Clone BS13588 Report

Search the DGRC for BS13588

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:135
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG11158-RA
Protein status:BS13588.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13588.3prime Sequence

678 bp (597 high quality bases) assembled on 2006-10-13

> BS13588.3prime
ATGGTCTAGAAAGCTTCTAAGCGCATAGTTGTGCGATATCGGCATTGGGA
AGGAATCCCGTCCAGGCGATGATCGTGCGGAAGGTCGCTCCACTAGTGAG
GCGCCTAATGATGTGCACATTTATCTTCTTGCCATGAATGTCGTCCACTT
TCCGGCCGCGCAGGTGATCCAGCACCATCTGGCCACGGGTGTGGATGCCA
CTCAGCTCCACGGTGGCGTAGTACTGCCGCTGTTCGGCGATCATCGCATC
CGGGAAGAGATAGGCGGCGGTGAGTAGGGAATCACAACTGATCCACTTCA
CGAATCCTCGCGGCTCCAGCATGGAGCGTTCCACGCGTGTGAGTAGCTCT
ATAAAGGGATGATCAACCGCTCCGAGGACATTCAGTCGCCAGTCGAGGGT
GGTGTCGAACTCTCCATCGATGCAGGGCTCCCAGGGCAGGATGATCGCCG
GTTCCAGCAGACGCTCCAGGGTAATGTGCGCCGCCTCGGGATCCATCATG
AAATTGAATTCGGCACTTTTCGTGACATTACCCTTGCCGAATATGTTGCC
ACCCATTATATAGACTCGACCAATGTTCGTCAGAAATGAGTTTCCATACA
AATTGATGCAGTTGGCAAAGTTGGTAAGTGGTCCGCACAGCAAAAAGTCC
ACTTGGCCGGGATTAGCTCTGGCCAGGC

BS13588.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 1035 CG11158-RA 374..1035 678..17 3285 99.8 Minus
CG5418-PA 1068 CG5418-RA 872..908 195..159 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1608 CG11158-RA 398..1059 678..17 3295 99.8 Minus
CG5418-RA 1196 CG5418-RA 424..1028 655..48 390 71.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683406..13684067 678..17 3295 99.8 Minus
2L 23513712 2L 12452170..12452717 108..655 355 71 Plus
Blast to na_te.dros performed on 2015-02-12 11:05:14 has no hits.

BS13588.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:12 Download gff for BS13588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-PA 374..1035 17..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:57 Download gff for BS13588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 398..1065 11..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:50 Download gff for BS13588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 398..1065 11..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:50 Download gff for BS13588.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13683406..13684073 11..678 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:57 Download gff for BS13588.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13577439..13578106 11..678 99   Minus

BS13588.5prime Sequence

662 bp (632 high quality bases) assembled on 2006-10-13

> BS13588.5prime
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCG

BS13588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 1035 CG11158-RA 1..646 17..662 3230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1608 CG11158-RA 20..670 12..662 3255 100 Plus
CG5418-RA 1196 CG5418-RA 352..664 341..653 285 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683246..13683678 230..662 2165 100 Plus
X 23542271 X 13682971..13683190 12..231 1100 100 Plus
2L 23513712 2L 12452477..12452789 653..341 275 72.5 Minus
Blast to na_te.dros performed on 2015-02-03 06:35:18 has no hits.

BS13588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:12 Download gff for BS13588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-PA 1..646 17..662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:17 Download gff for BS13588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 11..670 1..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:42 Download gff for BS13588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 11..670 1..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:42 Download gff for BS13588.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13682962..13683188 1..229 98 -> Plus
X 13683246..13683678 230..662 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:17 Download gff for BS13588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13576995..13577221 1..229 98 -> Plus
arm_X 13577279..13577711 230..662 100   Plus

BS13588.complete Sequence

1067 bp assembled on 2006-11-01

GenBank Submission: FJ638855

> BS13588.complete
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGAGCG
GTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCATGCT
GGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCACCG
CCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTACTAC
GCCACCGTGGAGCTGAGTGGCATCCACACCCGTGGCCAGATGGTGCTGGA
TCACCTGCGCGGCCGGAAAGTGGACGACATTCATGGCAAGAAGATAAATG
TGCACATCATTAGGCGCCTCACTAGTGGAGCGACCTTCCGCACGATCATC
GCCTGGACGGGATTCCTTCCCAATGCCGATATCGCACAACTATGCGCTTA
GAAGCTTTCTAGACCAT

BS13588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1035 CG11158-PA 1..1035 17..1051 5175 100 Plus
CG5418-RA 1068 CG5418-PA 340..959 341..960 385 70.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1608 CG11158-RA 20..1059 12..1051 5200 100 Plus
CG5418-RA 1196 CG5418-RA 352..971 341..960 385 70.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683246..13684067 230..1051 4110 100 Plus
X 23542271 X 13682971..13683190 12..231 1100 100 Plus
2L 23513712 2L 12452170..12452789 960..341 385 70.8 Minus
Blast to na_te.dros performed on 2014-11-27 01:02:10 has no hits.

BS13588.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:50 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:21 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 56..1110 1..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:52 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 25..1059 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:50 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 56..1110 1..1057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:50 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 25..1059 17..1051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:50 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
X 13682976..13683188 17..229 100 -> Plus
X 13683246..13684067 230..1051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:52 Download gff for BS13588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13577009..13577221 17..229 100 -> Plus
arm_X 13577279..13578100 230..1051 100   Plus

BS13588.pep Sequence

Translation from 16 to 1050

> BS13588.pep
MDKKHRLVVYDCDIGTDDAWGLAMLLRAEELTLREGRTCKVLAITTVHGN
TDADNGTLNALRVLHTLNRRDVPVFRGCYESIVPRTWEYTNCFHGQDGLN
DVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCIN
LYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERLLE
PAIILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGF
VKWISCDSLLTAAYLFPDAMIAEQRQYYATVELSGIHTRGQMVLDHLRGR
KVDDIHGKKINVHIIRRLTSGATFRTIIAWTGFLPNADIAQLCA*

BS13588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 344 CG11158-PA 1..344 1..344 1838 100 Plus
CG5418-PA 355 CG5418-PA 7..347 3..343 1220 67.5 Plus
CG12177-PC 362 CG12177-PC 25..325 6..301 583 41.2 Plus
CG12177-PB 362 CG12177-PB 25..325 6..301 583 41.2 Plus
CG12177-PA 362 CG12177-PA 25..325 6..301 583 41.2 Plus