Clone Sequence Records
BS13522.5prime Sequence
517 bp (481 high quality bases) assembled on 2006-10-13
> BS13522.5prime
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTT
BS13522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12591-PA | 960 | dpr16-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
CG12591-PB | 1332 | dpr16-RB | 527..873 | 171..517 | 1735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 2810 | CG12591-RC | 1450..1796 | 171..517 | 1735 | 100 | Plus |
dpr16-RB | 1968 | CG12591-RB | 608..954 | 171..517 | 1735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5165924..5166424 | 17..517 | 2505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:15:42 has no hits.
BS13522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:37 Download gff for
BS13522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12591-PA | 1..501 | 17..517 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:54 Download gff for
BS13522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1538..2041 | 11..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:56 Download gff for
BS13522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RB | 600..954 | 163..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:56 Download gff for
BS13522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5165921..5166424 | 11..517 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:54 Download gff for
BS13522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 991643..992146 | 11..517 | 99 | | Plus |
BS13522.complete Sequence
992 bp assembled on 2010-07-02
GenBank Submission: KX802845
> BS13522.complete
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGGCGAT
CGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCACTGCATCGT
ACGTGGCACCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACC
AACAAGTGACTGCCGAAAACGAGGCCAGCGGCGCCCAGAGCGGATGGTAC
ACGCAAATCGACCGGAATATCTTCGGCAGCACCGAGCACAATCGGAACAC
GATTGGTTCCCTGGTCATTCCTCTGGTGCGCAAGATTCACTCCGGCAACT
ACACGTGTGAGCCGGAAAACAGTGCGGCAGCTTCTATGCAGTTGCACGTC
CTGAGCGGGGAATATTCTGCCTCCGCCATAAAGTCGACTGCTGCTAGGCC
CCACAGACTGGGTCACGGGTACACTAGTCTACACCAGTGGCTAATCTTTC
TTTTGGTGGCCCTGAACAAGACATGAAAGCTTTCTAGACCAT
BS13522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 1467 | CG12591-PC | 662..1467 | 171..976 | 4030 | 100 | Plus |
dpr16-RB | 1332 | CG12591-PB | 527..1332 | 171..976 | 4030 | 100 | Plus |
dpr17-RE | 1527 | CG31361-PE | 948..1176 | 418..646 | 335 | 76.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 2810 | CG12591-RC | 1450..2255 | 171..976 | 4030 | 100 | Plus |
dpr16-RB | 1968 | CG12591-RB | 608..1413 | 171..976 | 4030 | 100 | Plus |
dpr17-RE | 2663 | CG31361-RE | 1647..1875 | 418..646 | 335 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5165924..5166431 | 17..524 | 2540 | 100 | Plus |
3R | 32079331 | 3R | 5166863..5167089 | 525..751 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 5169447..5169566 | 857..976 | 600 | 100 | Plus |
3R | 32079331 | 3R | 5167159..5167266 | 751..858 | 540 | 100 | Plus |
3R | 32079331 | 3R | 12110323..12110412 | 557..646 | 255 | 85.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:22:40 has no hits.
BS13522.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:08 Download gff for
BS13522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1541..2499 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:53 Download gff for
BS13522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1541..2499 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:55 Download gff for
BS13522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RB | 600..1412 | 163..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:55 Download gff for
BS13522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5165924..5166431 | 17..524 | 100 | -> | Plus |
3R | 5166863..5167089 | 525..751 | 100 | -> | Plus |
3R | 5167160..5167265 | 752..857 | 100 | -> | Plus |
3R | 5169448..5169565 | 858..975 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:53 Download gff for
BS13522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 991646..992153 | 17..524 | 100 | -> | Plus |
arm_3R | 992585..992811 | 525..751 | 100 | -> | Plus |
arm_3R | 992882..992987 | 752..857 | 100 | -> | Plus |
arm_3R | 995170..995287 | 858..975 | 100 | | Plus |
BS13522.pep Sequence
Translation from 16 to 975
> BS13522.pep
MGFLSHTIVNLVGDAKCRIMNELIGEGASLLPNSFVHYKQHTNNIHDNSH
LQLNQHSGKPLSWVRLRDEHIIAVDHTTFINDARFASLLQSTTLTTLVSG
GALSTTATPVAALGNSFAHAVPGGQERGNSSSLSWTLQIKYVNLEDAGWY
ECQLATEPKMSAKVQLFVITPRTELIGDRQRFVKAGSRVELHCIVRGTLE
APKYIFWYRGDQQVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGSLV
IPLVRKIHSGNYTCEPENSAAASMQLHVLSGEYSASAIKSTAARPHRLGH
GYTSLHQWLIFLLVALNKT*
BS13522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-PB | 443 | CG12591-PB | 176..443 | 52..319 | 1390 | 99.6 | Plus |
dpr16-PC | 488 | CG12591-PC | 221..488 | 52..319 | 1390 | 99.6 | Plus |
dpr17-PE | 508 | CG31361-PE | 243..477 | 25..299 | 675 | 49.8 | Plus |
dpr17-PC | 508 | CG31361-PC | 243..477 | 25..299 | 675 | 49.8 | Plus |
dpr17-PB | 508 | CG31361-PB | 243..477 | 25..299 | 675 | 49.8 | Plus |