Clone Sequence Records
BS13588.3prime Sequence
678 bp (597 high quality bases) assembled on 2006-10-13
> BS13588.3prime
ATGGTCTAGAAAGCTTCTAAGCGCATAGTTGTGCGATATCGGCATTGGGA
AGGAATCCCGTCCAGGCGATGATCGTGCGGAAGGTCGCTCCACTAGTGAG
GCGCCTAATGATGTGCACATTTATCTTCTTGCCATGAATGTCGTCCACTT
TCCGGCCGCGCAGGTGATCCAGCACCATCTGGCCACGGGTGTGGATGCCA
CTCAGCTCCACGGTGGCGTAGTACTGCCGCTGTTCGGCGATCATCGCATC
CGGGAAGAGATAGGCGGCGGTGAGTAGGGAATCACAACTGATCCACTTCA
CGAATCCTCGCGGCTCCAGCATGGAGCGTTCCACGCGTGTGAGTAGCTCT
ATAAAGGGATGATCAACCGCTCCGAGGACATTCAGTCGCCAGTCGAGGGT
GGTGTCGAACTCTCCATCGATGCAGGGCTCCCAGGGCAGGATGATCGCCG
GTTCCAGCAGACGCTCCAGGGTAATGTGCGCCGCCTCGGGATCCATCATG
AAATTGAATTCGGCACTTTTCGTGACATTACCCTTGCCGAATATGTTGCC
ACCCATTATATAGACTCGACCAATGTTCGTCAGAAATGAGTTTCCATACA
AATTGATGCAGTTGGCAAAGTTGGTAAGTGGTCCGCACAGCAAAAAGTCC
ACTTGGCCGGGATTAGCTCTGGCCAGGC
BS13588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-PA | 1035 | CG11158-RA | 374..1035 | 678..17 | 3285 | 99.8 | Minus |
CG5418-PA | 1068 | CG5418-RA | 872..908 | 195..159 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1608 | CG11158-RA | 398..1059 | 678..17 | 3295 | 99.8 | Minus |
CG5418-RA | 1196 | CG5418-RA | 424..1028 | 655..48 | 390 | 71.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13683406..13684067 | 678..17 | 3295 | 99.8 | Minus |
2L | 23513712 | 2L | 12452170..12452717 | 108..655 | 355 | 71 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:14 has no hits.
BS13588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:12 Download gff for
BS13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-PA | 374..1035 | 17..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:57 Download gff for
BS13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 398..1065 | 11..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:50 Download gff for
BS13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 398..1065 | 11..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:50 Download gff for
BS13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13683406..13684073 | 11..678 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:57 Download gff for
BS13588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13577439..13578106 | 11..678 | 99 | | Minus |
BS13588.5prime Sequence
662 bp (632 high quality bases) assembled on 2006-10-13
> BS13588.5prime
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCG
BS13588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-PA | 1035 | CG11158-RA | 1..646 | 17..662 | 3230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1608 | CG11158-RA | 20..670 | 12..662 | 3255 | 100 | Plus |
CG5418-RA | 1196 | CG5418-RA | 352..664 | 341..653 | 285 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13683246..13683678 | 230..662 | 2165 | 100 | Plus |
X | 23542271 | X | 13682971..13683190 | 12..231 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 12452477..12452789 | 653..341 | 275 | 72.5 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:35:18 has no hits.
BS13588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:12 Download gff for
BS13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-PA | 1..646 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:17 Download gff for
BS13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 11..670 | 1..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:42 Download gff for
BS13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 11..670 | 1..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:42 Download gff for
BS13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13682962..13683188 | 1..229 | 98 | -> | Plus |
X | 13683246..13683678 | 230..662 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:17 Download gff for
BS13588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13576995..13577221 | 1..229 | 98 | -> | Plus |
arm_X | 13577279..13577711 | 230..662 | 100 | | Plus |
BS13588.complete Sequence
1067 bp assembled on 2006-11-01
GenBank Submission: FJ638855
> BS13588.complete
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGAGCG
GTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCATGCT
GGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCACCG
CCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTACTAC
GCCACCGTGGAGCTGAGTGGCATCCACACCCGTGGCCAGATGGTGCTGGA
TCACCTGCGCGGCCGGAAAGTGGACGACATTCATGGCAAGAAGATAAATG
TGCACATCATTAGGCGCCTCACTAGTGGAGCGACCTTCCGCACGATCATC
GCCTGGACGGGATTCCTTCCCAATGCCGATATCGCACAACTATGCGCTTA
GAAGCTTTCTAGACCAT
BS13588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1035 | CG11158-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
CG5418-RA | 1068 | CG5418-PA | 340..959 | 341..960 | 385 | 70.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1608 | CG11158-RA | 20..1059 | 12..1051 | 5200 | 100 | Plus |
CG5418-RA | 1196 | CG5418-RA | 352..971 | 341..960 | 385 | 70.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13683246..13684067 | 230..1051 | 4110 | 100 | Plus |
X | 23542271 | X | 13682971..13683190 | 12..231 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 12452170..12452789 | 960..341 | 385 | 70.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:02:10 has no hits.
BS13588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:50 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 1..1035 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:21 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 56..1110 | 1..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:52 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 25..1059 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:50 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 56..1110 | 1..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:50 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 25..1059 | 17..1051 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:50 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13682976..13683188 | 17..229 | 100 | -> | Plus |
X | 13683246..13684067 | 230..1051 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:52 Download gff for
BS13588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13577009..13577221 | 17..229 | 100 | -> | Plus |
arm_X | 13577279..13578100 | 230..1051 | 100 | | Plus |
BS13588.pep Sequence
Translation from 16 to 1050
> BS13588.pep
MDKKHRLVVYDCDIGTDDAWGLAMLLRAEELTLREGRTCKVLAITTVHGN
TDADNGTLNALRVLHTLNRRDVPVFRGCYESIVPRTWEYTNCFHGQDGLN
DVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCIN
LYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERLLE
PAIILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGF
VKWISCDSLLTAAYLFPDAMIAEQRQYYATVELSGIHTRGQMVLDHLRGR
KVDDIHGKKINVHIIRRLTSGATFRTIIAWTGFLPNADIAQLCA*
BS13588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-PA | 344 | CG11158-PA | 1..344 | 1..344 | 1838 | 100 | Plus |
CG5418-PA | 355 | CG5418-PA | 7..347 | 3..343 | 1220 | 67.5 | Plus |
CG12177-PC | 362 | CG12177-PC | 25..325 | 6..301 | 583 | 41.2 | Plus |
CG12177-PB | 362 | CG12177-PB | 25..325 | 6..301 | 583 | 41.2 | Plus |
CG12177-PA | 362 | CG12177-PA | 25..325 | 6..301 | 583 | 41.2 | Plus |