Clone BS13533 Report

Search the DGRC for BS13533

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptRpL7-RA
Protein status:BS13533.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13533.3prime Sequence

523 bp (474 high quality bases) assembled on 2006-10-13

> BS13533.3prime
ATGGTCTAGAAAGCTTTTAGACCATCTTGCGCAGCAGACGGTTGATCTGG
TCCTCGCGGTTGCCGAAGTCACCACCGTTGACATAATGGTTGGCCTTCTT
GCGCCAGCCGCCGGTGGGGGTGTTTAGCTTGAAGGGCCACAGGAAGTTGG
AGGCGTACTTGAAGTTGGGCCCCACGGTGAAGATCTCATGGACAAGATCC
TCGACGCACTGAATTTGGTGCGCCTGACGCAGCTTCCGCTCGATCACGAA
GTTATCGGTGATGGGCACGCGCTGGCGGTTATGCTTCACGAATCCACGCT
TGTAGATCAGCTCCCGCACGGACTTCAGATTGGGATAGCCCCAGGTGATG
TAGGGCTCGGCGATGCGCAGCATGTTGATGGTGGCCTTGTTCAGCTTGAT
GAACACACCGTTGTTGATCTGCCTCAGACGGAACAGCTGCAGAACCTTGC
GGACCTTGGGAGCCACCTTGTTGATACCGCGGATACGGACGACAAAGGCC
AATTTGGCCTCGGCGGGCACGTA

BS13533.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4897-PA 759 RpL7-RA 253..759 523..17 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 1167 CG4897-RB 398..904 523..17 2535 100 Minus
RpL7-RA 895 CG4897-RA 302..808 523..17 2535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10201598..10202058 477..17 2305 100 Minus
2L 23513712 2L 10201482..10201528 523..477 235 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:43:43 has no hits.

BS13533.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:40 Download gff for BS13533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4897-PA 254..759 17..522 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:36 Download gff for BS13533.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 303..808 17..522 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:33 Download gff for BS13533.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 303..808 17..522 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:33 Download gff for BS13533.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10201483..10201528 477..522 100 -> Minus
2L 10201599..10202058 17..476 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:36 Download gff for BS13533.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10201483..10201528 477..522 100 -> Minus
arm_2L 10201599..10202058 17..476 100   Minus

BS13533.5prime Sequence

525 bp (500 high quality bases) assembled on 2006-10-13

> BS13533.5prime
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGT

BS13533.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4897-PA 759 RpL7-RA 1..509 17..525 2545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 1167 CG4897-RB 146..654 17..525 2545 100 Plus
RpL7-RA 895 CG4897-RA 50..558 17..525 2545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10201230..10201528 17..315 1495 100 Plus
2L 23513712 2L 10201598..10201808 315..525 1055 100 Plus
Blast to na_te.dros performed 2015-02-12 03:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 3786..3824 56..94 105 74.4 Plus

BS13533.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:40 Download gff for BS13533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4897-PA 1..509 17..525 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:52 Download gff for BS13533.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 42..558 10..525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:22 Download gff for BS13533.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 42..558 10..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:22 Download gff for BS13533.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10201225..10201528 9..315 98 -> Plus
2L 10201599..10201808 316..525 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:52 Download gff for BS13533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10201225..10201528 9..315 98 -> Plus
arm_2L 10201599..10201808 316..525 100   Plus

BS13533.complete Sequence

791 bp assembled on 2006-11-01

GenBank Submission: FJ637480

> BS13533.complete
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATC
GAGCGGAAGCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGT
CCATGAGATCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCC
TGTGGCCCTTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCC
AACCATTATGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATCAA
CCGTCTGCTGCGCAAGATGGTCTAAAAGCTTTCTAGACCAT

BS13533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 759 CG4897-PB 1..759 17..775 3795 100 Plus
RpL7-RA 759 CG4897-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 1167 CG4897-RB 146..904 17..775 3795 100 Plus
RpL7-RA 895 CG4897-RA 50..808 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10201598..10202058 315..775 2305 100 Plus
2L 23513712 2L 10201230..10201528 17..315 1495 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:00:17 has no hits.

BS13533.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:28 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:34 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 41..807 10..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:57 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 50..806 17..773 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:28 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 41..807 10..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:10 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 50..806 17..773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:10 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10201230..10201528 17..315 100 -> Plus
2L 10201599..10202056 316..773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:57 Download gff for BS13533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10201230..10201528 17..315 100 -> Plus
arm_2L 10201599..10202056 316..773 100   Plus

BS13533.pep Sequence

Translation from 16 to 774

> BS13533.pep
MPAPVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRK
KENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG
INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNL
KSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFT
VGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRK
MV*

BS13533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-PB 252 CG4897-PB 1..252 1..252 1294 100 Plus
RpL7-PA 252 CG4897-PA 1..252 1..252 1294 100 Plus
RpL7-like-PC 257 CG5317-PC 4..255 7..250 344 33.3 Plus
RpL7-like-PB 257 CG5317-PB 4..255 7..250 344 33.3 Plus
RpL7-like-PA 257 CG5317-PA 4..255 7..250 344 33.3 Plus