Clone BS13616 Report

Search the DGRC for BS13616

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:136
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG7707-RA
Protein status:BS13616.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13616.3prime Sequence

721 bp (643 high quality bases) assembled on 2006-10-13

> BS13616.3prime
ATGGTCTAGAAAGCTTTCAATCGACTAGTTCGCTCCATCTCAACACATTA
AAGTTCAGATTTCCCAAATATACAAATTTGGGTCCTTTAAAGCACCTGGT
CTCAACTCGAATGGCAAAGTCCGTTCCTGGTGGCAAGTCGAACGAATTGT
GAGGATCTTCGTCTCCGCTAATTAGGTCCTTCAGGTAATCAATTAGAAAC
TGCGGACCCTCCACTATAAACTTTATAAACATTCGAGGAGTGCGCTTGGC
TTTTGAATTTGGCTGAATACTGTAGGTGTACAAAGTGCCTTCCAAGCCCC
TCTGTCCACCATAGTTCTGATTGCTCTTCTCGTGGAAGAGCAGCTCGGCC
AGAATGGAAATGAAGTAGATGCGTCGTTGGGACTCCACAGTATTGAAGCT
GGCCTTTGCCTCTCCAATGACACCGATGAATGTGTTGCTCAATTCGACCT
CCACGTTCCAGTGCCAAATGGTCTTACCGAATCCCAGGATTCTAAAATTT
CGAAATTGTCGCAATAGGCCGAAAATTGCCATTGTGTAATGGAGGCGCTT
AAGCTTCAGTCTCTCAGCACTGAATACGTTGAACGTTCGCTCATTGAGGA
ACAGGAAATGGGCAAGGAACTTGCCCAGATGGTCAGCTTCGTTATAAAAA
ACAGCCTCCTTAGAGTGGAAGTGCAGCAGACTGATGGCTACGTCGGATTC
ACTGTCTTCGTCGGAAAAGTA

BS13616.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 963 CG7707-RA 259..963 721..17 3500 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1138 CG7707-RA 352..1057 721..16 3515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17244372..17244665 309..16 1455 99.7 Minus
3L 28110227 3L 17243835..17244047 721..509 1065 100 Minus
3L 28110227 3L 17244110..17244309 508..309 1000 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:35:38 has no hits.

BS13616.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:22 Download gff for BS13616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-PA 260..963 17..720 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:21 Download gff for BS13616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 353..1057 16..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:47 Download gff for BS13616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 353..1057 16..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:47 Download gff for BS13616.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17243836..17244047 509..720 100 -> Minus
3L 17244110..17244309 309..508 100 -> Minus
3L 17244373..17244665 16..308 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:21 Download gff for BS13616.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17237210..17237409 309..508 100 -> Minus
arm_3L 17236936..17237147 509..720 100 -> Minus
arm_3L 17237473..17237765 16..308 99   Minus

BS13616.5prime Sequence

813 bp (699 high quality bases) assembled on 2006-10-13

> BS13616.5prime
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTTGAAGGGTCCGCAGTTT
CTAATTGATTACC

BS13616.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 963 CG7707-RA 1..773 17..789 3840 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1138 CG7707-RA 87..889 9..813 3960 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17243529..17243767 17..255 1195 100 Plus
3L 28110227 3L 17243810..17244047 250..487 1190 100 Plus
3L 28110227 3L 17244110..17244309 488..687 1000 100 Plus
3L 28110227 3L 17244372..17244497 687..813 570 98.4 Plus
Blast to na_te.dros performed on 2015-02-10 21:21:19 has no hits.

BS13616.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:42:22 Download gff for BS13616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-PA 1..796 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:29 Download gff for BS13616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..889 4..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:55 Download gff for BS13616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..889 4..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:55 Download gff for BS13616.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17243517..17243765 4..253 98 -> Plus
3L 17243814..17244047 254..487 100 -> Plus
3L 17244110..17244309 488..687 100 -> Plus
3L 17244373..17244497 688..813 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:29 Download gff for BS13616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17236617..17236865 4..253 98 -> Plus
arm_3L 17236914..17237147 254..487 100 -> Plus
arm_3L 17237210..17237409 488..687 100 -> Plus
arm_3L 17237473..17237597 688..813 98   Plus

BS13616.complete Sequence

995 bp assembled on 2006-11-01

GenBank Submission: FJ637489

> BS13616.complete
GAAGTTATCAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGAT
TGCAGGACTTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGAC
CTATATCACCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAAT
CAGCACGGCGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATT
CGGAAGGAACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTG
CAGGTCCTGCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATC
CGACGTAGCCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTT
ATAACGAAGCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTC
AATGAGCGAACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCG
CCTCCATTACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATT
TTAGAATCCTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTC
GAATTGAGCAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTT
CAATACTGTGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCG
AGCTGCTCTTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGC
TTGGAAGGCACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAA
GCGCACTCCTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTC
TAATTGATTACCTGAAGGACCTAATTAGCGGAGACGAAGATCCTCACAAT
TCGTTCGACTTGCCACCAGGAACGGACTTTGCCATTCGAGTTGAGACCAG
GTGCTTTAAAGGACCCAAATTTGTATATTTGGGAAATCTGAACTTTAATG
TGTTGAGATGGAGCGAACTAGTCGATTGAAAGCTTTCTAGACCAT

BS13616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 963 CG7707-PA 1..963 17..979 4800 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1138 CG7707-RA 94..1057 17..980 4805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17244372..17244665 687..980 1455 99.7 Plus
3L 28110227 3L 17243529..17243767 17..255 1195 100 Plus
3L 28110227 3L 17243810..17244047 250..487 1190 100 Plus
3L 28110227 3L 17244110..17244309 488..687 1000 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:45:25 has no hits.

BS13616.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:39:41 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 17..979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:13:10 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..1057 4..980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:55 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 94..1055 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:39:41 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 82..1057 4..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:44 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 94..1055 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:44 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17243814..17244047 254..487 100 -> Plus
3L 17244110..17244309 488..687 100 -> Plus
3L 17244373..17244663 688..978 99   Plus
3L 17243529..17243765 17..253 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:55 Download gff for BS13616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17236629..17236865 17..253 100 -> Plus
arm_3L 17236914..17237147 254..487 100 -> Plus
arm_3L 17237210..17237409 488..687 100 -> Plus
arm_3L 17237473..17237763 688..978 99   Plus

BS13616.pep Sequence

Translation from 16 to 978

> BS13616.pep
MEEAQVDKRIRLQDLPAEVLHMVMGHLDLYHHKLLRETSEELKQISTAYI
LHHHKAYEVAHSEGTSEKEQSSAKRIMLQVLRTTISYFSDEDSESDVAIS
LLHFHSKEAVFYNEADHLGKFLAHFLFLNERTFNVFSAERLKLKRLHYTM
AIFGLLRQFRNFRILGFGKTIWHWNVEVELSNTFIGVIGEAKASFNTVES
QRRIYFISILAELLFHEKSNQNYGGQRGLEGTLYTYSIQPNSKAKRTPRM
FIKFIVEGPQFLIDYLKDLISGDEDPHNSFDLPPGTDFAIRVETRCFKGP
KFVYLGNLNFNVLRWSELVD*

BS13616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 320 CG7707-PA 1..320 1..320 1665 100 Plus