Clone Sequence Records
BS13543.5prime Sequence
339 bp (339 high quality bases) assembled on 2006-10-13
> BS13543.5prime
GAAGTTATCAGTCGACATGGCTCGCTACACGTACCTTGTCGCCCTTGTGC
TTCTGGCCATTTGCTGCCAGTGGGGATACTGCGGCGCCATGGCCATGCCG
GATGAGGAGCGCTATGTGCGCAAGGAGTACAATCGGGATCTCCTCGACTG
GTTCAACAACGTGGGCGTGGGACAGTTCAGTCCCGGCCAAGTGGCCACTC
TCTGTCGCTATCCGCTGATCCTCGAGAACTCCTTGGGCCCATCCGTGCCC
ATCAGGAAGCGCAACTCGGAGCTAATCAACTCCTTGTTGAGTCTGCCCAA
GAACATGAACGATGCGGGCAAGTAAAAGCTTTCTAGACC
BS13543.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6496-PA | 309 | Pdf-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdf-RA | 680 | CG6496-RA | 79..387 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26455755..26456063 | 325..17 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:44:17 has no hits.
BS13543.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:46 Download gff for
BS13543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6496-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:42 Download gff for
BS13543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..387 | 8..325 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:37 Download gff for
BS13543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..387 | 8..325 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:37 Download gff for
BS13543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26455755..26456071 | 8..325 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:42 Download gff for
BS13543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22281477..22281793 | 8..325 | 98 | | Minus |
BS13543.3prime Sequence
339 bp (339 high quality bases) assembled on 2006-10-13
> BS13543.3prime
ATGGTCTAGAAAGCTTTTACTTGCCCGCATCGTTCATGTTCTTGGGCAGA
CTCAACAAGGAGTTGATTAGCTCCGAGTTGCGCTTCCTGATGGGCACGGA
TGGGCCCAAGGAGTTCTCGAGGATCAGCGGATAGCGACAGAGAGTGGCCA
CTTGGCCGGGACTGAACTGTCCCACGCCCACGTTGTTGAACCAGTCGAGG
AGATCCCGATTGTACTCCTTGCGCACATAGCGCTCCTCATCCGGCATGGC
CATGGCGCCGCAGTATCCCCACTGGCAGCAAATGGCCAGAAGCACAAGGG
CGACAAGGTACGTGTAGCGAGCCATGTCGACTGATAACT
BS13543.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6496-PA | 309 | Pdf-RA | 1..309 | 325..17 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdf-RA | 680 | CG6496-RA | 79..387 | 325..17 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26455755..26456063 | 17..325 | 1545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:52:39 has no hits.
BS13543.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:45 Download gff for
BS13543.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6496-PA | 1..309 | 17..325 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:17 Download gff for
BS13543.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..387 | 17..334 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:55 Download gff for
BS13543.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..387 | 17..334 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:55 Download gff for
BS13543.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26455755..26456071 | 17..334 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:17 Download gff for
BS13543.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22281477..22281793 | 17..334 | 98 | | Plus |
BS13543.complete Sequence
341 bp assembled on 2006-11-01
GenBank Submission: FJ637482
> BS13543.complete
GAAGTTATCAGTCGACATGGCTCGCTACACGTACCTTGTCGCCCTTGTGC
TTCTGGCCATTTGCTGCCAGTGGGGATACTGCGGCGCCATGGCCATGCCG
GATGAGGAGCGCTATGTGCGCAAGGAGTACAATCGGGATCTCCTCGACTG
GTTCAACAACGTGGGCGTGGGACAGTTCAGTCCCGGCCAAGTGGCCACTC
TCTGTCGCTATCCGCTGATCCTCGAGAACTCCTTGGGCCCATCCGTGCCC
ATCAGGAAGCGCAACTCGGAGCTAATCAACTCCTTGTTGAGTCTGCCCAA
GAACATGAACGATGCGGGCAAGTAAAAGCTTTCTAGACCAT
BS13543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdf-RA | 309 | CG6496-PA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdf-RA | 680 | CG6496-RA | 79..387 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26455755..26456063 | 325..17 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:42 has no hits.
BS13543.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:18 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:28 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..387 | 8..325 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:38 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 79..385 | 17..323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:18 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 71..387 | 8..325 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:27 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdf-RA | 79..385 | 17..323 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:27 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26455757..26456063 | 17..323 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:38 Download gff for
BS13543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22281479..22281785 | 17..323 | 100 | | Minus |
BS13543.pep Sequence
Translation from 16 to 324
> BS13543.pep
MARYTYLVALVLLAICCQWGYCGAMAMPDEERYVRKEYNRDLLDWFNNVG
VGQFSPGQVATLCRYPLILENSLGPSVPIRKRNSELINSLLSLPKNMNDA
GK*
BS13543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdf-PA | 102 | CG6496-PA | 1..102 | 1..102 | 545 | 100 | Plus |
