Clone Sequence Records
BS13494.3prime Sequence
453 bp (452 high quality bases) assembled on 2006-10-13
> BS13494.3prime
ATGGTCTAGAAAGCTTCTAGAACTCATCGTGGCGGGCCAAGGCCTCGCCG
AAATCGGTGGCCTGGGAGCCGACGAAAACGTCGTACTTGTCTAGTATTTC
CTCCTTTGTCAACTTATCATCGTGGTCCGCATCGGCCTCGAACAGCAGGT
GCTTGGCCTCCGCCTCCGAATGATCGAAGTCATGGGGCGCAATCCACTGC
TTCACTTCCTCCTCGTTCAAATAACCATCTTTGTCCAGGTCGCGATGTGT
GGAGAACGCCTCCCTTTCGTTAGCCACCCACTCGGGCTCCTCGTCTTCCG
CGCCCGTCGATCGGTACATGTCGCCAATGTACTCGTCCACCGAGATCTTG
CCATCGTGGTCCTTGTCCAGATCGGTAATGGTCTCGCGCAGAACCACACC
CTTCATGCTGGGATGGTCCTCGGGGTGCAGGAAGGCGGTAAACTCATCCT
TGG
BS13494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9148-PC | 990 | scf-RC | 554..990 | 453..17 | 2185 | 100 | Minus |
CG9148-PB | 579 | scf-RB | 143..579 | 453..17 | 2185 | 100 | Minus |
CG9148-PA | 990 | scf-RA | 554..990 | 453..17 | 2185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 1600 | CG9148-RA | 608..1045 | 453..16 | 2190 | 100 | Minus |
scf-RB | 1386 | CG9148-RB | 394..831 | 453..16 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1299397..1299834 | 453..16 | 2190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:14:02 has no hits.
BS13494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:26 Download gff for
BS13494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9148-PA | 554..990 | 17..453 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:51 Download gff for
BS13494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RB | 394..840 | 5..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:32 Download gff for
BS13494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RB | 394..840 | 5..453 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:32 Download gff for
BS13494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1299397..1299843 | 5..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:51 Download gff for
BS13494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1299397..1299843 | 5..453 | 99 | | Minus |
BS13494.5prime Sequence
514 bp (464 high quality bases) assembled on 2006-10-13
> BS13494.5prime
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGGAGAAAATGGAGTCAGCT
ACAAGAGCCTGCTG
BS13494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9148-PC | 990 | scf-RC | 1..498 | 17..514 | 2440 | 99.5 | Plus |
CG9148-PA | 990 | scf-RA | 1..498 | 17..514 | 2440 | 99.5 | Plus |
CG9148-PB | 579 | scf-RB | 1..87 | 428..514 | 385 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 1600 | CG9148-RA | 55..552 | 17..514 | 2460 | 99.6 | Plus |
scf-RB | 1386 | CG9148-RB | 1..338 | 177..514 | 1660 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1298726..1299201 | 17..492 | 2350 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:01:46 has no hits.
BS13494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:27 Download gff for
BS13494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9148-PA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:39 Download gff for
BS13494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 46..552 | 8..514 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:55 Download gff for
BS13494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 46..552 | 8..514 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:55 Download gff for
BS13494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1298717..1299200 | 8..491 | 98 | -> | Plus |
3L | 1299319..1299341 | 492..514 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:39 Download gff for
BS13494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1298717..1299200 | 8..491 | 98 | -> | Plus |
arm_3L | 1299319..1299341 | 492..514 | 100 | | Plus |
BS13494.complete Sequence
1022 bp assembled on 2010-02-09
GenBank Submission: KX806346
> BS13494.complete
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCT
ACAAGAGCCTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAG
GACTTGGATGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCC
CGAGGACCATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCG
ATCTGGACAAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGC
GACATGTACCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGC
TAACGAAAGGGAGGCGTTCTCCACACATCGCGACCTGGACAAAGATGGTT
ATTTGAACGAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGAT
CATTCGGAGGCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCA
CGATGATAAGTTGACAAAGGAGGAAATACTAGACAAGTACGACGTTTTCG
TCGGCTCCCAGGCCACCGATTTCGGCGAGGCCTTGGCCCGCCACGATGAG
TTCTAGAAGCTTTCTAGACCAT
BS13494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 990 | CG9148-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
scf-RB | 579 | CG9148-PB | 1..579 | 428..1006 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 1600 | CG9148-RA | 55..1045 | 17..1007 | 4955 | 100 | Plus |
scf-RB | 1386 | CG9148-RB | 1..831 | 177..1007 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1299318..1299834 | 491..1007 | 2585 | 100 | Plus |
3L | 28110227 | 3L | 1298726..1299201 | 17..492 | 2380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:26:27 has no hits.
BS13494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:14 Download gff for
BS13494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 109..1098 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:21 Download gff for
BS13494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 55..1044 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:27 Download gff for
BS13494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 109..1098 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:49 Download gff for
BS13494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 55..1044 | 17..1006 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:49 Download gff for
BS13494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1298726..1299200 | 17..491 | 100 | -> | Plus |
3L | 1299319..1299833 | 492..1006 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:21 Download gff for
BS13494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1298726..1299200 | 17..491 | 100 | -> | Plus |
arm_3L | 1299319..1299833 | 492..1006 | 100 | | Plus |
BS13494.pep Sequence
Translation from 16 to 1005
> BS13494.pep
MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE
HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE
LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP
DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS
MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA
FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT
KEEILDKYDVFVGSQATDFGEALARHDEF*
BS13494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-PA | 329 | CG9148-PA | 1..329 | 1..329 | 1756 | 100 | Plus |
scf-PB | 192 | CG9148-PB | 1..192 | 138..329 | 1028 | 100 | Plus |
CG31650-PF | 342 | CG31650-PF | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PE | 342 | CG31650-PE | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PD | 342 | CG31650-PD | 8..332 | 6..323 | 552 | 36.7 | Plus |