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGC
TAACGAAAGGGAGGCGTTCTCCACACATCGCGACCTGGACAAAGATGGTT
ATTTGAACGAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGAT
CATTCGGAGGCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCA
CGATGATAAGTTGACAAAGGAGGAAATACTAGACAAGTACGACGTTTTCG
TCGGCTCCCAGGCCACCGATTTCGGCGAGGCCTTGGCCCGCCACGATGAG
TTCTAGAAGCTTTCTAGACCAT

BS13494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 990 CG9148-PA 1..990 17..1006 4950 100 Plus
scf-RB 579 CG9148-PB 1..579 428..1006 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1600 CG9148-RA 55..1045 17..1007 4955 100 Plus
scf-RB 1386 CG9148-RB 1..831 177..1007 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1299318..1299834 491..1007 2585 100 Plus
3L 28110227 3L 1298726..1299201 17..492 2380 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:26:27 has no hits.

BS13494.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:14 Download gff for BS13494.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 109..1098 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:21 Download gff for BS13494.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 55..1044 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:27 Download gff for BS13494.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 109..1098 17..1006 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:49 Download gff for BS13494.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 55..1044 17..1006 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:49 Download gff for BS13494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1298726..1299200 17..491 100 -> Plus
3L 1299319..1299833 492..1006 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:21 Download gff for BS13494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1298726..1299200 17..491 100 -> Plus
arm_3L 1299319..1299833 492..1006 100   Plus

BS13494.pep Sequence

Translation from 16 to 1005

> BS13494.pep
MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE
HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE
LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP
DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS
MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA
FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT
KEEILDKYDVFVGSQATDFGEALARHDEF*

BS13494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
scf-PA 329 CG9148-PA 1..329 1..329 1756 100 Plus
scf-PB 192 CG9148-PB 1..192 138..329 1028 100 Plus
CG31650-PF 342 CG31650-PF 8..332 6..323 552 36.7 Plus
CG31650-PE 342 CG31650-PE 8..332 6..323 552 36.7 Plus
CG31650-PD 342 CG31650-PD 8..332 6..323 552 36.7 Plus