Clone Sequence Records
BS13526.complete Sequence
437 bp assembled on 2010-02-09
GenBank Submission: KX804541
> BS13526.complete
GAAGTTATCAGTCGACATGACCATCCGCCCAGCATACAGGCCCAAGATCG
TGAAGAAGCGCACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCT
AAGCTGTCGCACAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCG
TCGCCGCTTCAAGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGA
ACAAGCGCACCCGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTG
CACAACGTGCGCGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTG
CGGCGAGATCGCCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCG
AGCGCGCCAAGCAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTG
CGTTCTCAAGAGAACGAGTAAAAGCTTTCTAGACCAT
BS13526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-RD | 405 | CG7939-PD | 1..405 | 17..421 | 2025 | 100 | Plus |
| RpL32-RA | 405 | CG7939-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
| RpL32-RC | 444 | CG7939-PC | 40..444 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-RD | 747 | CG7939-RD | 287..691 | 17..421 | 2025 | 100 | Plus |
| RpL32-RA | 578 | CG7939-RA | 90..494 | 17..421 | 2025 | 100 | Plus |
| RpL32-RC | 747 | CG7939-RC | 259..663 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30045313..30045625 | 421..109 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 30045687..30045779 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:23:44 has no hits.
BS13526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:47 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:52 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RB | 33..435 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:27 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 259..661 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:58 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RB | 33..435 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:38 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 259..661 | 17..419 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:38 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30045315..30045624 | 110..419 | 100 | <- | Minus |
| 3R | 30045687..30045779 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:27 Download gff for
BS13526.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25871409..25871501 | 17..109 | 100 | | Minus |
| arm_3R | 25871037..25871346 | 110..419 | 100 | <- | Minus |
BS13526.3prime Sequence
435 bp (435 high quality bases) assembled on 2006-10-13
> BS13526.3prime
ATGGTCTAGAAAGCTTTTACTCGTTCTCTTGAGAACGCAGGCGACCGTTG
GGGTTGGTGAGGCGGACCGACAGCTGCTTGGCGCGCTCGACAATCTCCTT
GCGCTTCTTGGAGGAGACGCCGTGGGCGATCTCGCCGCAGTAAACGCGGT
TCTGCATGAGCAGGACCTCCAGCTCGCGCACGTTGTGCACCAGGAACTTC
TTGAATCCGGTGGGCAGCATGTGGCGGGTGCGCTTGTTCGATCCGTAACC
GATGTTGGGCATCAGATACTGTCCCTTGAAGCGGCGACGCACTCTGTTGT
CGATACCCTTGGGCTTGCGCCATTTGTGCGACAGCTTAGCATATCGATCC
GACTGGTGGCGGATGAAGTGCTTGGTGCGCTTCTTCACGATCTTGGGCCT
GTATGCTGGGCGGATGGTCATGTCGACTGATAACT
BS13526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7939-PB | 405 | RpL32-RB | 1..405 | 421..17 | 2025 | 100 | Minus |
| CG7939-PC | 444 | RpL32-RC | 40..444 | 421..17 | 2025 | 100 | Minus |
| CG7939-PA | 405 | RpL32-RA | 1..405 | 421..17 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-RD | 747 | CG7939-RD | 287..691 | 421..17 | 2025 | 100 | Minus |
| RpL32-RA | 578 | CG7939-RA | 90..494 | 421..17 | 2025 | 100 | Minus |
| RpL32-RC | 747 | CG7939-RC | 259..663 | 421..17 | 2025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30045313..30045625 | 17..329 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 30045687..30045779 | 329..421 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:45:52 has no hits.
BS13526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:38 Download gff for
BS13526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7939-PA | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:56 Download gff for
BS13526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 254..671 | 5..426 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:29 Download gff for
BS13526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 254..671 | 5..426 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:29 Download gff for
BS13526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30045305..30045624 | 5..328 | 98 | <- | Plus |
| 3R | 30045687..30045784 | 329..426 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:56 Download gff for
BS13526.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25871027..25871346 | 5..328 | 98 | <- | Plus |
| arm_3R | 25871409..25871506 | 329..426 | 97 | | Plus |
BS13526.5prime Sequence
435 bp (435 high quality bases) assembled on 2006-10-13
> BS13526.5prime
GAAGTTATCAGTCGACATGACCATCCGCCCAGCATACAGGCCCAAGATCG
TGAAGAAGCGCACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCT
AAGCTGTCGCACAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCG
TCGCCGCTTCAAGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGA
ACAAGCGCACCCGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTG
CACAACGTGCGCGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTG
CGGCGAGATCGCCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCG
AGCGCGCCAAGCAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTG
CGTTCTCAAGAGAACGAGTAAAAGCTTTCTAGACC
BS13526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7939-PB | 405 | RpL32-RB | 1..405 | 17..421 | 2025 | 100 | Plus |
| CG7939-PC | 444 | RpL32-RC | 40..444 | 17..421 | 2025 | 100 | Plus |
| CG7939-PA | 405 | RpL32-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-RD | 747 | CG7939-RD | 287..691 | 17..421 | 2025 | 100 | Plus |
| RpL32-RA | 578 | CG7939-RA | 90..494 | 17..421 | 2025 | 100 | Plus |
| RpL32-RC | 747 | CG7939-RC | 259..663 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30045313..30045625 | 421..109 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 30045687..30045779 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:31:20 has no hits.
BS13526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:38 Download gff for
BS13526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7939-PA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:36:17 Download gff for
BS13526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 254..671 | 12..433 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:00 Download gff for
BS13526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 254..671 | 12..433 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:00 Download gff for
BS13526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30045305..30045624 | 110..433 | 98 | <- | Minus |
| 3R | 30045687..30045784 | 12..109 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:36:17 Download gff for
BS13526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25871027..25871346 | 110..433 | 98 | <- | Minus |
| arm_3R | 25871409..25871506 | 12..109 | 97 | | Minus |
BS13526.pep Sequence
Translation from 16 to 420
> BS13526.pep
MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKG
QYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAH
GVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE*
BS13526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-PD | 134 | CG7939-PD | 1..134 | 1..134 | 705 | 100 | Plus |
| RpL32-PA | 134 | CG7939-PA | 1..134 | 1..134 | 705 | 100 | Plus |
| RpL32-PB | 134 | CG7939-PB | 1..134 | 1..134 | 705 | 100 | Plus |
| RpL32-PC | 147 | CG7939-PC | 14..147 | 1..134 | 705 | 100 | Plus |
