Clone Sequence Records
BS13530.complete Sequence
1400 bp assembled on 2009-12-07
GenBank Submission: KX801130
> BS13530.complete
GAAGTTATCAGTCGACATGTCTCCGCACGGACGTCCTGGTTGGGAATGGA
GCTACCTCCTGCTCACCCTGGCCGTGGGATTCGCATCCACCCACGGGTGG
ATGGCCCACTTTCGCCCAGCTGCGCTCACGTTGCAGATGGAGCGCGGGGA
TCGGGTGCAGCTCAAGCTGGAGAATGTGGCACCTTCCACGCTGCAGCAGC
CGACGCGTTACCACTTCCGCCTGGAAAGTGTGGACACGGATTTGGCCAGT
GTTCCAGGCGAGAATGCCACGATATCCCTGGATGTATTCAACACGGACAC
ACGCGACTGGACGGGTGACATCGTAGTTAATGGCCATTTTCTGGGACAGA
CCAAGATCCAAGTGAAGCTGTACGACAGCCAGCGAAACACCAGTGAACTG
CCCACCAATTGGAGCAACGACAGCACGCTGGACGTGAAGATCAAGCGACC
GAAACGTGTGGTGGATGACATATTCCTGGGTACGATCATACTACTAATGT
CGCTGCTGTACATCAGCTTTGGAGCCGCCCTAAATCTGGACGTGCTGAGG
GGTCTGATCACCCGGCCAACCGGCCCGTGCATCGGATTTGTGATGCAGGT
GGTGGGCATGCCTCTGCTCAGCTACGCCCTCGGCGTCTTCATCTTCCCCC
AGGCGCCGGCCATGCAGCTGGGTCTCTTCTTCACCGGCATCTCGCCCAGC
GGTGGGGCATCGAACACCTGGTCTGCCGTTCTCGGCGGTAATATACACCT
CTCGGTGCTAATGACCACCGTTTCTAATGTTGCTGCCTTCGCCACCATAC
CGCTGTGGACCATAACACTTGGCCAGCTGATCTTCGAGCGAGCGGGCATC
AAGGTGCCTTACGGCAAAATCGCCTCGTACAGCAGCAGCCTGGTCCTTCC
GCTCCTGCTCGGGCTGCTCGTCCAGAAGAGAATGCCTCAGGTCGCTAGGG
TGCTGGTCCGCCTGCTCAAGCCCGTCTCCGCCTTCATCATCCTGTTCATC
ATCGTGTTCGCGATCATCAACAACTTTTACCTGTTCTATTTGTTCTCCTG
GCAGATCGTCGTCGCTGGCATGGCTCTGCCTGGTCTGGGCTACATCTTCG
CCTTCCTGGCAGCCAAGCTGCTGCACCAAAATGCAGCCGACGCCCTGACC
ATCGCCATCGAGACGGGCATCCAGAACACGGGCATCGCCATCTTCCTGCT
GACGACCACGCTGGAATCGCCGGAGGCGGACATCACCACGGTGGTGCCCG
TATCGGTGGCCGTGATGACGCCGCTGCCCCTGCTGGGCATTTATCTGTAC
AACCGGTGCTGGGGCAACAAGCGAATTAGTGAGGCCAGCGCCACCGCCTC
CGAAGCGGAGCGGATAGCTGGGGCGATACATTAGAAGCTTTCTAGACCAT
BS13530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1368 | CG11655-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1720 | CG11655-RA | 105..1472 | 17..1384 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15453575..15454612 | 17..1054 | 5190 | 100 | Plus |
| X | 23542271 | X | 15454971..15455303 | 1052..1384 | 1665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:53:36 has no hits.
BS13530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:49 Download gff for
BS13530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 91..1458 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:43 Download gff for
BS13530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..1472 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:34 Download gff for
BS13530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 91..1458 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:19 Download gff for
BS13530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..1472 | 17..1384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:19 Download gff for
BS13530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15453575..15454612 | 17..1054 | 100 | -> | Plus |
| X | 15454974..15455303 | 1055..1384 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:43 Download gff for
BS13530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15349007..15349336 | 1055..1384 | 100 | | Plus |
| arm_X | 15347608..15348645 | 17..1054 | 100 | -> | Plus |
BS13530.5prime Sequence
507 bp (504 high quality bases) assembled on 2006-10-13
> BS13530.5prime
GAAGTTATCAGTCGACATGTCTCCGCACGGACGTCCTGGTTGGGAATGGA
GCTACCTCCTGCTCACCCTGGCCGTGGGATTCGCATCCACCCACGGGTGG
ATGGCCCACTTTCGCCCAGCTGCGCTCACGTTGCAGATGGAGCGCGGGGA
TCGGGTGCAGCTCAAGCTGGAGAATGTGGCACCTTCCACGCTGCAGCAGC
CGACGCGTTACCACTTCCGCCTGGAAAGTGTGGACACGGATTTGGCCAGT
GTTCCAGGCGAGAATGCCACGATATCCCTGGATGTATTCAACACGGACAC
ACGCGACTGGACGGGTGACATCGTAGTTAATGGCCATTTTCTGGGACAGA
CCAAGATCCAAGTGAAGCTGTACGACAGCCAGCGAAACACCAGTGAACTG
CCCACCAATTGGAGCAACGACAGCACGCTGGACGTGAAGATCAAGCGACC
GAAACGTGTGGTGGATGACATATTCCTGGGTACGATCATACTACTAATGT
CGCTGCT
BS13530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-PA | 1368 | CG11655-RA | 1..491 | 17..507 | 2455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1720 | CG11655-RA | 105..595 | 17..507 | 2455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15453575..15454065 | 17..507 | 2455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:15:27 has no hits.
BS13530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:39 Download gff for
BS13530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-PA | 1..491 | 17..507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:35:00 Download gff for
BS13530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..595 | 17..507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:23 Download gff for
BS13530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..595 | 17..507 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:23 Download gff for
BS13530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15453575..15454065 | 17..507 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:35:00 Download gff for
BS13530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15347608..15348098 | 17..507 | 100 | | Plus |
BS13530.3prime Sequence
491 bp (488 high quality bases) assembled on 2006-10-13
> BS13530.3prime
ATGGTCTAGAAAGCTTCTAATGTATCGCCCCAGCTATCCGCTCCGCTTCG
GAGGCGGTGGCGCTGGCCTCACTAATTCGCTTGTTGCCCCAGCACCGGTT
GTACAGATAAATGCCCAGCAGGGGCAGCGGCGTCATCACGGCCACCGATA
CGGGCACCACCGTGGTGATGTCCGCCTCCGGCGATTCCAGCGTGGTCGTC
AGCAGGAAGATGGCGATGCCCGTGTTCTGGATGCCCGTCTCGATGGCGAT
GGTCAGGGCGTCGGCTGCATTTTGGTGCAGCAGCTTGGCTGCCAGGAAGG
CGAAGATGTAGCCCAGACCAGGCAGAGCCATGCCAGCGACGACGATCTGC
CAGGAGAACAAATAGAACAGGTAAAAGTTGTTGATGATCGCGAACACGAT
GATGAACAGGATGATGAAGGCGGAGACGGGCTTGAGCAGGCGGACCAGCA
CCCTAGCGACCTGAGGCATTCTCTTCTGGACGAGCAGCCCG
BS13530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-PA | 1368 | CG11655-RA | 894..1368 | 491..17 | 2375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1720 | CG11655-RA | 998..1472 | 491..17 | 2375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15454971..15455303 | 349..17 | 1665 | 100 | Minus |
| X | 23542271 | X | 15454468..15454612 | 491..347 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:23:25 has no hits.
BS13530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:39 Download gff for
BS13530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-PA | 894..1368 | 17..491 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:48 Download gff for
BS13530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 998..1476 | 11..491 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:45:00 Download gff for
BS13530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 998..1476 | 11..491 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:45:00 Download gff for
BS13530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15454468..15454612 | 347..491 | 100 | -> | Minus |
| X | 15454974..15455307 | 11..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:48 Download gff for
BS13530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15348501..15348645 | 347..491 | 100 | -> | Minus |
| arm_X | 15349007..15349340 | 11..346 | 99 | | Minus |
BS13530.pep Sequence
Translation from 16 to 1383
> BS13530.pep
MSPHGRPGWEWSYLLLTLAVGFASTHGWMAHFRPAALTLQMERGDRVQLK
LENVAPSTLQQPTRYHFRLESVDTDLASVPGENATISLDVFNTDTRDWTG
DIVVNGHFLGQTKIQVKLYDSQRNTSELPTNWSNDSTLDVKIKRPKRVVD
DIFLGTIILLMSLLYISFGAALNLDVLRGLITRPTGPCIGFVMQVVGMPL
LSYALGVFIFPQAPAMQLGLFFTGISPSGGASNTWSAVLGGNIHLSVLMT
TVSNVAAFATIPLWTITLGQLIFERAGIKVPYGKIASYSSSLVLPLLLGL
LVQKRMPQVARVLVRLLKPVSAFIILFIIVFAIINNFYLFYLFSWQIVVA
GMALPGLGYIFAFLAAKLLHQNAADALTIAIETGIQNTGIAIFLLTTTLE
SPEADITTVVPVSVAVMTPLPLLGIYLYNRCWGNKRISEASATASEAERI
AGAIH*
BS13530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-PA | 455 | CG11655-PA | 1..455 | 1..455 | 2316 | 100 | Plus |
| CG9903-PA | 454 | CG9903-PA | 37..440 | 28..442 | 555 | 31.7 | Plus |
