Clone BS13496 Report

Search the DGRC for BS13496

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:134
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG5104-RB
Protein status:BS13496.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13496.3prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-13

> BS13496.3prime
ATGGTCTAGAAAGCTTCTAGACCTCCAGAATTGCCGACATGGTCTTCTTG
ACCGCATCGCGGGCGTAGGGGATGTACGACAGCGAGTACCAGGTCATGGC
CAGAGATTGTATGATAATGAATATAAGCGTGAGTCCCGCCTTTTTCCACA
CAATAGCAGCGATGAACGTCAGGACCATCATGACGAGCACGATGATGGTG
GCGATCAGCCGTGTTTCCGCAAACATTTTCTTGATCTGCTTGAAGGGACC
CATGAGAAAGCAGGTACTGGCCATCGAGATGACGTTTCCTAGAGTGTAGA
AGACCGCAAAGACCACAATGCCCCTGTGCAGAAATAGGGCGACCGAGCCG
AGTAGGGAAAGTAAGATGCCCAAGGCAAAGCAGATGACGAATCCCTTGAT
CCGAGTGGACCAGCTCAAAGTGGACATGTCGTTGATCTGCGTAATGATAC
TGCTCTCCTCCTCCGGAGTGGGCTCATCTCCACTCAGAACGCGGCGCAAC
TTGTCCATGTCGACTGATAACT

BS13496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-PB 492 CG5104-RB 1..492 508..17 2460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 787 CG5104-RB 148..641 508..15 2470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20521408..20521584 443..267 885 100 Minus
3L 28110227 3L 20522154..20522288 149..15 675 100 Minus
3L 28110227 3L 20521657..20521777 269..149 605 100 Minus
3L 28110227 3L 20521156..20521227 508..437 360 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:15:20 has no hits.

BS13496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:27 Download gff for BS13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-PB 1..492 17..508 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:33 Download gff for BS13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..641 15..516 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:57 Download gff for BS13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..641 15..516 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:57 Download gff for BS13496.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20521152..20521227 437..516 95 -> Minus
3L 20521415..20521584 267..436 100 -> Minus
3L 20521660..20521777 149..266 100 -> Minus
3L 20522155..20522288 15..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:33 Download gff for BS13496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20514252..20514327 437..516 95 -> Minus
arm_3L 20514515..20514684 267..436 100 -> Minus
arm_3L 20514760..20514877 149..266 100 -> Minus
arm_3L 20515255..20515388 15..148 100   Minus

BS13496.5prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-13

> BS13496.5prime
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCTAGAAGCTTTCTAGACC

BS13496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-PB 492 CG5104-RB 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 787 CG5104-RB 148..641 17..510 2470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20521408..20521584 82..258 885 100 Plus
3L 28110227 3L 20522154..20522288 376..510 675 100 Plus
3L 28110227 3L 20521657..20521777 256..376 605 100 Plus
3L 28110227 3L 20521156..20521227 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:26:08 has no hits.

BS13496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:28 Download gff for BS13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-PB 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:57 Download gff for BS13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..641 9..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:14 Download gff for BS13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..641 9..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:14 Download gff for BS13496.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20521152..20521227 9..88 95 -> Plus
3L 20521415..20521584 89..258 100 -> Plus
3L 20521660..20521777 259..376 100 -> Plus
3L 20522155..20522288 377..510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:57 Download gff for BS13496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20514515..20514684 89..258 100 -> Plus
arm_3L 20514760..20514877 259..376 100 -> Plus
arm_3L 20514252..20514327 9..88 95 -> Plus
arm_3L 20515255..20515388 377..510 100   Plus

BS13496.complete Sequence

524 bp assembled on 2006-11-01

GenBank Submission: FJ637479

> BS13496.complete
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCTAGAAGCTTTCTAGACCAT

BS13496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 492 CG5104-PB 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 787 CG5104-RB 148..641 17..510 2470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20521408..20521584 82..258 885 100 Plus
3L 28110227 3L 20522154..20522288 376..510 675 100 Plus
3L 28110227 3L 20521657..20521777 256..376 605 100 Plus
3L 28110227 3L 20521156..20521227 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:46:28 has no hits.

BS13496.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:40 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:35 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..641 9..510 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:51 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 148..639 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:41 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..641 9..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:08 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 148..639 17..508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:08 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20521415..20521584 89..258 100 -> Plus
3L 20521660..20521777 259..376 100 -> Plus
3L 20522155..20522286 377..508 100   Plus
3L 20521156..20521227 17..88 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:51 Download gff for BS13496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20514760..20514877 259..376 100 -> Plus
arm_3L 20515255..20515386 377..508 100   Plus
arm_3L 20514256..20514327 17..88 100 -> Plus
arm_3L 20514515..20514684 89..258 100 -> Plus

BS13496.pep Sequence

Translation from 16 to 507

> BS13496.pep
MDKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILL
SLLGSVALFLHRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETR
LIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTWYSLSYIPYAR
DAVKKTMSAILEV*

BS13496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-PB 163 CG5104-PB 1..163 1..163 804 100 Plus
CG33635-PA 199 CG33635-PA 40..180 15..154 170 31.2 Plus