Clone Sequence Records
BS13577.5prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS13577.5prime
GAAGTTATCAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGC
TGGGATTGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCC
GCCAAGCGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCA
TGGTTTCGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACG
AAAGCGATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGG
AACTATGGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCG
TGGCGGCATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAA
GGGAGTCGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGT
CATTGGGCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAA
TCTTAAGGTTATCTGTGGGATCTAGAAGCTTTCTAGACC
BS13577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-PA | 459 | CG16756-RA | 1..459 | 17..475 | 2270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 521 | CG16756-RA | 12..471 | 17..476 | 2285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5427528..5427691 | 17..180 | 820 | 100 | Plus |
X | 23542271 | X | 5427806..5427959 | 180..333 | 755 | 99.4 | Plus |
X | 23542271 | X | 5428019..5428167 | 328..476 | 730 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:07:48 has no hits.
BS13577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:07 Download gff for
BS13577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-PA | 1..459 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:32 Download gff for
BS13577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..471 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:06 Download gff for
BS13577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..471 | 9..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:06 Download gff for
BS13577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5427518..5427690 | 9..179 | 98 | -> | Plus |
X | 5427806..5427955 | 180..329 | 100 | -> | Plus |
X | 5428021..5428167 | 330..476 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:32 Download gff for
BS13577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5321551..5321723 | 9..179 | 98 | -> | Plus |
arm_X | 5321839..5321988 | 180..329 | 100 | -> | Plus |
arm_X | 5322054..5322200 | 330..476 | 99 | | Plus |
BS13577.complete Sequence
491 bp assembled on 2006-11-01
GenBank Submission: FJ637484
> BS13577.complete
GAAGTTATCAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGC
TGGGATTGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCC
GCCAAGCGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCA
TGGTTTCGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACG
AAAGCGATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGG
AACTATGGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCG
TGGCGGCATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAA
GGGAGTCGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGT
CATTGGGCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAA
TCTTAAGGTTATCTGTGGGATCTAGAAGCTTTCTAGACCAT
BS13577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 459 | CG16756-PA | 1..459 | 17..475 | 2280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 521 | CG16756-RA | 12..471 | 17..476 | 2285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5427528..5427691 | 17..180 | 820 | 100 | Plus |
X | 23542271 | X | 5427806..5427959 | 180..333 | 755 | 99.4 | Plus |
X | 23542271 | X | 5428019..5428167 | 328..476 | 730 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:46 has no hits.
BS13577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:20 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 1..459 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:10 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..471 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:32 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 12..470 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:20 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..471 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:14 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 12..470 | 17..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:14 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5428021..5428166 | 330..475 | 99 | | Plus |
X | 5427528..5427690 | 17..179 | 100 | -> | Plus |
X | 5427806..5427955 | 180..329 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:32 Download gff for
BS13577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5321561..5321723 | 17..179 | 100 | -> | Plus |
arm_X | 5321839..5321988 | 180..329 | 100 | -> | Plus |
arm_X | 5322054..5322199 | 330..475 | 99 | | Plus |
BS13577.pep Sequence
Translation from 16 to 474
> BS13577.pep
MRAAPFGSWYWLGLGLGLLLAIECGVVSAKRFLRCELARKLLDQHGFERS
LLSNWICLLEHESDLDTGRITTNANGSRNYGLFQINGRFCQEGRRGGICN
AKCEDFLDENLRESVTCAKRIQTSDGFRHWAGWQRYCRNAQNLPNLKVIC
GI*
BS13577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-PA | 152 | CG16756-PA | 1..152 | 1..152 | 834 | 100 | Plus |
CG16799-PB | 179 | CG16799-PB | 27..164 | 18..152 | 423 | 50 | Plus |
CG16799-PA | 179 | CG16799-PA | 27..164 | 18..152 | 423 | 50 | Plus |
CG11159-PA | 146 | CG11159-PA | 6..143 | 5..146 | 291 | 44.8 | Plus |
CG7798-PA | 148 | CG7798-PA | 6..136 | 18..146 | 203 | 35.1 | Plus |