Clone Sequence Records
BS13520.complete Sequence
512 bp assembled on 2010-02-09
GenBank Submission: KX806536
> BS13520.complete
GAAGTTATCAGTCGACATGAACCGAATTTGCCAGAGTCTCCGCCATCCGA
GATACCAGATTCTCGCCACCACAGCACCGCAATCCCTGCTCACCCGCTTT
CTTGCGGCGGATGCGGCCACCGGCGCGGCAGTGGACAAGGCGACAATGGA
CAAGCTGGTGCGCACCAACAAGGTGGTCGTCTTCATGAAGGGCAACCCAC
AGGCGCCACGCTGCGGCTTCAGCAATGCGGTGGTGCAGATTATGCGGATG
CACGGTGTCCAGTACGATGCCCACGATGTGCTGCAAAACGAGTCCCTGCG
ACAGGGTGTCAAGGACTACACCGACTGGCCGACCATTCCGCAGGTGTTCA
TCAATGGCGAATTTGTCGGCGGTTGCGACATCCTGCTGCAGATGCACCAG
AGCGGCGATCTCATCGAGGAGCTCAAGAAGGCGGGCATCATTTCGGAGCT
GCTGAAAGCGGAGGAGGCTAAGCAGCAGGACGACAAGGCTAAGTGAAAGC
TTTCTAGACCAT
BS13520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14407-RA | 480 | CG14407-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14407-RA | 668 | CG14407-RA | 97..576 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14837811..14838102 | 308..17 | 1460 | 100 | Minus |
X | 23542271 | X | 14837563..14837754 | 496..305 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:50:47 has no hits.
BS13520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:45 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:22 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 96..574 | 17..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:59 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 97..575 | 17..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:14 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 96..574 | 17..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:19 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 97..575 | 17..495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:19 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14837564..14837753 | 306..495 | 100 | <- | Minus |
X | 14837814..14838102 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:59 Download gff for
BS13520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14731847..14732135 | 17..305 | 100 | | Minus |
arm_X | 14731597..14731786 | 306..495 | 100 | <- | Minus |
BS13520.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS13520.5prime
GAAGTTATCAGTCGACATGAACCGAATTTGCCAGAGTCTCCGCCATCCGA
GATACCAGATTCTCGCCACCACAGCACCGCAATCCCTGCTCACCCGCTTT
CTTGCGGCGGATGCGGCCACCGGCGCGGCAGTGGACAAGGCGACAATGGA
CAAGCTGGTGCGCACCAACAAGGTGGTCGTCTTCATGAAGGGCAACCCAC
AGGCGCCACGCTGCGGCTTCAGCAATGCGGTGGTGCAGATTATGCGGATG
CACGGTGTCCAGTACGATGCCCACGATGTGCTGCAAAACGAGTCCCTGCG
ACAGGGTGTCAAGGACTACACCGACTGGCCGACCATTCCGCAGGTGTTCA
TCAATGGCGAATTTGTCGGCGGTTGCGACATCCTGCTGCAGATGCACCAG
AGCGGCGATCTCATCGAGGAGCTCAAGAAGGCGGGCATCATTTCGGAGCT
GCTGAAAGCGGAGGAGGCTAAGCAGCAGGACGACAAGGCTAAGTGAAAGC
TTTCTAGACC
BS13520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14407-PA | 480 | CG14407-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14407-RA | 668 | CG14407-RA | 97..576 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14837811..14838102 | 308..17 | 1460 | 100 | Minus |
X | 23542271 | X | 14837563..14837754 | 496..305 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:55:42 has no hits.
BS13520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:37 Download gff for
BS13520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:38:45 Download gff for
BS13520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 91..581 | 11..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:26 Download gff for
BS13520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14407-RA | 91..581 | 11..502 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:26 Download gff for
BS13520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14837558..14837753 | 306..502 | 98 | <- | Minus |
X | 14837814..14838108 | 11..305 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:38:45 Download gff for
BS13520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14731591..14731786 | 306..502 | 98 | <- | Minus |
arm_X | 14731847..14732141 | 11..305 | 99 | | Minus |
BS13520.pep Sequence
Translation from 16 to 495
> BS13520.pep
MNRICQSLRHPRYQILATTAPQSLLTRFLAADAATGAAVDKATMDKLVRT
NKVVVFMKGNPQAPRCGFSNAVVQIMRMHGVQYDAHDVLQNESLRQGVKD
YTDWPTIPQVFINGEFVGGCDILLQMHQSGDLIEELKKAGIISELLKAEE
AKQQDDKAK*
BS13520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14407-PA | 159 | CG14407-PA | 1..159 | 1..159 | 818 | 100 | Plus |
CG6523-PA | 216 | CG6523-PA | 94..215 | 15..137 | 243 | 37.4 | Plus |