Clone BS13587 Report

Search the DGRC for BS13587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG12025-RA
Protein status:BS13587.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13587.3prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13587.3prime
ATGGTCTAGAAAGCTTTTATGTGAACAGCGGCAGGTGATAGAAGTCGAAC
CCTCGATATCCTTTGGCTGCCAGCCAGATGTACACGACGTGATAGGCCCC
GGGTATGAAGCAGATGAGTCCCGCTACGAAGAACACGACTCCCTGCGACG
TGTTCTGCGGATCCGCGATGGCAAAGGTGCCCATCACAAAGAGGCCCGTG
CCCACGACCAGGAGCGTAAAGGCGGCCAGCACTGTGCGCCAGTTCTCACG
CACCTTGGGATGCCGCCAGCAGTATGTGTTGGTCTCCTCCGTGGGCAGGT
TGCCGTACTCCTGGATGAGCGAGTCGCTGTCCCGGGACGTTGTGTCCTCG
GCATACTTGTTGTAGCCCTTGGGGTCCTGAATCCGGATGGAGACGTCTTC
GGTGGAGCGACCTTGCTTGCCTCTCATGGGCGTGGATATCACGGTGGAGC
CATAGACGCGTATCGCCTCGTCGGTCTCCTCCTCGAAGGCGTCGTGAATG
GAGAAGCCCCTGGCCCCGTTGTTGTACATGTCGACTGATAACT

BS13587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-PA 513 CG12025-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 2839 CG12025-RC 328..840 529..17 2565 100 Minus
CG12025-RB 1992 CG12025-RB 328..840 529..17 2565 100 Minus
CG12025-RA 1211 CG12025-RA 328..840 529..17 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1867135..1867492 374..17 1775 99.7 Minus
3L 28110227 3L 1865757..1865918 529..368 810 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:45:15 has no hits.

BS13587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:11 Download gff for BS13587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:52 Download gff for BS13587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 13..537 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:47 Download gff for BS13587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 13..537 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:47 Download gff for BS13587.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1865749..1865917 369..537 97 -> Minus
3L 1867141..1867494 13..368 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:52 Download gff for BS13587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1865749..1865917 369..537 97 -> Minus
arm_3L 1867141..1867494 13..368 99   Minus

BS13587.5prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13587.5prime
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACATAAAAGCTTTCTAGACC

BS13587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-PA 513 CG12025-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 2839 CG12025-RC 328..840 17..529 2565 100 Plus
CG12025-RB 1992 CG12025-RB 328..840 17..529 2565 100 Plus
CG12025-RA 1211 CG12025-RA 328..840 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1867135..1867492 172..529 1775 99.7 Plus
3L 28110227 3L 1865757..1865918 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:20:33 has no hits.

BS13587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:11 Download gff for BS13587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:25 Download gff for BS13587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 9..533 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:47 Download gff for BS13587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 9..533 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:47 Download gff for BS13587.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1865749..1865917 9..177 97 -> Plus
3L 1867141..1867494 178..533 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:25 Download gff for BS13587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1865749..1865917 9..177 97 -> Plus
arm_3L 1867141..1867494 178..533 99   Plus

BS13587.complete Sequence

545 bp assembled on 2006-11-01

GenBank Submission: FJ637486

> BS13587.complete
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACATAAAAGCTTTCTAGACCAT

BS13587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 513 CG12025-PC 1..513 17..529 2565 100 Plus
CG12025-RB 513 CG12025-PB 1..513 17..529 2565 100 Plus
CG12025-RA 513 CG12025-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 2839 CG12025-RC 328..840 17..529 2565 100 Plus
CG12025-RB 1992 CG12025-RB 328..840 17..529 2565 100 Plus
CG12025-RA 1211 CG12025-RA 328..840 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1867135..1867492 172..529 1775 99.7 Plus
3L 28110227 3L 1865757..1865918 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:32:56 has no hits.

BS13587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:07 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:09 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 319..841 9..533 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:05 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 328..838 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:07 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 319..841 9..533 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:31 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 328..838 17..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:31 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1865757..1865917 17..177 100 -> Plus
3L 1867141..1867490 178..527 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:05 Download gff for BS13587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1865757..1865917 17..177 100 -> Plus
arm_3L 1867141..1867490 178..527 100   Plus

BS13587.pep Sequence

Translation from 16 to 528

> BS13587.pep
MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRI
QDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTYCWRHPKVRENWRTV
LAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVY
IWLAAKGYRGFDFYHLPLFT*

BS13587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-PC 170 CG12025-PC 1..170 1..170 910 100 Plus
CG12025-PB 170 CG12025-PB 1..170 1..170 910 100 Plus
CG12025-PA 170 CG12025-PA 1..170 1..170 910 100 Plus