Clone BS13520 Report

Search the DGRC for BS13520

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG14407-RA
Protein status:BS13520.pep: full length peptide match
Sequenced Size:512

Clone Sequence Records

BS13520.complete Sequence

512 bp assembled on 2010-02-09

GenBank Submission: KX806536

> BS13520.complete
GAAGTTATCAGTCGACATGAACCGAATTTGCCAGAGTCTCCGCCATCCGA
GATACCAGATTCTCGCCACCACAGCACCGCAATCCCTGCTCACCCGCTTT
CTTGCGGCGGATGCGGCCACCGGCGCGGCAGTGGACAAGGCGACAATGGA
CAAGCTGGTGCGCACCAACAAGGTGGTCGTCTTCATGAAGGGCAACCCAC
AGGCGCCACGCTGCGGCTTCAGCAATGCGGTGGTGCAGATTATGCGGATG
CACGGTGTCCAGTACGATGCCCACGATGTGCTGCAAAACGAGTCCCTGCG
ACAGGGTGTCAAGGACTACACCGACTGGCCGACCATTCCGCAGGTGTTCA
TCAATGGCGAATTTGTCGGCGGTTGCGACATCCTGCTGCAGATGCACCAG
AGCGGCGATCTCATCGAGGAGCTCAAGAAGGCGGGCATCATTTCGGAGCT
GCTGAAAGCGGAGGAGGCTAAGCAGCAGGACGACAAGGCTAAGTGAAAGC
TTTCTAGACCAT

BS13520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14407-RA 480 CG14407-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14407-RA 668 CG14407-RA 97..576 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14837811..14838102 308..17 1460 100 Minus
X 23542271 X 14837563..14837754 496..305 960 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:50:47 has no hits.

BS13520.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:45 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:22 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 96..574 17..495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:59 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 97..575 17..495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:14 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 96..574 17..495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:19 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 97..575 17..495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:19 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
X 14837564..14837753 306..495 100 <- Minus
X 14837814..14838102 17..305 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:59 Download gff for BS13520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14731847..14732135 17..305 100   Minus
arm_X 14731597..14731786 306..495 100 <- Minus

BS13520.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS13520.5prime
GAAGTTATCAGTCGACATGAACCGAATTTGCCAGAGTCTCCGCCATCCGA
GATACCAGATTCTCGCCACCACAGCACCGCAATCCCTGCTCACCCGCTTT
CTTGCGGCGGATGCGGCCACCGGCGCGGCAGTGGACAAGGCGACAATGGA
CAAGCTGGTGCGCACCAACAAGGTGGTCGTCTTCATGAAGGGCAACCCAC
AGGCGCCACGCTGCGGCTTCAGCAATGCGGTGGTGCAGATTATGCGGATG
CACGGTGTCCAGTACGATGCCCACGATGTGCTGCAAAACGAGTCCCTGCG
ACAGGGTGTCAAGGACTACACCGACTGGCCGACCATTCCGCAGGTGTTCA
TCAATGGCGAATTTGTCGGCGGTTGCGACATCCTGCTGCAGATGCACCAG
AGCGGCGATCTCATCGAGGAGCTCAAGAAGGCGGGCATCATTTCGGAGCT
GCTGAAAGCGGAGGAGGCTAAGCAGCAGGACGACAAGGCTAAGTGAAAGC
TTTCTAGACC

BS13520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14407-PA 480 CG14407-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14407-RA 668 CG14407-RA 97..576 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14837811..14838102 308..17 1460 100 Minus
X 23542271 X 14837563..14837754 496..305 960 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:55:42 has no hits.

BS13520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:37 Download gff for BS13520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14407-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:38:45 Download gff for BS13520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 91..581 11..502 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:26 Download gff for BS13520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14407-RA 91..581 11..502 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:26 Download gff for BS13520.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14837558..14837753 306..502 98 <- Minus
X 14837814..14838108 11..305 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:38:45 Download gff for BS13520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14731591..14731786 306..502 98 <- Minus
arm_X 14731847..14732141 11..305 99   Minus

BS13520.pep Sequence

Translation from 16 to 495

> BS13520.pep
MNRICQSLRHPRYQILATTAPQSLLTRFLAADAATGAAVDKATMDKLVRT
NKVVVFMKGNPQAPRCGFSNAVVQIMRMHGVQYDAHDVLQNESLRQGVKD
YTDWPTIPQVFINGEFVGGCDILLQMHQSGDLIEELKKAGIISELLKAEE
AKQQDDKAK*

BS13520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14407-PA 159 CG14407-PA 1..159 1..159 818 100 Plus
CG6523-PA 216 CG6523-PA 94..215 15..137 243 37.4 Plus