Clone BS13522 Report

Search the DGRC for BS13522

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptdpr16-RA
Protein status:BS13522.pep: full length peptide match
Sequenced Size:992

Clone Sequence Records

BS13522.5prime Sequence

517 bp (481 high quality bases) assembled on 2006-10-13

> BS13522.5prime
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTT

BS13522.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12591-PA 960 dpr16-RA 1..501 17..517 2505 100 Plus
CG12591-PB 1332 dpr16-RB 527..873 171..517 1735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 2810 CG12591-RC 1450..1796 171..517 1735 100 Plus
dpr16-RB 1968 CG12591-RB 608..954 171..517 1735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5165924..5166424 17..517 2505 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:15:42 has no hits.

BS13522.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:37 Download gff for BS13522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12591-PA 1..501 17..517 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:54 Download gff for BS13522.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1538..2041 11..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:56 Download gff for BS13522.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-RB 600..954 163..517 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:56 Download gff for BS13522.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5165921..5166424 11..517 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:54 Download gff for BS13522.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 991643..992146 11..517 99   Plus

BS13522.complete Sequence

992 bp assembled on 2010-07-02

GenBank Submission: KX802845

> BS13522.complete
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGGCGAT
CGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCACTGCATCGT
ACGTGGCACCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACC
AACAAGTGACTGCCGAAAACGAGGCCAGCGGCGCCCAGAGCGGATGGTAC
ACGCAAATCGACCGGAATATCTTCGGCAGCACCGAGCACAATCGGAACAC
GATTGGTTCCCTGGTCATTCCTCTGGTGCGCAAGATTCACTCCGGCAACT
ACACGTGTGAGCCGGAAAACAGTGCGGCAGCTTCTATGCAGTTGCACGTC
CTGAGCGGGGAATATTCTGCCTCCGCCATAAAGTCGACTGCTGCTAGGCC
CCACAGACTGGGTCACGGGTACACTAGTCTACACCAGTGGCTAATCTTTC
TTTTGGTGGCCCTGAACAAGACATGAAAGCTTTCTAGACCAT

BS13522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 1467 CG12591-PC 662..1467 171..976 4030 100 Plus
dpr16-RB 1332 CG12591-PB 527..1332 171..976 4030 100 Plus
dpr17-RE 1527 CG31361-PE 948..1176 418..646 335 76.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 2810 CG12591-RC 1450..2255 171..976 4030 100 Plus
dpr16-RB 1968 CG12591-RB 608..1413 171..976 4030 100 Plus
dpr17-RE 2663 CG31361-RE 1647..1875 418..646 335 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5165924..5166431 17..524 2540 100 Plus
3R 32079331 3R 5166863..5167089 525..751 1135 100 Plus
3R 32079331 3R 5169447..5169566 857..976 600 100 Plus
3R 32079331 3R 5167159..5167266 751..858 540 100 Plus
3R 32079331 3R 12110323..12110412 557..646 255 85.6 Plus
Blast to na_te.dros performed on 2014-11-28 02:22:40 has no hits.

BS13522.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:08 Download gff for BS13522.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1541..2499 17..975 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:53 Download gff for BS13522.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1541..2499 17..975 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:55 Download gff for BS13522.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RB 600..1412 163..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:55 Download gff for BS13522.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5165924..5166431 17..524 100 -> Plus
3R 5166863..5167089 525..751 100 -> Plus
3R 5167160..5167265 752..857 100 -> Plus
3R 5169448..5169565 858..975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:53 Download gff for BS13522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 991646..992153 17..524 100 -> Plus
arm_3R 992585..992811 525..751 100 -> Plus
arm_3R 992882..992987 752..857 100 -> Plus
arm_3R 995170..995287 858..975 100   Plus

BS13522.pep Sequence

Translation from 16 to 975

> BS13522.pep
MGFLSHTIVNLVGDAKCRIMNELIGEGASLLPNSFVHYKQHTNNIHDNSH
LQLNQHSGKPLSWVRLRDEHIIAVDHTTFINDARFASLLQSTTLTTLVSG
GALSTTATPVAALGNSFAHAVPGGQERGNSSSLSWTLQIKYVNLEDAGWY
ECQLATEPKMSAKVQLFVITPRTELIGDRQRFVKAGSRVELHCIVRGTLE
APKYIFWYRGDQQVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGSLV
IPLVRKIHSGNYTCEPENSAAASMQLHVLSGEYSASAIKSTAARPHRLGH
GYTSLHQWLIFLLVALNKT*

BS13522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-PB 443 CG12591-PB 176..443 52..319 1390 99.6 Plus
dpr16-PC 488 CG12591-PC 221..488 52..319 1390 99.6 Plus
dpr17-PE 508 CG31361-PE 243..477 25..299 675 49.8 Plus
dpr17-PC 508 CG31361-PC 243..477 25..299 675 49.8 Plus
dpr17-PB 508 CG31361-PB 243..477 25..299 675 49.8 Plus