Clone Sequence Records
BS13587.3prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13587.3prime
ATGGTCTAGAAAGCTTTTATGTGAACAGCGGCAGGTGATAGAAGTCGAAC
CCTCGATATCCTTTGGCTGCCAGCCAGATGTACACGACGTGATAGGCCCC
GGGTATGAAGCAGATGAGTCCCGCTACGAAGAACACGACTCCCTGCGACG
TGTTCTGCGGATCCGCGATGGCAAAGGTGCCCATCACAAAGAGGCCCGTG
CCCACGACCAGGAGCGTAAAGGCGGCCAGCACTGTGCGCCAGTTCTCACG
CACCTTGGGATGCCGCCAGCAGTATGTGTTGGTCTCCTCCGTGGGCAGGT
TGCCGTACTCCTGGATGAGCGAGTCGCTGTCCCGGGACGTTGTGTCCTCG
GCATACTTGTTGTAGCCCTTGGGGTCCTGAATCCGGATGGAGACGTCTTC
GGTGGAGCGACCTTGCTTGCCTCTCATGGGCGTGGATATCACGGTGGAGC
CATAGACGCGTATCGCCTCGTCGGTCTCCTCCTCGAAGGCGTCGTGAATG
GAGAAGCCCCTGGCCCCGTTGTTGTACATGTCGACTGATAACT
BS13587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-PA | 513 | CG12025-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 2839 | CG12025-RC | 328..840 | 529..17 | 2565 | 100 | Minus |
CG12025-RB | 1992 | CG12025-RB | 328..840 | 529..17 | 2565 | 100 | Minus |
CG12025-RA | 1211 | CG12025-RA | 328..840 | 529..17 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1867135..1867492 | 374..17 | 1775 | 99.7 | Minus |
3L | 28110227 | 3L | 1865757..1865918 | 529..368 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:45:15 has no hits.
BS13587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:11 Download gff for
BS13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-PA | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:52 Download gff for
BS13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 13..537 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:47 Download gff for
BS13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 13..537 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:47 Download gff for
BS13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1865749..1865917 | 369..537 | 97 | -> | Minus |
3L | 1867141..1867494 | 13..368 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:52 Download gff for
BS13587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1865749..1865917 | 369..537 | 97 | -> | Minus |
arm_3L | 1867141..1867494 | 13..368 | 99 | | Minus |
BS13587.5prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13587.5prime
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACATAAAAGCTTTCTAGACC
BS13587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-PA | 513 | CG12025-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 2839 | CG12025-RC | 328..840 | 17..529 | 2565 | 100 | Plus |
CG12025-RB | 1992 | CG12025-RB | 328..840 | 17..529 | 2565 | 100 | Plus |
CG12025-RA | 1211 | CG12025-RA | 328..840 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1867135..1867492 | 172..529 | 1775 | 99.7 | Plus |
3L | 28110227 | 3L | 1865757..1865918 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:20:33 has no hits.
BS13587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:11 Download gff for
BS13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-PA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:25 Download gff for
BS13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 9..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:47 Download gff for
BS13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 9..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:47 Download gff for
BS13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1865749..1865917 | 9..177 | 97 | -> | Plus |
3L | 1867141..1867494 | 178..533 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:25 Download gff for
BS13587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1865749..1865917 | 9..177 | 97 | -> | Plus |
arm_3L | 1867141..1867494 | 178..533 | 99 | | Plus |
BS13587.complete Sequence
545 bp assembled on 2006-11-01
GenBank Submission: FJ637486
> BS13587.complete
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACATAAAAGCTTTCTAGACCAT
BS13587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 513 | CG12025-PC | 1..513 | 17..529 | 2565 | 100 | Plus |
CG12025-RB | 513 | CG12025-PB | 1..513 | 17..529 | 2565 | 100 | Plus |
CG12025-RA | 513 | CG12025-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 2839 | CG12025-RC | 328..840 | 17..529 | 2565 | 100 | Plus |
CG12025-RB | 1992 | CG12025-RB | 328..840 | 17..529 | 2565 | 100 | Plus |
CG12025-RA | 1211 | CG12025-RA | 328..840 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1867135..1867492 | 172..529 | 1775 | 99.7 | Plus |
3L | 28110227 | 3L | 1865757..1865918 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:32:56 has no hits.
BS13587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:07 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:09 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 319..841 | 9..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:05 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 328..838 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:07 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 319..841 | 9..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:31 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 328..838 | 17..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:31 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1865757..1865917 | 17..177 | 100 | -> | Plus |
3L | 1867141..1867490 | 178..527 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:05 Download gff for
BS13587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1865757..1865917 | 17..177 | 100 | -> | Plus |
arm_3L | 1867141..1867490 | 178..527 | 100 | | Plus |
BS13587.pep Sequence
Translation from 16 to 528
> BS13587.pep
MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRI
QDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTYCWRHPKVRENWRTV
LAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVY
IWLAAKGYRGFDFYHLPLFT*
BS13587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-PC | 170 | CG12025-PC | 1..170 | 1..170 | 910 | 100 | Plus |
CG12025-PB | 170 | CG12025-PB | 1..170 | 1..170 | 910 | 100 | Plus |
CG12025-PA | 170 | CG12025-PA | 1..170 | 1..170 | 910 | 100 | Plus |