Clone Sequence Records
BS13541.5prime Sequence
497 bp (465 high quality bases) assembled on 2006-10-13
> BS13541.5prime
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACTAAAAGCTTTCTAGACCAT
BS13541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2981-PA | 465 | TpnC41C-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 1880 | CG2981-RB | 224..690 | 17..483 | 2335 | 100 | Plus |
TpnC41C-RA | 821 | CG2981-RA | 224..690 | 17..483 | 2335 | 100 | Plus |
TpnC47D-RB | 791 | CG9073-RB | 439..503 | 392..456 | 205 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5066528..5066923 | 446..51 | 1980 | 100 | Minus |
2R | 25286936 | 2R | 5066427..5066464 | 483..446 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:57:44 has no hits.
BS13541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:45 Download gff for
BS13541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2981-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:45 Download gff for
BS13541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..690 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:39 Download gff for
BS13541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..690 | 17..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:39 Download gff for
BS13541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5066427..5066463 | 447..483 | 100 | <- | Minus |
2R | 5066528..5066923 | 51..446 | 100 | <- | Minus |
2R | 5066977..5067006 | 20..50 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:45 Download gff for
BS13541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 953932..953968 | 447..483 | 100 | <- | Minus |
arm_2R | 954033..954428 | 51..446 | 100 | <- | Minus |
arm_2R | 954482..954511 | 20..50 | 96 | | Minus |
BS13541.complete Sequence
497 bp assembled on 2006-11-01
GenBank Submission: FJ637481
> BS13541.complete
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACTAAAAGCTTTCTAGACCAT
BS13541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 465 | CG2981-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
TpnC41C-RA | 465 | CG2981-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
TpnC47D-RB | 468 | CG9073-PB | 385..449 | 392..456 | 205 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 1880 | CG2981-RB | 224..690 | 17..483 | 2335 | 100 | Plus |
TpnC41C-RA | 821 | CG2981-RA | 224..690 | 17..483 | 2335 | 100 | Plus |
TpnC47D-RB | 791 | CG9073-RB | 439..503 | 392..456 | 205 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5066528..5066923 | 446..51 | 1980 | 100 | Minus |
2R | 25286936 | 2R | 5066427..5066464 | 483..446 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:28 has no hits.
BS13541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:46 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:28 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..690 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:06 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..686 | 17..479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:46 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..690 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:00 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..686 | 17..479 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:00 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5066528..5066923 | 51..446 | 100 | <- | Minus |
2R | 5066977..5067007 | 17..50 | 91 | | Minus |
2R | 5066431..5066463 | 447..479 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:06 Download gff for
BS13541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 953936..953968 | 447..479 | 100 | <- | Minus |
arm_2R | 954033..954428 | 51..446 | 100 | <- | Minus |
arm_2R | 954482..954512 | 17..50 | 91 | | Minus |
BS13541.pep Sequence
Translation from 16 to 480
> BS13541.pep
MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLA
DIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEG
NGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT
GGDD*
BS13541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-PB | 154 | CG2981-PB | 1..154 | 1..154 | 778 | 100 | Plus |
TpnC41C-PA | 154 | CG2981-PA | 1..154 | 1..154 | 778 | 100 | Plus |
TpnC47D-PB | 155 | CG9073-PB | 4..154 | 1..151 | 498 | 64.2 | Plus |
TpnC47D-PA | 155 | CG9073-PA | 4..154 | 1..151 | 498 | 64.2 | Plus |
TpnC73F-PC | 155 | CG7930-PC | 4..154 | 1..151 | 494 | 63.6 | Plus |