Clone Sequence Records
BS13615.3prime Sequence
727 bp (628 high quality bases) assembled on 2006-10-13
> BS13615.3prime
ATGGTCTAGAAAGCTTTTAAGCCAAATCGGAGGCGTAGGGCACGTTCGCC
AGGTGCCCGATGGCGCCGACGGCCAGCTTGGAGCTGCCCACCTTCTTGGC
CGCCTCCTGGACCTGCGACTGCGAGATGCCATCGATTGCGCCAAGCAGGG
CGTCCGCCTCCAGCACGTTCCGGGTGAGCGCCGCCTGGCGACCGATCTCC
TTAATTAGACCACCGTCCGACGAGTAGCGCGAGATGATGCGCGCCTTCAG
AAGAGCCTTGCCTCTGGCCACATCCTTATCAGACACCGAAGCCGACTTCA
GGCCGCGCACCAGGAACTCCACGGTCTTGCCAATGTCCTTGGAGTCGGCG
GAGACCACAAAACCGAACAGACCAGCGTCCGAGTAGCTGGCATTCACAGC
CTTGACAGAGGCTCCGACGCCGCCGGCGCAGTTGACGGCCTCGCCAAAGA
GTCCAGCAGAAGTGCCGCGCTTGGTGGCGGCCTTGGCGCCGAGCGCCTGC
TCCAGGATGGCGAATGCCAGCGCTTCCTTGTGGTTCGATGCGGCGGCGCC
CTGTCCAGCAACGGCGACGACCGCACGGTGACCAGAAGTGTCCTTGCGCG
CATCTCCACCATACCAGTTGGCGGAGGCAGCCTTGCTGCCGCCGCTGGGG
AACTGCANGGTCTGGGCGAAGCCGGCCAGCGTGTTGTTGTCGATTCCCAC
GCCCACGACAGCGGCACGGCCAGCTGC
BS13615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-PA | 1323 | CG4169-RA | 613..1323 | 727..17 | 3536 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1537 | CG4169-RB | 740..1450 | 727..17 | 3544 | 99.9 | Minus |
CG4169-RA | 1686 | CG4169-RA | 889..1599 | 727..17 | 3544 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16585314..16586024 | 727..17 | 3544 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:15:43 has no hits.
BS13615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:21 Download gff for
BS13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-PA | 613..1323 | 17..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:38 Download gff for
BS13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 889..1599 | 17..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:00 Download gff for
BS13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 889..1599 | 17..727 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:00 Download gff for
BS13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16585314..16586024 | 17..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:38 Download gff for
BS13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16578414..16579124 | 17..727 | 99 | | Minus |
BS13615.5prime Sequence
731 bp (648 high quality bases) assembled on 2006-10-13
> BS13615.5prime
GAAGTTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGC
GCGCCATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGAC
CTGTCCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCAC
CGCCGATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCG
GATCACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGT
TTGGCCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCG
CAACATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGC
TCGTCGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTG
CGCTATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGT
CGACAATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGG
AACGCGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGC
AACTCGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAG
CCTGCTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCG
TGGGCGTGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTG
CAGTTCCCCAGCGGCGGCAGCAAGGCTGCCT
BS13615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-PA | 1323 | CG4169-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1537 | CG4169-RB | 127..842 | 16..731 | 3580 | 100 | Plus |
CG4169-RA | 1686 | CG4169-RA | 276..991 | 16..731 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16584778..16585083 | 195..500 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 16585183..16585416 | 498..731 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 16584589..16584722 | 62..195 | 670 | 100 | Plus |
3L | 28110227 | 3L | 16584399..16584444 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1159..1201 | 442..484 | 107 | 72.1 | Plus |
BS13615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:21 Download gff for
BS13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:55 Download gff for
BS13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..991 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:52 Download gff for
BS13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..991 | 9..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:52 Download gff for
BS13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16584394..16584444 | 9..61 | 94 | -> | Plus |
3L | 16584589..16584722 | 62..195 | 100 | -> | Plus |
3L | 16584779..16585082 | 196..499 | 100 | -> | Plus |
3L | 16585185..16585416 | 500..731 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:55 Download gff for
BS13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16577494..16577544 | 9..61 | 94 | -> | Plus |
arm_3L | 16577689..16577822 | 62..195 | 100 | -> | Plus |
arm_3L | 16577879..16578182 | 196..499 | 100 | -> | Plus |
arm_3L | 16578285..16578516 | 500..731 | 100 | | Plus |
BS13615.complete Sequence
1355 bp assembled on 2006-11-01
GenBank Submission: FJ637488
> BS13615.complete
GAAGTTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGC
GCGCCATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGAC
CTGTCCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCAC
CGCCGATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCG
GATCACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGT
TTGGCCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCG
CAACATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGC
TCGTCGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTG
CGCTATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGT
CGACAATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGG
AACGCGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGC
AACTCGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAG
CCTGCTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCG
TGGGCGTGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTG
CAGTTCCCCAGCGGCGGCAGCAAGGCTGCCTCCGCCAACTGGTATGGTGG
AGATGCGCGCAAGGACACTTCTGGTCACCGTGCGGTCGTCGCCGTTGCTG
GACAGGGCGCCGCCGCATCGAACCACAAGGAAGCGCTGGCATTCGCCATC
CTGGAGCAGGCGCTCGGCGCCAAGGCCGCCACCAAGCGCGGCACTTCTGC
TGGACTCTTTGGCGAGGCCGTCAACTGCGCCGGCGGCGTCGGAGCCTCTG
TCAAGGCTGTGAATGCCAGCTACTCGGACGCTGGTCTGTTCGGTTTTGTG
GTCTCCGCCGACTCCAAGGACATTGGCAAGACCGTGGAGTTCCTGGTGCG
CGGCCTGAAGTCGGCTTCGGTGTCTGATAAGGATGTGGCCAGAGGCAAGG
CTCTTCTGAAGGCGCGCATCATCTCGCGCTACTCGTCGGACGGTGGTCTA
ATTAAGGAGATCGGTCGCCAGGCGGCGCTCACCCGGAACGTGCTGGAGGC
GGACGCCCTGCTTGGCGCAATCGATGGCATCTCGCAGTCGCAGGTCCAGG
AGGCGGCCAAGAAGGTGGGCAGCTCCAAGCTGGCCGTCGGCGCCATCGGG
CACCTGGCGAACGTGCCCTACGCCTCCGATTTGGCTTAAAAGCTTTCTAG
ACCAT
BS13615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1323 | CG4169-PB | 1..1323 | 17..1339 | 6615 | 100 | Plus |
CG4169-RA | 1323 | CG4169-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-RB | 1537 | CG4169-RB | 127..1450 | 16..1339 | 6620 | 100 | Plus |
CG4169-RA | 1686 | CG4169-RA | 276..1599 | 16..1339 | 6620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16585183..16586024 | 498..1339 | 4210 | 100 | Plus |
3L | 28110227 | 3L | 16584778..16585083 | 195..500 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 16584589..16584722 | 62..195 | 670 | 100 | Plus |
3L | 28110227 | 3L | 16584399..16584444 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:02 has no hits.
BS13615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:37 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 1..1323 | 17..1339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:07 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..1599 | 9..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:37 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 277..1597 | 17..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:37 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 271..1599 | 9..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:34 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4169-RA | 277..1597 | 17..1337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:34 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16584400..16584444 | 17..61 | 100 | -> | Plus |
3L | 16584589..16584722 | 62..195 | 100 | -> | Plus |
3L | 16584779..16585082 | 196..499 | 100 | -> | Plus |
3L | 16585185..16586022 | 500..1337 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:37 Download gff for
BS13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16577689..16577822 | 62..195 | 100 | -> | Plus |
arm_3L | 16577500..16577544 | 17..61 | 100 | -> | Plus |
arm_3L | 16577879..16578182 | 196..499 | 100 | -> | Plus |
arm_3L | 16578285..16579122 | 500..1337 | 100 | | Plus |
BS13615.pep Sequence
Translation from 16 to 1338
> BS13615.pep
MACNASKTSLLRAIAKRGYATCPRPVGDLSAVNVKVLENKLVVATADATL
PVSRVSLVLGAGSRNESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQV
GGTLTTWGDRELVGYTVTTTADNAETGLRYLQDLLQPAFKPWELVDNAKT
VVNQLNAVSTEERAIELVHKAAFRNGLGNSIYSPRFQLGKLSSESLLHYV
AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSGGSKAASANWYGGDARKD
TSGHRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGE
AVNCAGGVGASVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGLKSA
SVSDKDVARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLG
AIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDLA*
BS13615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4169-PB | 440 | CG4169-PB | 1..440 | 1..440 | 2172 | 100 | Plus |
CG4169-PA | 440 | CG4169-PA | 1..440 | 1..440 | 2172 | 100 | Plus |
CG3731-PB | 470 | CG3731-PB | 29..456 | 20..434 | 208 | 21.6 | Plus |
CG3731-PA | 470 | CG3731-PA | 29..456 | 20..434 | 208 | 21.6 | Plus |