Clone Sequence Records
BS13533.3prime Sequence
523 bp (474 high quality bases) assembled on 2006-10-13
> BS13533.3prime
ATGGTCTAGAAAGCTTTTAGACCATCTTGCGCAGCAGACGGTTGATCTGG
TCCTCGCGGTTGCCGAAGTCACCACCGTTGACATAATGGTTGGCCTTCTT
GCGCCAGCCGCCGGTGGGGGTGTTTAGCTTGAAGGGCCACAGGAAGTTGG
AGGCGTACTTGAAGTTGGGCCCCACGGTGAAGATCTCATGGACAAGATCC
TCGACGCACTGAATTTGGTGCGCCTGACGCAGCTTCCGCTCGATCACGAA
GTTATCGGTGATGGGCACGCGCTGGCGGTTATGCTTCACGAATCCACGCT
TGTAGATCAGCTCCCGCACGGACTTCAGATTGGGATAGCCCCAGGTGATG
TAGGGCTCGGCGATGCGCAGCATGTTGATGGTGGCCTTGTTCAGCTTGAT
GAACACACCGTTGTTGATCTGCCTCAGACGGAACAGCTGCAGAACCTTGC
GGACCTTGGGAGCCACCTTGTTGATACCGCGGATACGGACGACAAAGGCC
AATTTGGCCTCGGCGGGCACGTA
BS13533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4897-PA | 759 | RpL7-RA | 253..759 | 523..17 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 1167 | CG4897-RB | 398..904 | 523..17 | 2535 | 100 | Minus |
RpL7-RA | 895 | CG4897-RA | 302..808 | 523..17 | 2535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10201598..10202058 | 477..17 | 2305 | 100 | Minus |
2L | 23513712 | 2L | 10201482..10201528 | 523..477 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:43:43 has no hits.
BS13533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:40 Download gff for
BS13533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4897-PA | 254..759 | 17..522 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:36 Download gff for
BS13533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 303..808 | 17..522 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:33 Download gff for
BS13533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 303..808 | 17..522 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:33 Download gff for
BS13533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10201483..10201528 | 477..522 | 100 | -> | Minus |
2L | 10201599..10202058 | 17..476 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:36 Download gff for
BS13533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10201483..10201528 | 477..522 | 100 | -> | Minus |
arm_2L | 10201599..10202058 | 17..476 | 100 | | Minus |
BS13533.5prime Sequence
525 bp (500 high quality bases) assembled on 2006-10-13
> BS13533.5prime
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGT
BS13533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4897-PA | 759 | RpL7-RA | 1..509 | 17..525 | 2545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 1167 | CG4897-RB | 146..654 | 17..525 | 2545 | 100 | Plus |
RpL7-RA | 895 | CG4897-RA | 50..558 | 17..525 | 2545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10201230..10201528 | 17..315 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 10201598..10201808 | 315..525 | 1055 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 03:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 3786..3824 | 56..94 | 105 | 74.4 | Plus |
BS13533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:40 Download gff for
BS13533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4897-PA | 1..509 | 17..525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:52 Download gff for
BS13533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 42..558 | 10..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:22 Download gff for
BS13533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 42..558 | 10..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:22 Download gff for
BS13533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10201225..10201528 | 9..315 | 98 | -> | Plus |
2L | 10201599..10201808 | 316..525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:52 Download gff for
BS13533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10201225..10201528 | 9..315 | 98 | -> | Plus |
arm_2L | 10201599..10201808 | 316..525 | 100 | | Plus |
BS13533.complete Sequence
791 bp assembled on 2006-11-01
GenBank Submission: FJ637480
> BS13533.complete
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATC
GAGCGGAAGCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGT
CCATGAGATCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCC
TGTGGCCCTTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCC
AACCATTATGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATCAA
CCGTCTGCTGCGCAAGATGGTCTAAAAGCTTTCTAGACCAT
BS13533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 759 | CG4897-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
RpL7-RA | 759 | CG4897-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 1167 | CG4897-RB | 146..904 | 17..775 | 3795 | 100 | Plus |
RpL7-RA | 895 | CG4897-RA | 50..808 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10201598..10202058 | 315..775 | 2305 | 100 | Plus |
2L | 23513712 | 2L | 10201230..10201528 | 17..315 | 1495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:00:17 has no hits.
BS13533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:28 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:34 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 41..807 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:57 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 50..806 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:28 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 41..807 | 10..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:10 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 50..806 | 17..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:10 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10201230..10201528 | 17..315 | 100 | -> | Plus |
2L | 10201599..10202056 | 316..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:57 Download gff for
BS13533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10201230..10201528 | 17..315 | 100 | -> | Plus |
arm_2L | 10201599..10202056 | 316..773 | 100 | | Plus |
BS13533.pep Sequence
Translation from 16 to 774
> BS13533.pep
MPAPVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRK
KENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG
INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNL
KSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFT
VGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRK
MV*
BS13533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-PB | 252 | CG4897-PB | 1..252 | 1..252 | 1294 | 100 | Plus |
RpL7-PA | 252 | CG4897-PA | 1..252 | 1..252 | 1294 | 100 | Plus |
RpL7-like-PC | 257 | CG5317-PC | 4..255 | 7..250 | 344 | 33.3 | Plus |
RpL7-like-PB | 257 | CG5317-PB | 4..255 | 7..250 | 344 | 33.3 | Plus |
RpL7-like-PA | 257 | CG5317-PA | 4..255 | 7..250 | 344 | 33.3 | Plus |