Clone BS13519 Report

Search the DGRC for BS13519

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCanB-RA
Protein status:BS13519.pep: full length peptide match
Sequenced Size:545

Clone Sequence Records

BS13519.complete Sequence

545 bp assembled on 2010-02-09

GenBank Submission: KX800409

> BS13519.complete
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATA
TTCACAAGAAAATGGTTGTCGATGTTTAGAAGCTTTCTAGACCAT

BS13519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 513 CG4209-PB 1..513 17..529 2565 100 Plus
CanB-RA 513 CG4209-PA 1..513 17..529 2565 100 Plus
CanB2-RB 513 CG11217-PB 1..509 17..525 1405 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 1148 CG4209-RB 103..617 16..530 2575 100 Plus
CanB-RA 1214 CG4209-RA 169..683 16..530 2575 100 Plus
CanB2-RB 2061 CG11217-RB 257..765 17..525 1405 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5333404..5333918 16..530 2575 100 Plus
2R 25286936 2R 7787234..7787533 60..359 825 85 Plus
2R 25286936 2R 7787597..7787757 365..525 490 87 Plus
Blast to na_te.dros performed on 2014-11-28 04:24:28 has no hits.

BS13519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:44 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:02 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 167..679 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:43 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 170..682 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:44 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 167..682 17..535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:59 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 170..682 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:59 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
X 5333405..5333917 17..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:43 Download gff for BS13519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5227438..5227950 17..529 100   Plus

BS13519.5prime Sequence

477 bp (452 high quality bases) assembled on 2006-10-13

> BS13519.5prime
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTG

BS13519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4209-PA 513 CanB-RA 1..461 17..477 2305 100 Plus
CG11217-PA 513 CanB2-RA 19..251 35..267 415 87.1 Plus
CG11217-PA 513 CanB2-RA 349..407 365..423 170 91.5 Plus
CG11217-PA 513 CanB2-RA 256..320 272..336 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 1148 CG4209-RB 103..564 16..477 2310 100 Plus
CanB-RA 1214 CG4209-RA 169..630 16..477 2310 100 Plus
CanB2-RB 2061 CG11217-RB 257..717 17..477 1270 85 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5333404..5333865 16..477 2310 100 Plus
2R 25286936 2R 7787234..7787533 60..359 825 85 Plus
2R 25286936 2R 7787597..7787709 365..477 355 87.6 Plus
Blast to na_te.dros performed on 2015-02-13 07:10:50 has no hits.

BS13519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:36 Download gff for BS13519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4209-PA 1..461 17..477 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:41:29 Download gff for BS13519.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 162..630 10..477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:18 Download gff for BS13519.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 162..630 10..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:18 Download gff for BS13519.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5333397..5333865 10..477 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:41:29 Download gff for BS13519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5227430..5227898 10..477 99   Plus

BS13519.pep Sequence

Translation from 16 to 528

> BS13519.pep
MGNETSLPMDMCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVRGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTICFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDV*

BS13519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-PB 170 CG4209-PB 1..170 1..170 878 100 Plus
CanB-PA 170 CG4209-PA 1..170 1..170 878 100 Plus
CanB2-PB 170 CG11217-PB 1..170 1..170 858 97.6 Plus
CanB2-PA 170 CG11217-PA 1..170 1..170 858 97.6 Plus
elm-PB 189 CG2185-PB 1..185 1..168 311 38.9 Plus