Clone Sequence Records
BS13496.3prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS13496.3prime
ATGGTCTAGAAAGCTTCTAGACCTCCAGAATTGCCGACATGGTCTTCTTG
ACCGCATCGCGGGCGTAGGGGATGTACGACAGCGAGTACCAGGTCATGGC
CAGAGATTGTATGATAATGAATATAAGCGTGAGTCCCGCCTTTTTCCACA
CAATAGCAGCGATGAACGTCAGGACCATCATGACGAGCACGATGATGGTG
GCGATCAGCCGTGTTTCCGCAAACATTTTCTTGATCTGCTTGAAGGGACC
CATGAGAAAGCAGGTACTGGCCATCGAGATGACGTTTCCTAGAGTGTAGA
AGACCGCAAAGACCACAATGCCCCTGTGCAGAAATAGGGCGACCGAGCCG
AGTAGGGAAAGTAAGATGCCCAAGGCAAAGCAGATGACGAATCCCTTGAT
CCGAGTGGACCAGCTCAAAGTGGACATGTCGTTGATCTGCGTAATGATAC
TGCTCTCCTCCTCCGGAGTGGGCTCATCTCCACTCAGAACGCGGCGCAAC
TTGTCCATGTCGACTGATAACT
BS13496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-PB | 492 | CG5104-RB | 1..492 | 508..17 | 2460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 787 | CG5104-RB | 148..641 | 508..15 | 2470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20521408..20521584 | 443..267 | 885 | 100 | Minus |
3L | 28110227 | 3L | 20522154..20522288 | 149..15 | 675 | 100 | Minus |
3L | 28110227 | 3L | 20521657..20521777 | 269..149 | 605 | 100 | Minus |
3L | 28110227 | 3L | 20521156..20521227 | 508..437 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:15:20 has no hits.
BS13496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:27 Download gff for
BS13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-PB | 1..492 | 17..508 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:33 Download gff for
BS13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..641 | 15..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:57 Download gff for
BS13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..641 | 15..516 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:57 Download gff for
BS13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20521152..20521227 | 437..516 | 95 | -> | Minus |
3L | 20521415..20521584 | 267..436 | 100 | -> | Minus |
3L | 20521660..20521777 | 149..266 | 100 | -> | Minus |
3L | 20522155..20522288 | 15..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:33 Download gff for
BS13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20514252..20514327 | 437..516 | 95 | -> | Minus |
arm_3L | 20514515..20514684 | 267..436 | 100 | -> | Minus |
arm_3L | 20514760..20514877 | 149..266 | 100 | -> | Minus |
arm_3L | 20515255..20515388 | 15..148 | 100 | | Minus |
BS13496.5prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS13496.5prime
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCTAGAAGCTTTCTAGACC
BS13496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-PB | 492 | CG5104-RB | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 787 | CG5104-RB | 148..641 | 17..510 | 2470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20521408..20521584 | 82..258 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20522154..20522288 | 376..510 | 675 | 100 | Plus |
3L | 28110227 | 3L | 20521657..20521777 | 256..376 | 605 | 100 | Plus |
3L | 28110227 | 3L | 20521156..20521227 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:26:08 has no hits.
BS13496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:28 Download gff for
BS13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-PB | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:57 Download gff for
BS13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..641 | 9..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:14 Download gff for
BS13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..641 | 9..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:14 Download gff for
BS13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20521152..20521227 | 9..88 | 95 | -> | Plus |
3L | 20521415..20521584 | 89..258 | 100 | -> | Plus |
3L | 20521660..20521777 | 259..376 | 100 | -> | Plus |
3L | 20522155..20522288 | 377..510 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:57 Download gff for
BS13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20514515..20514684 | 89..258 | 100 | -> | Plus |
arm_3L | 20514760..20514877 | 259..376 | 100 | -> | Plus |
arm_3L | 20514252..20514327 | 9..88 | 95 | -> | Plus |
arm_3L | 20515255..20515388 | 377..510 | 100 | | Plus |
BS13496.complete Sequence
524 bp assembled on 2006-11-01
GenBank Submission: FJ637479
> BS13496.complete
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCTAGAAGCTTTCTAGACCAT
BS13496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 492 | CG5104-PB | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 787 | CG5104-RB | 148..641 | 17..510 | 2470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20521408..20521584 | 82..258 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20522154..20522288 | 376..510 | 675 | 100 | Plus |
3L | 28110227 | 3L | 20521657..20521777 | 256..376 | 605 | 100 | Plus |
3L | 28110227 | 3L | 20521156..20521227 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:46:28 has no hits.
BS13496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:40 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:35 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..641 | 9..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:51 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 148..639 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:41 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..641 | 9..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:08 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 148..639 | 17..508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:08 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20521415..20521584 | 89..258 | 100 | -> | Plus |
3L | 20521660..20521777 | 259..376 | 100 | -> | Plus |
3L | 20522155..20522286 | 377..508 | 100 | | Plus |
3L | 20521156..20521227 | 17..88 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:51 Download gff for
BS13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20514760..20514877 | 259..376 | 100 | -> | Plus |
arm_3L | 20515255..20515386 | 377..508 | 100 | | Plus |
arm_3L | 20514256..20514327 | 17..88 | 100 | -> | Plus |
arm_3L | 20514515..20514684 | 89..258 | 100 | -> | Plus |
BS13496.pep Sequence
Translation from 16 to 507
> BS13496.pep
MDKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILL
SLLGSVALFLHRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETR
LIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTWYSLSYIPYAR
DAVKKTMSAILEV*
BS13496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-PB | 163 | CG5104-PB | 1..163 | 1..163 | 804 | 100 | Plus |
CG33635-PA | 199 | CG33635-PA | 40..180 | 15..154 | 170 | 31.2 | Plus |