Clone Sequence Records
BS13607.3prime Sequence
651 bp (627 high quality bases) assembled on 2006-10-13
> BS13607.3prime
ATGGTCTAGAAAGCTTTTAGTACTCGGAAACATAGATAATGGGAGTGGTC
TCGATTAGCAGAATGTCCTGCTCCACCTGGCGAAGATCGGACTCCAGCTT
GCTTTTGCGCTGCCGCTTGGCGATGCTGTCGATAAGGAGCGACATCGACT
GATACTGCTTGGTCATCTCGGTCAGGCTCAGTCGCAGTCCCTCGAGGATC
TCATTTCGCTCGGCCTGCTCCATCACCCGCATACCCGGCATTGGCGGCGG
ACCACTTGATTGGACGGATGCCCTGGTGAAACCCTTGATACCGCGGCACA
GCTCCAGCAAACGTGCCTGTTCCTTGGCACACACCGCATTCATGTCGGCC
AACATCCTCTTGGTTTTCTTGAGGTAAACAGGCACCTTGCCGAAATCCTT
GCGGCAGATAAACTGCGGTACCAATCCGGAATTGAGTAGATCGTGACGAG
CTCCCACGGGAGTGTCTACATAACGAGGTGGCGGGGGACAGGGAACCGTT
TGTCCGGCACATATCTTGTTGCGTTTGATGAAGTTAGGTACCATTGCCGG
CTTTTTGCCGCCACTGCCCGGTGGTGGTAGTGGGGGCATTGGCGGCATCT
TGGGACACTTGTGGGTGTTCTCTCGCCGCCATTTGATGCCCTGGCTCTTG
C
BS13607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-PA | 924 | CG16984-RA | 290..924 | 651..17 | 3175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12182-RC | 3493 | CG12182-RC | 2486..3120 | 17..651 | 3175 | 100 | Plus |
CG16984-RA | 1162 | CG16984-RA | 379..1013 | 651..17 | 3175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2596215..2596849 | 651..17 | 3175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:11 has no hits.
BS13607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:17 Download gff for
BS13607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-PA | 290..924 | 17..651 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:49 Download gff for
BS13607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 379..1013 | 17..651 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:32 Download gff for
BS13607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 379..1013 | 17..651 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:32 Download gff for
BS13607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2596215..2596849 | 17..651 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:49 Download gff for
BS13607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2596215..2596849 | 17..651 | 100 | | Minus |
BS13607.5prime Sequence
594 bp (493 high quality bases) assembled on 2006-10-13
> BS13607.5prime
GAAGTTATCAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGA
ATATTCTCGAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAA
TCAATTTTTGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGC
CAAGAGACTTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTA
TCCTCCAGAACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCC
CACCGCACCATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTA
TTTGCGCAAGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGT
GTCCCAAGATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGC
AAAAAGCCGGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGC
CGGACAAACGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCG
TGGGAGCTCGTCACGATCTACTNCATTCCGGATTGGTACCGCAGTTTATC
TGCCGCANGGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAAC
BS13607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-PA | 924 | CG16984-RA | 1..578 | 17..594 | 2827 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 1162 | CG16984-RA | 90..667 | 17..594 | 2853 | 99.5 | Plus |
CG12182-RC | 3493 | CG12182-RC | 2832..3303 | 594..123 | 2323 | 99.4 | Minus |
CG12182-RC | 3493 | CG12182-RC | 3360..3465 | 122..17 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2596032..2596503 | 123..594 | 2323 | 99.4 | Plus |
3L | 28110227 | 3L | 2595870..2595975 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:28:46 has no hits.
BS13607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:18 Download gff for
BS13607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-PA | 1..578 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:10 Download gff for
BS13607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..667 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:34 Download gff for
BS13607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..667 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:34 Download gff for
BS13607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
3L | 2596032..2596503 | 123..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:10 Download gff for
BS13607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
arm_3L | 2596032..2596503 | 123..594 | 99 | | Plus |
BS13607.complete Sequence
956 bp assembled on 2006-11-01
GenBank Submission: FJ637487
> BS13607.complete
GAAGTTATCAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGA
ATATTCTCGAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAA
TCAATTTTTGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGC
CAAGAGACTTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTA
TCCTCCAGAACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCC
CACCGCACCATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTA
TTTGCGCAAGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGT
GTCCCAAGATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGC
AAAAAGCCGGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGC
CGGACAAACGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCG
TGGGAGCTCGTCACGATCTACTCAATTCCGGATTGGTACCGCAGTTTATC
TGCCGCAAGGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAACCAAGAG
GATGTTGGCCGACATGAATGCGGTGTGTGCCAAGGAACAGGCACGTTTGC
TGGAGCTGTGCCGCGGTATCAAGGGTTTCACCAGGGCATCCGTCCAATCA
AGTGGTCCGCCGCCAATGCCGGGTATGCGGGTGATGGAGCAGGCCGAGCG
AAATGAGATCCTCGAGGGACTGCGACTGAGCCTGACCGAGATGACCAAGC
AGTATCAGTCGATGTCGCTCCTTATCGACAGCATCGCCAAGCGGCAGCGC
AAAAGCAAGCTGGAGTCCGATCTTCGCCAGGTGGAGCAGGACATTCTGCT
AATCGAGACCACTCCCATTATCTATGTTTCCGAGTACTAAAAGCTTTCTA
GACCAT
BS13607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 924 | CG16984-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-RA | 1162 | CG16984-RA | 90..1013 | 17..940 | 4620 | 100 | Plus |
CG12182-RC | 3493 | CG12182-RC | 2486..3303 | 940..123 | 4090 | 100 | Minus |
CG12182-RC | 3493 | CG12182-RC | 3360..3465 | 122..17 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2596032..2596849 | 123..940 | 4090 | 100 | Plus |
3L | 28110227 | 3L | 2595870..2595975 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:03:12 has no hits.
BS13607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:35 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:05 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 58..981 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:47:12 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..1011 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:36 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 58..981 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:59 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16984-RA | 90..1011 | 17..938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:59 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
3L | 2596032..2596847 | 123..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:47:12 Download gff for
BS13607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2595870..2595975 | 17..122 | 100 | -> | Plus |
arm_3L | 2596032..2596847 | 123..938 | 100 | | Plus |
BS13607.pep Sequence
Translation from 16 to 939
> BS13607.pep
MSLVYITHHDENILECEQDFVKAQGPKESIFVYKNPVVERAAKYAKRLRE
RFNEEDKKLSIILQNDGTRVLTEAKKSAHRTMGCAHTPIDPPCAYLRKSQ
GIKWRRENTHKCPKMPPMPPLPPPGSGGKKPAMVPNFIKRNKICAGQTVP
CPPPPRYVDTPVGARHDLLNSGLVPQFICRKDFGKVPVYLKKTKRMLADM
NAVCAKEQARLLELCRGIKGFTRASVQSSGPPPMPGMRVMEQAERNEILE
GLRLSLTEMTKQYQSMSLLIDSIAKRQRKSKLESDLRQVEQDILLIETTP
IIYVSEY*
BS13607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16984-PA | 307 | CG16984-PA | 1..307 | 1..307 | 1617 | 100 | Plus |