Clone Sequence Records
BS13519.complete Sequence
545 bp assembled on 2010-02-09
GenBank Submission: KX800409
> BS13519.complete
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATA
TTCACAAGAAAATGGTTGTCGATGTTTAGAAGCTTTCTAGACCAT
BS13519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 513 | CG4209-PB | 1..513 | 17..529 | 2565 | 100 | Plus |
CanB-RA | 513 | CG4209-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
CanB2-RB | 513 | CG11217-PB | 1..509 | 17..525 | 1405 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 1148 | CG4209-RB | 103..617 | 16..530 | 2575 | 100 | Plus |
CanB-RA | 1214 | CG4209-RA | 169..683 | 16..530 | 2575 | 100 | Plus |
CanB2-RB | 2061 | CG11217-RB | 257..765 | 17..525 | 1405 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5333404..5333918 | 16..530 | 2575 | 100 | Plus |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 825 | 85 | Plus |
2R | 25286936 | 2R | 7787597..7787757 | 365..525 | 490 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:24:28 has no hits.
BS13519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:44 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:02 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 167..679 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:43 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 170..682 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:44 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 167..682 | 17..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:59 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 170..682 | 17..529 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:59 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5333405..5333917 | 17..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:43 Download gff for
BS13519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5227438..5227950 | 17..529 | 100 | | Plus |
BS13519.5prime Sequence
477 bp (452 high quality bases) assembled on 2006-10-13
> BS13519.5prime
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTG
BS13519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4209-PA | 513 | CanB-RA | 1..461 | 17..477 | 2305 | 100 | Plus |
CG11217-PA | 513 | CanB2-RA | 19..251 | 35..267 | 415 | 87.1 | Plus |
CG11217-PA | 513 | CanB2-RA | 349..407 | 365..423 | 170 | 91.5 | Plus |
CG11217-PA | 513 | CanB2-RA | 256..320 | 272..336 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 1148 | CG4209-RB | 103..564 | 16..477 | 2310 | 100 | Plus |
CanB-RA | 1214 | CG4209-RA | 169..630 | 16..477 | 2310 | 100 | Plus |
CanB2-RB | 2061 | CG11217-RB | 257..717 | 17..477 | 1270 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5333404..5333865 | 16..477 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 825 | 85 | Plus |
2R | 25286936 | 2R | 7787597..7787709 | 365..477 | 355 | 87.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:10:50 has no hits.
BS13519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:36 Download gff for
BS13519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4209-PA | 1..461 | 17..477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:41:29 Download gff for
BS13519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 162..630 | 10..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:18 Download gff for
BS13519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 162..630 | 10..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:18 Download gff for
BS13519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5333397..5333865 | 10..477 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:41:29 Download gff for
BS13519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5227430..5227898 | 10..477 | 99 | | Plus |
BS13519.pep Sequence
Translation from 16 to 528
> BS13519.pep
MGNETSLPMDMCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVRGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTICFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDV*
BS13519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-PB | 170 | CG4209-PB | 1..170 | 1..170 | 878 | 100 | Plus |
CanB-PA | 170 | CG4209-PA | 1..170 | 1..170 | 878 | 100 | Plus |
CanB2-PB | 170 | CG11217-PB | 1..170 | 1..170 | 858 | 97.6 | Plus |
CanB2-PA | 170 | CG11217-PA | 1..170 | 1..170 | 858 | 97.6 | Plus |
elm-PB | 189 | CG2185-PB | 1..185 | 1..168 | 311 | 38.9 | Plus |