Clone Sequence Records
BS13616.3prime Sequence
721 bp (643 high quality bases) assembled on 2006-10-13
> BS13616.3prime
ATGGTCTAGAAAGCTTTCAATCGACTAGTTCGCTCCATCTCAACACATTA
AAGTTCAGATTTCCCAAATATACAAATTTGGGTCCTTTAAAGCACCTGGT
CTCAACTCGAATGGCAAAGTCCGTTCCTGGTGGCAAGTCGAACGAATTGT
GAGGATCTTCGTCTCCGCTAATTAGGTCCTTCAGGTAATCAATTAGAAAC
TGCGGACCCTCCACTATAAACTTTATAAACATTCGAGGAGTGCGCTTGGC
TTTTGAATTTGGCTGAATACTGTAGGTGTACAAAGTGCCTTCCAAGCCCC
TCTGTCCACCATAGTTCTGATTGCTCTTCTCGTGGAAGAGCAGCTCGGCC
AGAATGGAAATGAAGTAGATGCGTCGTTGGGACTCCACAGTATTGAAGCT
GGCCTTTGCCTCTCCAATGACACCGATGAATGTGTTGCTCAATTCGACCT
CCACGTTCCAGTGCCAAATGGTCTTACCGAATCCCAGGATTCTAAAATTT
CGAAATTGTCGCAATAGGCCGAAAATTGCCATTGTGTAATGGAGGCGCTT
AAGCTTCAGTCTCTCAGCACTGAATACGTTGAACGTTCGCTCATTGAGGA
ACAGGAAATGGGCAAGGAACTTGCCCAGATGGTCAGCTTCGTTATAAAAA
ACAGCCTCCTTAGAGTGGAAGTGCAGCAGACTGATGGCTACGTCGGATTC
ACTGTCTTCGTCGGAAAAGTA
BS13616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-PA | 963 | CG7707-RA | 259..963 | 721..17 | 3500 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 1138 | CG7707-RA | 352..1057 | 721..16 | 3515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17244372..17244665 | 309..16 | 1455 | 99.7 | Minus |
3L | 28110227 | 3L | 17243835..17244047 | 721..509 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 17244110..17244309 | 508..309 | 1000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:35:38 has no hits.
BS13616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:22 Download gff for
BS13616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-PA | 260..963 | 17..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:21 Download gff for
BS13616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 353..1057 | 16..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:47 Download gff for
BS13616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 353..1057 | 16..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:47 Download gff for
BS13616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17243836..17244047 | 509..720 | 100 | -> | Minus |
3L | 17244110..17244309 | 309..508 | 100 | -> | Minus |
3L | 17244373..17244665 | 16..308 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:21 Download gff for
BS13616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17237210..17237409 | 309..508 | 100 | -> | Minus |
arm_3L | 17236936..17237147 | 509..720 | 100 | -> | Minus |
arm_3L | 17237473..17237765 | 16..308 | 99 | | Minus |
BS13616.5prime Sequence
813 bp (699 high quality bases) assembled on 2006-10-13
> BS13616.5prime
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTTGAAGGGTCCGCAGTTT
CTAATTGATTACC
BS13616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-PA | 963 | CG7707-RA | 1..773 | 17..789 | 3840 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 1138 | CG7707-RA | 87..889 | 9..813 | 3960 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17243529..17243767 | 17..255 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 17243810..17244047 | 250..487 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 17244110..17244309 | 488..687 | 1000 | 100 | Plus |
3L | 28110227 | 3L | 17244372..17244497 | 687..813 | 570 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:19 has no hits.
BS13616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:22 Download gff for
BS13616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-PA | 1..796 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:29 Download gff for
BS13616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..889 | 4..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:55 Download gff for
BS13616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..889 | 4..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:55 Download gff for
BS13616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17243517..17243765 | 4..253 | 98 | -> | Plus |
3L | 17243814..17244047 | 254..487 | 100 | -> | Plus |
3L | 17244110..17244309 | 488..687 | 100 | -> | Plus |
3L | 17244373..17244497 | 688..813 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:29 Download gff for
BS13616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17236617..17236865 | 4..253 | 98 | -> | Plus |
arm_3L | 17236914..17237147 | 254..487 | 100 | -> | Plus |
arm_3L | 17237210..17237409 | 488..687 | 100 | -> | Plus |
arm_3L | 17237473..17237597 | 688..813 | 98 | | Plus |
BS13616.complete Sequence
995 bp assembled on 2006-11-01
GenBank Submission: FJ637489
> BS13616.complete
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTC
TAATTGATTACCTGAAGGACCTAATTAGCGGAGACGAAGATCCTCACAAT
TCGTTCGACTTGCCACCAGGAACGGACTTTGCCATTCGAGTTGAGACCAG
GTGCTTTAAAGGACCCAAATTTGTATATTTGGGAAATCTGAACTTTAATG
TGTTGAGATGGAGCGAACTAGTCGATTGAAAGCTTTCTAGACCAT
BS13616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 963 | CG7707-PA | 1..963 | 17..979 | 4800 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-RA | 1138 | CG7707-RA | 94..1057 | 17..980 | 4805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17244372..17244665 | 687..980 | 1455 | 99.7 | Plus |
3L | 28110227 | 3L | 17243529..17243767 | 17..255 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 17243810..17244047 | 250..487 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 17244110..17244309 | 488..687 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:45:25 has no hits.
BS13616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:41 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 1..963 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:10 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..1057 | 4..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:55 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 94..1055 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:41 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 82..1057 | 4..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:44 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7707-RA | 94..1055 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:44 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17243814..17244047 | 254..487 | 100 | -> | Plus |
3L | 17244110..17244309 | 488..687 | 100 | -> | Plus |
3L | 17244373..17244663 | 688..978 | 99 | | Plus |
3L | 17243529..17243765 | 17..253 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:55 Download gff for
BS13616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17236629..17236865 | 17..253 | 100 | -> | Plus |
arm_3L | 17236914..17237147 | 254..487 | 100 | -> | Plus |
arm_3L | 17237210..17237409 | 488..687 | 100 | -> | Plus |
arm_3L | 17237473..17237763 | 688..978 | 99 | | Plus |
BS13616.pep Sequence
Translation from 16 to 978
> BS13616.pep
MEEAQVDKRIRLQDLPAEVLHMVMGHLDLYHHKLLRETSEELKQISTAYI
LHHHKAYEVAHSEGTSEKEQSSAKRIMLQVLRTTISYFSDEDSESDVAIS
LLHFHSKEAVFYNEADHLGKFLAHFLFLNERTFNVFSAERLKLKRLHYTM
AIFGLLRQFRNFRILGFGKTIWHWNVEVELSNTFIGVIGEAKASFNTVES
QRRIYFISILAELLFHEKSNQNYGGQRGLEGTLYTYSIQPNSKAKRTPRM
FIKFIVEGPQFLIDYLKDLISGDEDPHNSFDLPPGTDFAIRVETRCFKGP
KFVYLGNLNFNVLRWSELVD*
BS13616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7707-PA | 320 | CG7707-PA | 1..320 | 1..320 | 1665 | 100 | Plus |