Clone Sequence Records
BS13575.3prime Sequence
527 bp (492 high quality bases) assembled on 2006-10-13
> BS13575.3prime
ATGGTCTAGAAAGCTTCTAGAGGGTTTCGCCGACAGGCTTGATGGTCAGC
TCGTGAATCTGGACATTTGGCGGGGTCTGGATGCAGTAGCTAATGGCATC
GGCCACATCCTCAGAGCGGAGCATTGGAAAGTCGGGAATGCCAACGAGAG
CCTCCTTGTCGATGATCTCGGTGTCCACGGCACCGGGACTGATGCTCGTA
ATCTTGGTCTGGGTCTTGTTGTTGTGGAACTCCTGACGCAGCACCTCCGT
GAGAGCGGTGACTGCGTACTTCGATGGCGAATACATGCCCATGGTGATGC
CTGGGTTGTTGATCACCCGGTGTCCGGCCACACTGTTGACAATCAGGATG
TGTCCATCGTTAACATTGCGTCTCTTCAGTGATTTGAAAGCCTCGCGGGT
GCACCACGAAACGCCCAGGACATTGGTATCCAGAATGGCACGAAGATCAG
CGCCATTACCCTCGTGGGTGATGCCCACACCGAGGCGAACAATGCCAGCG
TTGTTGACCAGCACATCGGCACCGCCC
BS13575.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-PA | 756 | CG9360-RA | 246..756 | 527..17 | 2555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 1035 | CG9360-RA | 355..866 | 527..16 | 2560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11763906..11764236 | 197..527 | 1655 | 100 | Plus |
X | 23542271 | X | 11763643..11763824 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:52:51 has no hits.
BS13575.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:06 Download gff for
BS13575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-PA | 246..756 | 17..527 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:18 Download gff for
BS13575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 355..873 | 5..527 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:57 Download gff for
BS13575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 355..873 | 5..527 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:57 Download gff for
BS13575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763636..11763823 | 5..196 | 97 | <- | Plus |
X | 11763906..11764236 | 197..527 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:18 Download gff for
BS13575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657669..11657856 | 5..196 | 97 | <- | Plus |
arm_X | 11657939..11658269 | 197..527 | 100 | | Plus |
BS13575.5prime Sequence
534 bp (504 high quality bases) assembled on 2006-10-13
> BS13575.5prime
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGC
BS13575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-PA | 756 | CG9360-RA | 1..518 | 17..534 | 2590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 1035 | CG9360-RA | 110..627 | 17..534 | 2590 | 100 | Plus |
CG3301-RC | 814 | CG3301-RC | 38..451 | 16..432 | 280 | 72.1 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..451 | 16..432 | 280 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11763964..11764481 | 534..17 | 2590 | 100 | Minus |
3R | 32079331 | 3R | 21275937..21276212 | 291..16 | 270 | 73.2 | Minus |
X | 23542271 | X | 8974162..8974227 | 82..17 | 210 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:43:07 has no hits.
BS13575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:06 Download gff for
BS13575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-PA | 1..518 | 17..534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:53 Download gff for
BS13575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..627 | 17..534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:32 Download gff for
BS13575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..627 | 17..534 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:32 Download gff for
BS13575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763964..11764481 | 17..534 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:53 Download gff for
BS13575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657997..11658514 | 17..534 | 100 | | Minus |
BS13575.complete Sequence
788 bp assembled on 2006-11-01
GenBank Submission: FJ637483
> BS13575.complete
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGCTCTCACGGAGGTGCTG
CGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGAGCATCAG
TCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGGCTCTCGTTGGCA
TTCCCGACTTTCCAATGCTCCGCTCTGAGGATGTGGCCGATGCCATTAGC
TACTGCATCCAGACCCCGCCAAATGTCCAGATTCACGAGCTGACCATCAA
GCCTGTCGGCGAAACCCTCTAGAAGCTTTCTAGACCAT
BS13575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 756 | CG9360-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
CG3301-RC | 753 | CG3301-PC | 16..275 | 32..291 | 265 | 73.5 | Plus |
CG3301-RB | 753 | CG3301-PB | 16..275 | 32..291 | 265 | 73.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 1035 | CG9360-RA | 110..866 | 17..773 | 3785 | 100 | Plus |
CG3301-RC | 814 | CG3301-RC | 38..313 | 16..291 | 270 | 73.2 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..313 | 16..291 | 270 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11763906..11764481 | 592..17 | 2880 | 100 | Minus |
X | 23542271 | X | 11763643..11763824 | 773..592 | 910 | 100 | Minus |
3R | 32079331 | 3R | 21275937..21276212 | 291..16 | 270 | 73.2 | Minus |
X | 23542271 | X | 8974162..8974227 | 82..17 | 210 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:56:32 has no hits.
BS13575.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:07 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:58:50 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 108..871 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:09 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..865 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:07 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 108..871 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:21 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..865 | 17..772 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:21 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763644..11763823 | 593..772 | 100 | <- | Minus |
X | 11763906..11764481 | 17..592 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:09 Download gff for
BS13575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657677..11657856 | 593..772 | 100 | <- | Minus |
arm_X | 11657939..11658514 | 17..592 | 100 | | Minus |
BS13575.pep Sequence
Translation from 16 to 771
> BS13575.pep
MDRWLNRVAVVTGASSGIGAACCKDLVSKGLVVVGLARREDRLQELKASL
PADQASRFHGRKCDVSQEQEVIDAFAWIDATLGGADVLVNNAGIVRLGVG
ITHEGNGADLRAILDTNVLGVSWCTREAFKSLKRRNVNDGHILIVNSVAG
HRVINNPGITMGMYSPSKYAVTALTEVLRQEFHNNKTQTKITSISPGAVD
TEIIDKEALVGIPDFPMLRSEDVADAISYCIQTPPNVQIHELTIKPVGET
L*
BS13575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-PA | 251 | CG9360-PA | 1..251 | 1..251 | 1286 | 100 | Plus |
CG3301-PC | 250 | CG3301-PC | 1..248 | 1..249 | 888 | 69.5 | Plus |
CG3301-PB | 250 | CG3301-PB | 1..248 | 1..249 | 888 | 69.5 | Plus |
CG3301-PA | 250 | CG3301-PA | 1..248 | 1..249 | 888 | 69.5 | Plus |
CG9150-PB | 251 | CG9150-PB | 1..249 | 1..249 | 645 | 49.8 | Plus |