Clone Sequence Records
BS13559.3prime Sequence
677 bp (652 high quality bases) assembled on 2006-10-13
> BS13559.3prime
ATGGTCTAGAAAGCTTTCACTTTCCAATGCAAAAGTCCTTGAAGACCACG
TCGAGTATATCTTCGCAGCTGATGTGTCCGGTGATGCGTTCGATGCAGCG
CACGGAGTTGCGCAGCTTGGAGGCGGCTATGGCCATGTCCGGGTAAACGT
CGGGTCTGTAATCTCGTAGAAAAATATCAATGTTCTCAATGCAGCGCTCC
AGTTGCTGACGGTAGCGTGTGTTTGTGATGCGTGGATTCTCCGCCCGCGG
TTCTCCGCACAGTTCTTGCAGCTGCTTCTCCAGTGATCCCAGAAACACGG
GCATCTTATCGGGCTTATGGCATGATATGGCTAACACGTTGGACAGCTTG
TCCAGCTGCTGATGCTCCTCATCCGTCAAAGTGTCGGTTTTATTGGCCAC
CAATTGCAGACGTTTCCCTGAGCACATGTCCAGAGGTATATCCAACTCGC
CCAGATAGCTATCTACAAACGGAGCAACTGCGTCGTCGTGCGTCAGCTGT
GCAATGTTCTTGGCTTCTGCTAGGAGCAATATCAAATCAGATTGGACTAG
ACAATTCTTGGCTCTCTGCATTCCCTCCTGCTCTATACTATCCGTAGTAT
ATCGGCGTAATCCGGCTGTGTCGGAAAATACCACCGGGTATCCTCCGAAA
TTGTGCATTGTTTCCATAATATCCCTT
BS13559.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-PA | 1482 | CG18528-RA | 822..1482 | 677..17 | 3280 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-RA | 1676 | CG18528-RA | 900..1561 | 677..16 | 3295 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24358210..24358871 | 16..677 | 3295 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 16:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 5083..5123 | 155..195 | 106 | 73.2 | Plus |
BS13559.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:55 Download gff for
BS13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-PA | 822..1482 | 17..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:07:38 Download gff for
BS13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 900..1561 | 16..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:32 Download gff for
BS13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 900..1561 | 16..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:32 Download gff for
BS13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24358210..24358871 | 16..677 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:07:38 Download gff for
BS13559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20183932..20184593 | 16..677 | 99 | | Plus |
BS13559.5prime Sequence
680 bp (611 high quality bases) assembled on 2006-10-13
> BS13559.5prime
GAAGTTATCAGTCGACATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCT
TGGGCAGTTTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTC
AGTTCCGGTCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCC
GCAAACAAAGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGC
CAAAGGCTCGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAA
GAGATGATTGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTT
CACTGGCGAGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCA
TTGCGGCCATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCG
GAGCCGGGAGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTT
GACAGAGGTGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGC
AAAGAAAGCAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTAC
GACAACTGGCGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTA
CATAGACTTCGCCGAAGAGGAGCAAATCGAAGGCGGCATCATCCTGCAAC
TCGGCAAAGAACTAAAGGCGGTAAAGCGTG
BS13559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-PA | 1482 | CG18528-RA | 1..664 | 17..680 | 3320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-RA | 1676 | CG18528-RA | 79..742 | 17..680 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24359253..24359561 | 512..204 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 24359876..24360066 | 207..17 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 24359029..24359200 | 680..509 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:16:22 has no hits.
BS13559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:41:55 Download gff for
BS13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-PA | 1..664 | 17..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:35:07 Download gff for
BS13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 73..742 | 8..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:18 Download gff for
BS13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 73..742 | 8..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:18 Download gff for
BS13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24359029..24359197 | 512..680 | 100 | <- | Minus |
| 3R | 24359254..24359559 | 206..511 | 100 | <- | Minus |
| 3R | 24359878..24360072 | 8..205 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:35:07 Download gff for
BS13559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20185600..20185794 | 8..205 | 97 | | Minus |
| arm_3R | 20184751..20184919 | 512..680 | 100 | <- | Minus |
| arm_3R | 20184976..20185281 | 206..511 | 100 | <- | Minus |
BS13559.complete Sequence
1514 bp assembled on 2010-05-13
GenBank Submission: KX803801
> BS13559.complete
GAAGTTATCAGTCGACATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCT
TGGGCAGTTTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTC
AGTTCCGGTCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCC
GCAAACAAAGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGC
CAAAGGCTCGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAA
GAGATGATTGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTT
CACTGGCGAGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCA
TTGCGGCCATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCG
GAGCCGGGAGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTT
GACAGAGGTGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGC
AAAGAAAGCAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTAC
GACAACTGGCGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTA
CATAGACTTCGCCGAAGAGGAGCAAATCGAAGGCGGCATCATCCTGCAAC
TCGGCAAAGAACTAAAGGCGGTAAAGCGTGAGATTCGCGAGCATTTGAGT
GACCAGCGGCAGGGAGAGCTCCTCCGCGACGGAGTCCGCACTGTGATCAT
TGGAGCACCCAATGTTGGCAAGAGTAGTCTGCTCAATCTCCTCTGCCAGC
GATCCGTGTCCATAGTGACGGATCAGGCGGGCACCACAAGGGATATTATA
GAAACAATGCACAATTTCGGAGGATACCCGGTGGTATTTTCCGACACAGC
CGGATTACGCCGATATACTACGGATAGTATAGAGCAGGAGGGAATGCAGA
GAGCCAAGAATTGTCTAGTCCAATCTGATTTGATATTGCTCCTAGCAGAA
GCCAAGAACATTGCACAGCTGACGCACGACGACGCAGTTGCTCCGTTTGT
AGATAGCTATCTGGGCGAGTTGGATATACCTCTGGACATGTGCTCAGGGA
AACGTCTGCAATTGGTGGCCAATAAAACCGACACTTTGACGGATGAGGAG
CATCAGCAGCTGGACAAGCTGTCCAACGTGTTAGCCATATCATGCCATAA
GCCCGATAAGATGCCCGTGTTTCTGGGATCACTGGAGAAGCAGCTGCAAG
AACTGTGCGGAGAACCGCGGGCGGAGAATCCACGCATCACAAACACACGC
TACCGTCAGCAACTGGAGCGCTGCATTGAGAACATTGATATTTTTCTACG
AGATTACAGACCCGACGTTTACCCGGACATGGCCATAGCCGCCTCCAAGC
TGCGCAACTCCGTGCGCTGCATCGAACGCATCACCGGACACATCAGCTGC
GAAGATATACTCGACGTGGTCTTCAAGGACTTTTGCATTGGAAAGTGAAA
GCTTTCTAGACCAT
BS13559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-RA | 1482 | CG18528-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-RA | 1676 | CG18528-RA | 79..1561 | 17..1499 | 7415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24358210..24359200 | 1499..509 | 4955 | 100 | Minus |
| 3R | 32079331 | 3R | 24359253..24359561 | 512..204 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 24359876..24360066 | 207..17 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:15:20 has no hits.
BS13559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:44 Download gff for
BS13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 61..1541 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:49 Download gff for
BS13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 79..1559 | 17..1497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:13 Download gff for
BS13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 79..1559 | 17..1497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:13 Download gff for
BS13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24359878..24360066 | 17..205 | 100 | | Minus |
| 3R | 24359254..24359559 | 206..511 | 100 | <- | Minus |
| 3R | 24358212..24359197 | 512..1497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:49 Download gff for
BS13559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20183934..20184919 | 512..1497 | 100 | <- | Minus |
| arm_3R | 20184976..20185281 | 206..511 | 100 | <- | Minus |
| arm_3R | 20185600..20185788 | 17..205 | 100 | | Minus |
BS13559.pep Sequence
Translation from 16 to 1497
> BS13559.pep
MALLRNASQSFLGSFRRFASSGCTIYSLSSGHVKCGVSVIRVSGPQTKKA
LRAIVANKEYEPKARQAYLKSFYHPASKEMIDRGLLLWFPGPASFTGEDS
CEFQVHGSLAVIAAMLDALGKVDGLRPAEPGEFTKRAFFGGKLDLTEVEG
LADLIHAETEAQRKQALLQSTGALARLYDNWRRRLIRCAAHLEAYIDFAE
EEQIEGGIILQLGKELKAVKREIREHLSDQRQGELLRDGVRTVIIGAPNV
GKSSLLNLLCQRSVSIVTDQAGTTRDIIETMHNFGGYPVVFSDTAGLRRY
TTDSIEQEGMQRAKNCLVQSDLILLLAEAKNIAQLTHDDAVAPFVDSYLG
ELDIPLDMCSGKRLQLVANKTDTLTDEEHQQLDKLSNVLAISCHKPDKMP
VFLGSLEKQLQELCGEPRAENPRITNTRYRQQLERCIENIDIFLRDYRPD
VYPDMAIAASKLRNSVRCIERITGHISCEDILDVVFKDFCIGK*
BS13559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-PA | 493 | CG18528-PA | 1..493 | 1..493 | 2527 | 100 | Plus |
