Clone BS13541 Report

Search the DGRC for BS13541

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptTpnC41C-RA
Protein status:BS13541.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13541.5prime Sequence

497 bp (465 high quality bases) assembled on 2006-10-13

> BS13541.5prime
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACTAAAAGCTTTCTAGACCAT

BS13541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2981-PA 465 TpnC41C-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 1880 CG2981-RB 224..690 17..483 2335 100 Plus
TpnC41C-RA 821 CG2981-RA 224..690 17..483 2335 100 Plus
TpnC47D-RB 791 CG9073-RB 439..503 392..456 205 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5066528..5066923 446..51 1980 100 Minus
2R 25286936 2R 5066427..5066464 483..446 190 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:57:44 has no hits.

BS13541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:45 Download gff for BS13541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2981-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:45 Download gff for BS13541.5prime
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..690 17..483 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:39 Download gff for BS13541.5prime
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..690 17..483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:39 Download gff for BS13541.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5066427..5066463 447..483 100 <- Minus
2R 5066528..5066923 51..446 100 <- Minus
2R 5066977..5067006 20..50 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:45 Download gff for BS13541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 953932..953968 447..483 100 <- Minus
arm_2R 954033..954428 51..446 100 <- Minus
arm_2R 954482..954511 20..50 96   Minus

BS13541.complete Sequence

497 bp assembled on 2006-11-01

GenBank Submission: FJ637481

> BS13541.complete
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACTAAAAGCTTTCTAGACCAT

BS13541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 465 CG2981-PB 1..465 17..481 2325 100 Plus
TpnC41C-RA 465 CG2981-PA 1..465 17..481 2325 100 Plus
TpnC47D-RB 468 CG9073-PB 385..449 392..456 205 87.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 1880 CG2981-RB 224..690 17..483 2335 100 Plus
TpnC41C-RA 821 CG2981-RA 224..690 17..483 2335 100 Plus
TpnC47D-RB 791 CG9073-RB 439..503 392..456 205 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5066528..5066923 446..51 1980 100 Minus
2R 25286936 2R 5066427..5066464 483..446 190 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:28 has no hits.

BS13541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:46 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:28 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..690 17..483 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:06 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..686 17..479 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:46 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..690 17..483 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:00 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..686 17..479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:00 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5066528..5066923 51..446 100 <- Minus
2R 5066977..5067007 17..50 91   Minus
2R 5066431..5066463 447..479 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:06 Download gff for BS13541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 953936..953968 447..479 100 <- Minus
arm_2R 954033..954428 51..446 100 <- Minus
arm_2R 954482..954512 17..50 91   Minus

BS13541.pep Sequence

Translation from 16 to 480

> BS13541.pep
MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLA
DIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEG
NGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT
GGDD*

BS13541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-PB 154 CG2981-PB 1..154 1..154 778 100 Plus
TpnC41C-PA 154 CG2981-PA 1..154 1..154 778 100 Plus
TpnC47D-PB 155 CG9073-PB 4..154 1..151 498 64.2 Plus
TpnC47D-PA 155 CG9073-PA 4..154 1..151 498 64.2 Plus
TpnC73F-PC 155 CG7930-PC 4..154 1..151 494 63.6 Plus