Clone BS13607 Report

Search the DGRC for BS13607

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG16984-RA
Protein status:BS13607.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13607.3prime Sequence

651 bp (627 high quality bases) assembled on 2006-10-13

> BS13607.3prime
ATGGTCTAGAAAGCTTTTAGTACTCGGAAACATAGATAATGGGAGTGGTC
TCGATTAGCAGAATGTCCTGCTCCACCTGGCGAAGATCGGACTCCAGCTT
GCTTTTGCGCTGCCGCTTGGCGATGCTGTCGATAAGGAGCGACATCGACT
GATACTGCTTGGTCATCTCGGTCAGGCTCAGTCGCAGTCCCTCGAGGATC
TCATTTCGCTCGGCCTGCTCCATCACCCGCATACCCGGCATTGGCGGCGG
ACCACTTGATTGGACGGATGCCCTGGTGAAACCCTTGATACCGCGGCACA
GCTCCAGCAAACGTGCCTGTTCCTTGGCACACACCGCATTCATGTCGGCC
AACATCCTCTTGGTTTTCTTGAGGTAAACAGGCACCTTGCCGAAATCCTT
GCGGCAGATAAACTGCGGTACCAATCCGGAATTGAGTAGATCGTGACGAG
CTCCCACGGGAGTGTCTACATAACGAGGTGGCGGGGGACAGGGAACCGTT
TGTCCGGCACATATCTTGTTGCGTTTGATGAAGTTAGGTACCATTGCCGG
CTTTTTGCCGCCACTGCCCGGTGGTGGTAGTGGGGGCATTGGCGGCATCT
TGGGACACTTGTGGGTGTTCTCTCGCCGCCATTTGATGCCCTGGCTCTTG
C

BS13607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG16984-PA 924 CG16984-RA 290..924 651..17 3175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12182-RC 3493 CG12182-RC 2486..3120 17..651 3175 100 Plus
CG16984-RA 1162 CG16984-RA 379..1013 651..17 3175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2596215..2596849 651..17 3175 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:11 has no hits.

BS13607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:17 Download gff for BS13607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16984-PA 290..924 17..651 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:49 Download gff for BS13607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 379..1013 17..651 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:32 Download gff for BS13607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 379..1013 17..651 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:32 Download gff for BS13607.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2596215..2596849 17..651 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:49 Download gff for BS13607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2596215..2596849 17..651 100   Minus

BS13607.5prime Sequence

594 bp (493 high quality bases) assembled on 2006-10-13

> BS13607.5prime
GAAGTTATCAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGA
ATATTCTCGAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAA
TCAATTTTTGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGC
CAAGAGACTTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTA
TCCTCCAGAACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCC
CACCGCACCATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTA
TTTGCGCAAGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGT
GTCCCAAGATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGC
AAAAAGCCGGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGC
CGGACAAACGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCG
TGGGAGCTCGTCACGATCTACTNCATTCCGGATTGGTACCGCAGTTTATC
TGCCGCANGGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAAC

BS13607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16984-PA 924 CG16984-RA 1..578 17..594 2827 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16984-RA 1162 CG16984-RA 90..667 17..594 2853 99.5 Plus
CG12182-RC 3493 CG12182-RC 2832..3303 594..123 2323 99.4 Minus
CG12182-RC 3493 CG12182-RC 3360..3465 122..17 530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2596032..2596503 123..594 2323 99.4 Plus
3L 28110227 3L 2595870..2595975 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:28:46 has no hits.

BS13607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:18 Download gff for BS13607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16984-PA 1..578 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:10 Download gff for BS13607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 90..667 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:34 Download gff for BS13607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 90..667 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:34 Download gff for BS13607.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2595870..2595975 17..122 100 -> Plus
3L 2596032..2596503 123..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:10 Download gff for BS13607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2595870..2595975 17..122 100 -> Plus
arm_3L 2596032..2596503 123..594 99   Plus

BS13607.complete Sequence

956 bp assembled on 2006-11-01

GenBank Submission: FJ637487

> BS13607.complete
GAAGTTATCAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGA
ATATTCTCGAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAA
TCAATTTTTGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGC
CAAGAGACTTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTA
TCCTCCAGAACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCC
CACCGCACCATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTA
TTTGCGCAAGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGT
GTCCCAAGATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGC
AAAAAGCCGGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGC
CGGACAAACGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCG
TGGGAGCTCGTCACGATCTACTCAATTCCGGATTGGTACCGCAGTTTATC
TGCCGCAAGGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAACCAAGAG
GATGTTGGCCGACATGAATGCGGTGTGTGCCAAGGAACAGGCACGTTTGC
TGGAGCTGTGCCGCGGTATCAAGGGTTTCACCAGGGCATCCGTCCAATCA
AGTGGTCCGCCGCCAATGCCGGGTATGCGGGTGATGGAGCAGGCCGAGCG
AAATGAGATCCTCGAGGGACTGCGACTGAGCCTGACCGAGATGACCAAGC
AGTATCAGTCGATGTCGCTCCTTATCGACAGCATCGCCAAGCGGCAGCGC
AAAAGCAAGCTGGAGTCCGATCTTCGCCAGGTGGAGCAGGACATTCTGCT
AATCGAGACCACTCCCATTATCTATGTTTCCGAGTACTAAAAGCTTTCTA
GACCAT

BS13607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG16984-RA 924 CG16984-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG16984-RA 1162 CG16984-RA 90..1013 17..940 4620 100 Plus
CG12182-RC 3493 CG12182-RC 2486..3303 940..123 4090 100 Minus
CG12182-RC 3493 CG12182-RC 3360..3465 122..17 530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2596032..2596849 123..940 4090 100 Plus
3L 28110227 3L 2595870..2595975 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:03:12 has no hits.

BS13607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:35 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:05 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 58..981 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:47:12 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 90..1011 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:36 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 58..981 17..940 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:59 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
CG16984-RA 90..1011 17..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:59 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2595870..2595975 17..122 100 -> Plus
3L 2596032..2596847 123..938 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:47:12 Download gff for BS13607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2595870..2595975 17..122 100 -> Plus
arm_3L 2596032..2596847 123..938 100   Plus

BS13607.pep Sequence

Translation from 16 to 939

> BS13607.pep
MSLVYITHHDENILECEQDFVKAQGPKESIFVYKNPVVERAAKYAKRLRE
RFNEEDKKLSIILQNDGTRVLTEAKKSAHRTMGCAHTPIDPPCAYLRKSQ
GIKWRRENTHKCPKMPPMPPLPPPGSGGKKPAMVPNFIKRNKICAGQTVP
CPPPPRYVDTPVGARHDLLNSGLVPQFICRKDFGKVPVYLKKTKRMLADM
NAVCAKEQARLLELCRGIKGFTRASVQSSGPPPMPGMRVMEQAERNEILE
GLRLSLTEMTKQYQSMSLLIDSIAKRQRKSKLESDLRQVEQDILLIETTP
IIYVSEY*

BS13607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG16984-PA 307 CG16984-PA 1..307 1..307 1617 100 Plus