Clone BS13575 Report

Search the DGRC for BS13575

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG9360-RA
Protein status:BS13575.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13575.3prime Sequence

527 bp (492 high quality bases) assembled on 2006-10-13

> BS13575.3prime
ATGGTCTAGAAAGCTTCTAGAGGGTTTCGCCGACAGGCTTGATGGTCAGC
TCGTGAATCTGGACATTTGGCGGGGTCTGGATGCAGTAGCTAATGGCATC
GGCCACATCCTCAGAGCGGAGCATTGGAAAGTCGGGAATGCCAACGAGAG
CCTCCTTGTCGATGATCTCGGTGTCCACGGCACCGGGACTGATGCTCGTA
ATCTTGGTCTGGGTCTTGTTGTTGTGGAACTCCTGACGCAGCACCTCCGT
GAGAGCGGTGACTGCGTACTTCGATGGCGAATACATGCCCATGGTGATGC
CTGGGTTGTTGATCACCCGGTGTCCGGCCACACTGTTGACAATCAGGATG
TGTCCATCGTTAACATTGCGTCTCTTCAGTGATTTGAAAGCCTCGCGGGT
GCACCACGAAACGCCCAGGACATTGGTATCCAGAATGGCACGAAGATCAG
CGCCATTACCCTCGTGGGTGATGCCCACACCGAGGCGAACAATGCCAGCG
TTGTTGACCAGCACATCGGCACCGCCC

BS13575.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-PA 756 CG9360-RA 246..756 527..17 2555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 1035 CG9360-RA 355..866 527..16 2560 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11763906..11764236 197..527 1655 100 Plus
X 23542271 X 11763643..11763824 16..197 910 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:52:51 has no hits.

BS13575.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:06 Download gff for BS13575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-PA 246..756 17..527 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:18 Download gff for BS13575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 355..873 5..527 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:57 Download gff for BS13575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 355..873 5..527 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:57 Download gff for BS13575.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11763636..11763823 5..196 97 <- Plus
X 11763906..11764236 197..527 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:18 Download gff for BS13575.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657669..11657856 5..196 97 <- Plus
arm_X 11657939..11658269 197..527 100   Plus

BS13575.5prime Sequence

534 bp (504 high quality bases) assembled on 2006-10-13

> BS13575.5prime
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGC

BS13575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-PA 756 CG9360-RA 1..518 17..534 2590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 1035 CG9360-RA 110..627 17..534 2590 100 Plus
CG3301-RC 814 CG3301-RC 38..451 16..432 280 72.1 Plus
CG3301-RB 1101 CG3301-RB 38..451 16..432 280 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11763964..11764481 534..17 2590 100 Minus
3R 32079331 3R 21275937..21276212 291..16 270 73.2 Minus
X 23542271 X 8974162..8974227 82..17 210 87.9 Minus
Blast to na_te.dros performed on 2015-02-12 17:43:07 has no hits.

BS13575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:06 Download gff for BS13575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-PA 1..518 17..534 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:53 Download gff for BS13575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..627 17..534 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:32 Download gff for BS13575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..627 17..534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:32 Download gff for BS13575.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11763964..11764481 17..534 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:53 Download gff for BS13575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657997..11658514 17..534 100   Minus

BS13575.complete Sequence

788 bp assembled on 2006-11-01

GenBank Submission: FJ637483

> BS13575.complete
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGCTCTCACGGAGGTGCTG
CGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGAGCATCAG
TCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGGCTCTCGTTGGCA
TTCCCGACTTTCCAATGCTCCGCTCTGAGGATGTGGCCGATGCCATTAGC
TACTGCATCCAGACCCCGCCAAATGTCCAGATTCACGAGCTGACCATCAA
GCCTGTCGGCGAAACCCTCTAGAAGCTTTCTAGACCAT

BS13575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 756 CG9360-PA 1..756 17..772 3780 100 Plus
CG3301-RC 753 CG3301-PC 16..275 32..291 265 73.5 Plus
CG3301-RB 753 CG3301-PB 16..275 32..291 265 73.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 1035 CG9360-RA 110..866 17..773 3785 100 Plus
CG3301-RC 814 CG3301-RC 38..313 16..291 270 73.2 Plus
CG3301-RB 1101 CG3301-RB 38..313 16..291 270 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11763906..11764481 592..17 2880 100 Minus
X 23542271 X 11763643..11763824 773..592 910 100 Minus
3R 32079331 3R 21275937..21276212 291..16 270 73.2 Minus
X 23542271 X 8974162..8974227 82..17 210 87.9 Minus
Blast to na_te.dros performed on 2014-11-27 14:56:32 has no hits.

BS13575.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:07 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:50 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 108..871 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:09 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..865 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:07 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 108..871 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:21 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..865 17..772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:21 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
X 11763644..11763823 593..772 100 <- Minus
X 11763906..11764481 17..592 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:09 Download gff for BS13575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657677..11657856 593..772 100 <- Minus
arm_X 11657939..11658514 17..592 100   Minus

BS13575.pep Sequence

Translation from 16 to 771

> BS13575.pep
MDRWLNRVAVVTGASSGIGAACCKDLVSKGLVVVGLARREDRLQELKASL
PADQASRFHGRKCDVSQEQEVIDAFAWIDATLGGADVLVNNAGIVRLGVG
ITHEGNGADLRAILDTNVLGVSWCTREAFKSLKRRNVNDGHILIVNSVAG
HRVINNPGITMGMYSPSKYAVTALTEVLRQEFHNNKTQTKITSISPGAVD
TEIIDKEALVGIPDFPMLRSEDVADAISYCIQTPPNVQIHELTIKPVGET
L*

BS13575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-PA 251 CG9360-PA 1..251 1..251 1286 100 Plus
CG3301-PC 250 CG3301-PC 1..248 1..249 888 69.5 Plus
CG3301-PB 250 CG3301-PB 1..248 1..249 888 69.5 Plus
CG3301-PA 250 CG3301-PA 1..248 1..249 888 69.5 Plus
CG9150-PB 251 CG9150-PB 1..249 1..249 645 49.8 Plus