Clone Sequence Records
BS13585.3prime Sequence
576 bp (576 high quality bases) assembled on 2006-10-13
> BS13585.3prime
ATGGTCTAGAAAGCTTCTACTCACTGGAGCCACTGGCTTCAGCTTGGACG
GTTGGGCTTGGCTGTGCGGCTTCATCGGTGGTCACCACCGAGTTCCCCTC
AATCTGGCAGGCCTCCACAGCGGCAGTTATCTCCGCAACGTCCGCCGAAC
TTTCGTTAGGTTTCTCCAGCTCAGTCTCGCCGTTCTCCTGCTGCTGCTGC
TGCTGCTGCTGCTCCGCCGCCTCAGTGGACTCGGCCACGGTCTGTGGCGC
CTCCGTTGCGACCACTACTTCACTTGAAGCCACTGGCTGATGACCCTGGA
GCACGTCGGGATTGATGCCGTTGATGATGGCGCGCAGACGCTGGATCTCC
TCGTTGGCCAGCTGCAGATCCTGCTGCAGGCGCTCGTACTTGTCGTGCTG
GTGGCGCACCACGCCGATGTGGTTACGGATGTAGTCCATGGGATTCTCGG
GCCGCTCCTTGATCACGCGTATGAAGAGCTTGGTCAGCGAGTCCAGGACG
CTGCCGCGCTCTAGATAGCGCCGGATCTCGTCGCGCTTCGGGTCAATGGG
CTTAAAGGACATGTCGACTGATAACT
BS13585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-PA | 546 | CG17202-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-RA | 777 | CG17202-RA | 92..638 | 562..16 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12422931..12423467 | 552..16 | 2685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:20:22 has no hits.
BS13585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:10 Download gff for
BS13585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:22 Download gff for
BS13585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..641 | 12..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:45 Download gff for
BS13585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..641 | 12..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:45 Download gff for
BS13585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12422931..12423470 | 12..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:22 Download gff for
BS13585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8248653..8249192 | 12..552 | 99 | | Minus |
BS13585.5prime Sequence
576 bp (517 high quality bases) assembled on 2006-10-13
> BS13585.5prime
GAAGTTATCAGTCGACATGTCCTTTAAGCCCATTGACCCGAAGCGCGACG
AGATCCGGCGCTATCTAGAGCGCGGCAGCGTCCTGGACTCGCTGACCAAG
CTCTTCATACGCGTGATCAAGGAGCGGCCCGAGAATCCCATGGACTACAT
CCGTAACCACATCGGCGTGGTGCGCCACCAGCACGACAAGTACGAGCGCC
TGCAGCAGGATCTGCAGCTGGCCAACGAGGAGATCCAGCGTCTGCGCGCC
ATCATCAACGGCATCAATCCCGACGTGCTCCAGGGTCATCAGCCAGTGGC
TTCAAGTGAAGTAGTGGTCGCAACGGAGGCGCCACAGACCGTGGCCGAGT
CCACTGAGGCGGCGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAACGGC
GAGACTGAGCTGGAGAAACCTAACGAAAGTTCGGCGGACGTTGCGGAGAT
AACTGCCGCTGTGGAGGCCTGCCAGATTGAGGGGAACTCGGTGGTGACCA
CCGATGAAGCCGCACAGCCAAGCCCAACCGTCCAAGCTGAAGCCAGTGGC
TCCAGTGAGTAGAAGCTTTCTAGACC
BS13585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-PA | 546 | CG17202-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-RA | 777 | CG17202-RA | 92..638 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12422931..12423467 | 27..563 | 2685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:27:39 has no hits.
BS13585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:10 Download gff for
BS13585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:49 Download gff for
BS13585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..641 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:37 Download gff for
BS13585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..641 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:37 Download gff for
BS13585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12422931..12423470 | 27..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:49 Download gff for
BS13585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8248653..8249192 | 27..567 | 99 | | Plus |
BS13585.complete Sequence
578 bp assembled on 2006-11-01
GenBank Submission: FJ637485
> BS13585.complete
GAAGTTATCAGTCGACATGTCCTTTAAGCCCATTGACCCGAAGCGCGACG
AGATCCGGCGCTATCTAGAGCGCGGCAGCGTCCTGGACTCGCTGACCAAG
CTCTTCATACGCGTGATCAAGGAGCGGCCCGAGAATCCCATGGACTACAT
CCGTAACCACATCGGCGTGGTGCGCCACCAGCACGACAAGTACGAGCGCC
TGCAGCAGGATCTGCAGCTGGCCAACGAGGAGATCCAGCGTCTGCGCGCC
ATCATCAACGGCATCAATCCCGACGTGCTCCAGGGTCATCAGCCAGTGGC
TTCAAGTGAAGTAGTGGTCGCAACGGAGGCGCCACAGACCGTGGCCGAGT
CCACTGAGGCGGCGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAACGGC
GAGACTGAGCTGGAGAAACCTAACGAAAGTTCGGCGGACGTTGCGGAGAT
AACTGCCGCTGTGGAGGCCTGCCAGATTGAGGGGAACTCGGTGGTGACCA
CCGATGAAGCCGCACAGCCAAGCCCAACCGTCCAAGCTGAAGCCAGTGGC
TCCAGTGAGTAGAAGCTTTCTAGACCAT
BS13585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-RA | 546 | CG17202-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-RA | 777 | CG17202-RA | 92..638 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12422931..12423467 | 27..563 | 2685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:22:15 has no hits.
BS13585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:39 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:42 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..641 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:10 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..637 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:39 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..641 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:52 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17202-RA | 92..637 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:52 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12422931..12423466 | 27..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:10 Download gff for
BS13585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8248653..8249188 | 27..562 | 100 | | Plus |
BS13585.pep Sequence
Translation from 16 to 561
> BS13585.pep
MSFKPIDPKRDEIRRYLERGSVLDSLTKLFIRVIKERPENPMDYIRNHIG
VVRHQHDKYERLQQDLQLANEEIQRLRAIINGINPDVLQGHQPVASSEVV
VATEAPQTVAESTEAAEQQQQQQQQENGETELEKPNESSADVAEITAAVE
ACQIEGNSVVTTDEAAQPSPTVQAEASGSSE*
BS13585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17202-PA | 181 | CG17202-PA | 1..181 | 1..181 | 906 | 100 | Plus |
