Clone BS13615 Report

Search the DGRC for BS13615

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG4169-RA
Protein status:BS13615.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13615.3prime Sequence

727 bp (628 high quality bases) assembled on 2006-10-13

> BS13615.3prime
ATGGTCTAGAAAGCTTTTAAGCCAAATCGGAGGCGTAGGGCACGTTCGCC
AGGTGCCCGATGGCGCCGACGGCCAGCTTGGAGCTGCCCACCTTCTTGGC
CGCCTCCTGGACCTGCGACTGCGAGATGCCATCGATTGCGCCAAGCAGGG
CGTCCGCCTCCAGCACGTTCCGGGTGAGCGCCGCCTGGCGACCGATCTCC
TTAATTAGACCACCGTCCGACGAGTAGCGCGAGATGATGCGCGCCTTCAG
AAGAGCCTTGCCTCTGGCCACATCCTTATCAGACACCGAAGCCGACTTCA
GGCCGCGCACCAGGAACTCCACGGTCTTGCCAATGTCCTTGGAGTCGGCG
GAGACCACAAAACCGAACAGACCAGCGTCCGAGTAGCTGGCATTCACAGC
CTTGACAGAGGCTCCGACGCCGCCGGCGCAGTTGACGGCCTCGCCAAAGA
GTCCAGCAGAAGTGCCGCGCTTGGTGGCGGCCTTGGCGCCGAGCGCCTGC
TCCAGGATGGCGAATGCCAGCGCTTCCTTGTGGTTCGATGCGGCGGCGCC
CTGTCCAGCAACGGCGACGACCGCACGGTGACCAGAAGTGTCCTTGCGCG
CATCTCCACCATACCAGTTGGCGGAGGCAGCCTTGCTGCCGCCGCTGGGG
AACTGCANGGTCTGGGCGAAGCCGGCCAGCGTGTTGTTGTCGATTCCCAC
GCCCACGACAGCGGCACGGCCAGCTGC

BS13615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-PA 1323 CG4169-RA 613..1323 727..17 3536 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-RB 1537 CG4169-RB 740..1450 727..17 3544 99.9 Minus
CG4169-RA 1686 CG4169-RA 889..1599 727..17 3544 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16585314..16586024 727..17 3544 99.9 Minus
Blast to na_te.dros performed on 2015-02-06 10:15:43 has no hits.

BS13615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:21 Download gff for BS13615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4169-PA 613..1323 17..727 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:38 Download gff for BS13615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 889..1599 17..727 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:00 Download gff for BS13615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 889..1599 17..727 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:00 Download gff for BS13615.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16585314..16586024 17..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:38 Download gff for BS13615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16578414..16579124 17..727 99   Minus

BS13615.5prime Sequence

731 bp (648 high quality bases) assembled on 2006-10-13

> BS13615.5prime
GAAGTTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGC
GCGCCATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGAC
CTGTCCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCAC
CGCCGATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCG
GATCACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGT
TTGGCCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCG
CAACATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGC
TCGTCGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTG
CGCTATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGT
CGACAATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGG
AACGCGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGC
AACTCGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAG
CCTGCTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCG
TGGGCGTGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTG
CAGTTCCCCAGCGGCGGCAGCAAGGCTGCCT

BS13615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-PA 1323 CG4169-RA 1..715 17..731 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-RB 1537 CG4169-RB 127..842 16..731 3580 100 Plus
CG4169-RA 1686 CG4169-RA 276..991 16..731 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16584778..16585083 195..500 1530 100 Plus
3L 28110227 3L 16585183..16585416 498..731 1170 100 Plus
3L 28110227 3L 16584589..16584722 62..195 670 100 Plus
3L 28110227 3L 16584399..16584444 16..61 230 100 Plus
Blast to na_te.dros performed 2015-02-10 15:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1159..1201 442..484 107 72.1 Plus

BS13615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:21 Download gff for BS13615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4169-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:55 Download gff for BS13615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 271..991 9..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:52 Download gff for BS13615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 271..991 9..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:52 Download gff for BS13615.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16584394..16584444 9..61 94 -> Plus
3L 16584589..16584722 62..195 100 -> Plus
3L 16584779..16585082 196..499 100 -> Plus
3L 16585185..16585416 500..731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:55 Download gff for BS13615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16577494..16577544 9..61 94 -> Plus
arm_3L 16577689..16577822 62..195 100 -> Plus
arm_3L 16577879..16578182 196..499 100 -> Plus
arm_3L 16578285..16578516 500..731 100   Plus

BS13615.complete Sequence

1355 bp assembled on 2006-11-01

GenBank Submission: FJ637488

> BS13615.complete
GAAGTTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGC
GCGCCATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGAC
CTGTCCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCAC
CGCCGATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCG
GATCACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGT
TTGGCCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCG
CAACATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGC
TCGTCGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTG
CGCTATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGT
CGACAATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGG
AACGCGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGC
AACTCGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAG
CCTGCTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCG
TGGGCGTGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTG
CAGTTCCCCAGCGGCGGCAGCAAGGCTGCCTCCGCCAACTGGTATGGTGG
AGATGCGCGCAAGGACACTTCTGGTCACCGTGCGGTCGTCGCCGTTGCTG
GACAGGGCGCCGCCGCATCGAACCACAAGGAAGCGCTGGCATTCGCCATC
CTGGAGCAGGCGCTCGGCGCCAAGGCCGCCACCAAGCGCGGCACTTCTGC
TGGACTCTTTGGCGAGGCCGTCAACTGCGCCGGCGGCGTCGGAGCCTCTG
TCAAGGCTGTGAATGCCAGCTACTCGGACGCTGGTCTGTTCGGTTTTGTG
GTCTCCGCCGACTCCAAGGACATTGGCAAGACCGTGGAGTTCCTGGTGCG
CGGCCTGAAGTCGGCTTCGGTGTCTGATAAGGATGTGGCCAGAGGCAAGG
CTCTTCTGAAGGCGCGCATCATCTCGCGCTACTCGTCGGACGGTGGTCTA
ATTAAGGAGATCGGTCGCCAGGCGGCGCTCACCCGGAACGTGCTGGAGGC
GGACGCCCTGCTTGGCGCAATCGATGGCATCTCGCAGTCGCAGGTCCAGG
AGGCGGCCAAGAAGGTGGGCAGCTCCAAGCTGGCCGTCGGCGCCATCGGG
CACCTGGCGAACGTGCCCTACGCCTCCGATTTGGCTTAAAAGCTTTCTAG
ACCAT

BS13615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-RB 1323 CG4169-PB 1..1323 17..1339 6615 100 Plus
CG4169-RA 1323 CG4169-PA 1..1323 17..1339 6615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-RB 1537 CG4169-RB 127..1450 16..1339 6620 100 Plus
CG4169-RA 1686 CG4169-RA 276..1599 16..1339 6620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16585183..16586024 498..1339 4210 100 Plus
3L 28110227 3L 16584778..16585083 195..500 1530 100 Plus
3L 28110227 3L 16584589..16584722 62..195 670 100 Plus
3L 28110227 3L 16584399..16584444 16..61 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:56:02 has no hits.

BS13615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:37 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 1..1323 17..1339 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:07 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 271..1599 9..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:37 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 277..1597 17..1337 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:37 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 271..1599 9..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:34 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 277..1597 17..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:34 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16584400..16584444 17..61 100 -> Plus
3L 16584589..16584722 62..195 100 -> Plus
3L 16584779..16585082 196..499 100 -> Plus
3L 16585185..16586022 500..1337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:37 Download gff for BS13615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16577689..16577822 62..195 100 -> Plus
arm_3L 16577500..16577544 17..61 100 -> Plus
arm_3L 16577879..16578182 196..499 100 -> Plus
arm_3L 16578285..16579122 500..1337 100   Plus

BS13615.pep Sequence

Translation from 16 to 1338

> BS13615.pep
MACNASKTSLLRAIAKRGYATCPRPVGDLSAVNVKVLENKLVVATADATL
PVSRVSLVLGAGSRNESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQV
GGTLTTWGDRELVGYTVTTTADNAETGLRYLQDLLQPAFKPWELVDNAKT
VVNQLNAVSTEERAIELVHKAAFRNGLGNSIYSPRFQLGKLSSESLLHYV
AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSGGSKAASANWYGGDARKD
TSGHRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGE
AVNCAGGVGASVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGLKSA
SVSDKDVARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLG
AIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDLA*

BS13615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-PB 440 CG4169-PB 1..440 1..440 2172 100 Plus
CG4169-PA 440 CG4169-PA 1..440 1..440 2172 100 Plus
CG3731-PB 470 CG3731-PB 29..456 20..434 208 21.6 Plus
CG3731-PA 470 CG3731-PA 29..456 20..434 208 21.6 Plus